AT3G09210

Transcription termination factor nusG

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011163
Physical Location & Seq
Reverse (-)
2825142 .. 2826922
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09210.1

Sequence Viewer

Length: 1002 bp
ATGATGAAGCTGCAAGGGGGACTTCTCCAGTGGAGTCGTAGCAGCTTAATCCCGTCGATTTATACGCCAATCAACAAAACCCAATTCTCTATCGCCGCCTGTGTCATCGAGCGGAACCACCAGCTTACGGCGAAGGAGAGACGGCAGCTCCGGAACGAGCGGCGGGAGAGTAAATTGGGGTATAGCTGGCGAGAAGAAGTTGAAGAAAAGTTGATTAAGAAACCAAAAAAACGGTATGCAACGTGGACGGAGGAGCTGAATTTGGATACTTTGGCTGAGTCGGGTCCGCAATGGTGGGCGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCTCAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCAGTGTTCCCTGGTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATAAGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACCAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGCTATTTTCAAACAAGCAAAAGAAGCGCAAGAGAAAGCAGATAGTGAGTTCGAAGAGGCAGATAGAGCTGAAGAAGAAGCGAGTATACTAGCGTCACAGGAACTTCTCGCATTATCTAATTCAGATGTTATTGAGACTGTAGCAGAATCTAAACCGAAACGAGCCCCGAGAAAAGCTACACTTGCTACTGAAACAAAGGCGAAGAAGAAGAAACTTGCAGCGGGTTCTACAGTTAGAGTTTTATCAGGGACATTTGCTGAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTTCCTGAGATTCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOW NusG

Protein Analysis

333

Amino Acids

37.49

Weight (kDa)

9.58

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NusG PF02357 98 - 207 1e-08 Transcription termination factor nusG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09210
fragaria_vesca FvH4_6g12350 FvH4_6g12350
malus_domestica MD04G1143600.v1.1 MD12G1157800.v1.1
prunus_persica Prupe.6G268100_v2.0.a1 Prupe.6G268100_v2.0.a1
pyrus_communis pycom04g13030 pycom12g14990
rosa_chinensis RchiOBHm_Chr3g0464151
rosa_laevigata RLG00000024718
rosa_multiflora Rmu_sc0010401.1_g000005
rosa_roxburghii Rroxscaffold_6G00415960
rosa_rugosa Rorug03G0070800 Rorug03G0070800
rosa_samantha Rh3BG132200 Rh3CG134400 Rh3DG133400
rosa_wichuraiana Rw3G010820 Rw3G025130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
AccBSI CCGCTC 2 cut(s) 112, 160
AccI GTMKAC 1 cut(s) 700
AccIII TCCGGA 1 cut(s) 150
AciI CCGC 8 cut(s) 96, 112, 160, 163, 287, 299, 836, 904
AcsI RAATTY 3 cut(s) 259, 380, 875
AcuI CTGAAG 1 cut(s) 705
AfiI CCNNNNNNNGG 2 cut(s) 127, 376
AgsI TTSAA 6 cut(s) 203, 407, 493, 552, 625, 995
AhlI ACTAGT 1 cut(s) 955
AjnI CCWGG 1 cut(s) 463
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 7 cut(s) 133, 307, 323, 513, 565, 743, 944
Ama87I CYCGRG 2 cut(s) 348, 781
Aor13HI TCCGGA 1 cut(s) 150
ApeKI GCWGC 4 cut(s) 10, 42, 145, 833
ApoI RAATTY 3 cut(s) 259, 380, 875
AseI ATTAAT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 981
AspLEI GCGC 1 cut(s) 643
AspS9I GGNCC 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 666
AvaI CYCGRG 2 cut(s) 348, 781
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 2 cut(s) 355, 781
BarI GAAGNNNNNNTAC 2 cut(s) 684, 716
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 3 cut(s) 54, 157, 845
BccI CCATC 2 cut(s) 406, 521
BceAI ACGGC 2 cut(s) 144, 158
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 7 cut(s) 133, 307, 323, 513, 565, 743, 944
BcuI ACTAGT 1 cut(s) 955
BfaI CTAG 2 cut(s) 704, 956
BfmI CTRYAG 2 cut(s) 753, 843
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 6 cut(s) 11, 43, 96, 146, 161, 834
BlsI GCNGC 6 cut(s) 12, 44, 97, 147, 162, 835
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 348, 781
BmgT120I GGNCC 1 cut(s) 284
BmiI GGNNCC 3 cut(s) 116, 285, 887
BmrFI CCNGG 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 666
BsaJI CCNNGG 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 376
Bse1I ACTGG 3 cut(s) 28, 455, 593
Bse3DI GCAATG 1 cut(s) 296
BseAI TCCGGA 1 cut(s) 150
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 463
BseLI CCNNNNNNNGG 2 cut(s) 127, 376
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 267, 978
BseNI ACTGG 3 cut(s) 28, 455, 593
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 3 cut(s) 54, 157, 845
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 2 cut(s) 348, 781
BsiSI CCGG 1 cut(s) 151
BslFI GGGAC 2 cut(s) 33, 877
BslI CCNNNNNNNGG 2 cut(s) 127, 376
BsmAI GTCTC 7 cut(s) 133, 307, 323, 513, 565, 743, 944
BsmBI CGTCTC 2 cut(s) 133, 513
BsmFI GGGAC 2 cut(s) 33, 877
BsoBI CYCGRG 2 cut(s) 348, 781
Bsp119I TTCGAA 1 cut(s) 666
Bsp1286I GDGCHC 2 cut(s) 355, 781
Bsp13I TCCGGA 1 cut(s) 150
BspACI CCGC 8 cut(s) 96, 112, 160, 163, 287, 299, 836, 904
BspCNI CTCAG 2 cut(s) 268, 979
BspEI TCCGGA 1 cut(s) 150
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 116, 285, 887
BspT104I TTCGAA 1 cut(s) 666
BsrBI CCGCTC 2 cut(s) 112, 160
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 3 cut(s) 28, 455, 593
BssECI CCNNGG 1 cut(s) 463
BssNAI GTATAC 1 cut(s) 701
Bst1107I GTATAC 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 7 cut(s) 234, 388, 431, 605, 754, 847, 925
Bst6I CTCTTC 2 cut(s) 407, 663
BstBI TTCGAA 1 cut(s) 666
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 276, 343, 987
BstHHI GCGC 1 cut(s) 643
BstMAI GTCTC 7 cut(s) 133, 307, 323, 513, 565, 743, 944
BstMWI GCNNNNNNNGC 3 cut(s) 638, 680, 797
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 2 cut(s) 753, 843
BstV1I GCAGC 3 cut(s) 54, 157, 845
BstZ17I GTATAC 1 cut(s) 701
BsuI GTATCC 1 cut(s) 259
BtsIMutI CAGTG 3 cut(s) 35, 462, 610
Cac8I GCNNGC 1 cut(s) 188
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 643
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 696
CviAII CATG 2 cut(s) 326, 506
DdeI CTNAG 3 cut(s) 276, 343, 987
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 407, 663
EarI CTCTTC 2 cut(s) 407, 663
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 2 cut(s) 355, 781
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 2 cut(s) 348, 781
EcoICRI GAGCTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 355, 781
Esp3I CGTCTC 2 cut(s) 133, 513
FaeI CATG 2 cut(s) 329, 509
FalI AAGNNNNNCTT 3 cut(s) 38, 780, 812
FaqI GGGAC 2 cut(s) 33, 877
FatI CATG 2 cut(s) 325, 505
FauI CCCGC 2 cut(s) 156, 829
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 6 cut(s) 11, 43, 96, 146, 161, 834
FriOI GRGCYC 2 cut(s) 355, 781
Fsp4HI GCNGC 6 cut(s) 11, 43, 96, 146, 161, 834
FspBI CTAG 2 cut(s) 704, 956
GlaI GCGC 1 cut(s) 642
GluI GCNGC 6 cut(s) 11, 43, 96, 146, 161, 834
GsuI CTGGAG 1 cut(s) 11
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 696
HhaI GCGC 1 cut(s) 643
Hin1II CATG 2 cut(s) 329, 509
Hin6I GCGC 1 cut(s) 641
HinP1I GCGC 1 cut(s) 641
HinfI GANTC 6 cut(s) 34, 278, 509, 531, 761, 991
HpaII CCGG 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 246, 701
Hpy188I TCNGA 3 cut(s) 482, 536, 739
Hpy188III TCNNGA 4 cut(s) 151, 312, 326, 986
Hpy8I GTNNAC 2 cut(s) 246, 701
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 127, 940
HpyCH4III ACNGT 7 cut(s) 234, 388, 431, 605, 754, 847, 925
HpyCH4IV ACGT 2 cut(s) 242, 522
HpyCH4V TGCA 6 cut(s) 13, 239, 395, 471, 833, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 638, 680, 797
HpyF3I CTNAG 3 cut(s) 276, 343, 987
HpySE526I ACGT 2 cut(s) 242, 522
Hsp92II CATG 2 cut(s) 329, 509
HspAI GCGC 1 cut(s) 641
Kpn2I TCCGGA 1 cut(s) 150
LmnI GCTCC 2 cut(s) 153, 253
Lsp1109I GCAGC 3 cut(s) 54, 157, 845
MaeI CTAG 2 cut(s) 704, 956
MaeII ACGT 2 cut(s) 242, 522
MaeIII GTNAC 2 cut(s) 605, 708
MbiI CCGCTC 2 cut(s) 112, 160
MboII GAAGA 9 cut(s) 206, 215, 424, 680, 698, 701, 829, 832, 835
MhlI GDGCHC 2 cut(s) 355, 781
MluCI AATT 8 cut(s) 83, 173, 259, 365, 380, 733, 875, 963
MlyI GAGTC 4 cut(s) 43, 287, 503, 540
MmeI TCCRAC 2 cut(s) 514, 538
MnlI CCTC 3 cut(s) 244, 530, 664
MroI TCCGGA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 5 cut(s) 47, 216, 444, 579, 1000
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 638, 680, 797
NlaIII CATG 2 cut(s) 329, 509
NlaIV GGNNCC 3 cut(s) 116, 285, 887
NmuCI GTSAC 2 cut(s) 605, 708
NspV TTCGAA 1 cut(s) 666
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 2 cut(s) 761, 991
PkrI GCNGC 6 cut(s) 12, 44, 97, 147, 162, 835
PleI GAGTC 4 cut(s) 42, 286, 503, 539
PpsI GAGTC 4 cut(s) 42, 286, 503, 539
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 3 cut(s) 116, 285, 887
PspPI GGNCC 1 cut(s) 284
PspXI VCTCGAGB 1 cut(s) 348
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 5 cut(s) 47, 216, 444, 579, 1000
SatI GCNGC 6 cut(s) 11, 43, 96, 146, 161, 834
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 4 cut(s) 43, 287, 503, 540
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 355, 781
SfcI CTRYAG 2 cut(s) 753, 843
Sfr274I CTCGAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 666
SinI GGWCC 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SpeI ACTAGT 1 cut(s) 955
Sse9I AATT 8 cut(s) 83, 173, 259, 365, 380, 733, 875, 963
SsiI CCGC 8 cut(s) 96, 112, 160, 163, 287, 299, 836, 904
SspMI CTAG 2 cut(s) 704, 956
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 7 cut(s) 234, 388, 431, 605, 754, 847, 925
TaiI ACGT 2 cut(s) 245, 525
TaqI TCGA 5 cut(s) 56, 108, 311, 349, 666
TasI AATT 8 cut(s) 83, 173, 259, 365, 380, 733, 875, 963
TauI GCSGC 2 cut(s) 98, 163
TfiI GAWTC 2 cut(s) 761, 991
Tru1I TTAA 5 cut(s) 47, 216, 444, 579, 1000
Tru9I TTAA 5 cut(s) 47, 216, 444, 579, 1000
TscAI CASTG 3 cut(s) 35, 462, 610
TseFI GTSAC 2 cut(s) 605, 708
TseI GCWGC 4 cut(s) 10, 42, 145, 833
Tsp45I GTSAC 2 cut(s) 605, 708
TspDTI ATGAA 4 cut(s) 20, 466, 532, 990
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 3 cut(s) 35, 462, 610
VpaK11BI GGWCC 1 cut(s) 284
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 3 cut(s) 259, 380, 875
XhoI CTCGAG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 700
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 2 cut(s) 704, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.