RchiOBHm_Chr3g0462181

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
9941381 .. 9941982
602 bp
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UTR
Exon/CDS
Intron
PRQ42857

Sequence Viewer

Length: 324 bp
ATGGCGGACGCTTCTGGAACACTCGACATCCAGTGGCTGATCTCCAACAGCGACGACCTTGTGCGGGTCTTGAAGGACCCCAGAGACCTCAACCACTTGACCCACTGCCTCCAAAACTCCCAAGCCCTCCGCTCCTCCTCCGATTCCGATTTCGCCGAAGCTCACAACTTGCTCCGAGATTATGAGAAGAAGTTAGATGCTTGCAAGAAGAAAACCGAGGAGGCGAAAACCGAGGCGGTTGCTGATGAGGAATTGGAGCTTCTTCAGAGAGAATTGGATGAGGGCGTTCGACAGGAGCATTTGCTTATGGAGGAGCTGAGATAA

Protein Analysis

107

Amino Acids

12.29

Weight (kDa)

4.68

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 4 cut(s) 5, 64, 130, 236
AcuI CTGAAG 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 3 cut(s) 161, 259, 316
AluI AGCT 3 cut(s) 161, 259, 316
Alw26I GTCTC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 76
AvaII GGWCC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcoDI GTCTC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 216, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 216, 231
BseGI GGATG 2 cut(s) 27, 283
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 3 cut(s) 124, 127, 233
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 78
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 4 cut(s) 5, 64, 130, 236
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 132
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 216, 231
BssMI GATC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 27, 283
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 39
BtsCI GGATG 2 cut(s) 27, 283
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 38, 103
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 17
CviJI RGCY 5 cut(s) 37, 125, 161, 259, 316
CviKI_1 RGCY 5 cut(s) 37, 125, 161, 259, 316
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 76
FaiI YATR 2 cut(s) 183, 308
FauI CCCGC 1 cut(s) 57
FokI GGATG 2 cut(s) 14, 290
HgaI GACGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 143
Hpy188I TCNGA 4 cut(s) 142, 148, 176, 267
Hpy188III TCNNGA 2 cut(s) 15, 70
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 317
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 5 cut(s) 137, 177, 256, 295, 313
LpnPI CCDG 3 cut(s) 44, 94, 278
LweI GCATC 1 cut(s) 187
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 132
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 199, 220, 254
MluCI AATT 2 cut(s) 251, 272
MmeI TCCRAC 1 cut(s) 69
NdeII GATC 1 cut(s) 39
NlaIV GGNNCC 1 cut(s) 78
PfeI GAWTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 37
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 76
SetI ASST 5 cut(s) 60, 90, 163, 261, 318
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 76
Sse9I AATT 2 cut(s) 251, 272
SsiI CCGC 4 cut(s) 5, 64, 130, 236
TaqI TCGA 2 cut(s) 24, 289
TasI AATT 2 cut(s) 251, 272
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 2 cut(s) 38, 110
TspRI CASTG 2 cut(s) 38, 110
VpaK11BI GGWCC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.