AT3G09990

Equilibrative nucleotide transporter 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008216
Physical Location & Seq
Reverse (-)
3072662 .. 3075142
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09990.1

Sequence Viewer

Length: 1254 bp
ATGGATACTAGCATTCTAGCTGTGACGACCAATCCTAAGGGGAAAAACTATGCTCTTGCTGTTTGTTGGCTTCTTGGCGTTGGATGCCTTTTAGCATGGAACAGTATGCTCACAATTGTGGATTATTACGCTTATTTGTTCCCCTGGTATCATCCATCGAGAATCCTTACCATAATTTATCAGTCATTTTCTATTGGAGCACTTAGTGTTCTTGTTCACAAAGAGGCAAGACTCAATACCAGACGTCGAAATTTGTTTGGATATAGTCTTTTTTCCCTTGGTTCTCTTGCTGTCCTAGTGTTAAATTTAGCTACTTCGGGGAGAGGAGGGATTGGCTCTTTCATTGGAGTATGTGTCATTAGTGCGGCGTTTGGTCTAGCGGATGCACATGTTTATGGTGGAATGATCGGAGATCTTTCTATGATGACACCCGAGTTTCTTCAGTCGTTTCTAGCTGGCTTAGCTGCTTCAGGAGCATTAACCTCTGGACTGAGGCTGGTCATAAAAGCAGCATTCAAAAACTCAAGGGATGGCCTTCGCAAAGGAGCTACTTTATTCTTTGCCATGTCTGCGTCGTTCGAGTTGGTTTGCGTTCTGTTATATGCATATGTATTTCCCAGGATACCGGTCGTGAAGTACTATCGCGCAAAGGCTATCATTCAAGGATCGCGAACTGTATGGGCCGACCTTGCAGCTGGAGGCATCCAAGTGCAACCAATAACCCAGGACGAGGAAGCCTTAAGATATGATCATCGGCTAAACAAAGGAGACTTGATGTTACTGTACTCAGATCTTGCGGTTACCTTGTTCTTAGTGTATCTACTGACGTTTAGCATTTTCCCTGGATTTCTATCGGAGGATACGGGAAAATACAGTTTAGGCGACTGGTATGCACTAGTGTTGATAGCAGTGTTCAACGTGTCGGATTTGGTTGGGAGATACGTTCCCATGGTCAAGAAGTTGAAGATGAAGTCGAGGAAATGTCTCTTGATAACGTCATTGGGACGTCTCTTGTTGATTCCAGCTTTCAACATCACAGGCATATATGGAAGCCAAGGCTGGATGATTTTCTTGATGTCCGTTTTGGGATTAAGCAATGGATATTTGACTGTTTGTGTCATAACATCAGCCCCATATGATTTATTGGCACCGGAGCAAAATGCACTAGGAAACTTGTTGGTGTTATATATTTGTGGAGGGATGTTTGCAGGAGTCGCTTGTGATTGGCTTTGGTTAGTTGGTAAAGATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

417

Amino Acids

45.68

Weight (kDa)

9.12

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 118 - 411 1.4e-26 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 247, 1009
AccB1I GGYRCC 1 cut(s) 1147
AccII CGCG 2 cut(s) 645, 670
AciI CCGC 3 cut(s) 365, 380, 797
AclWI GGATC 1 cut(s) 673
AcsI RAATTY 2 cut(s) 250, 304
AcuI CTGAAG 2 cut(s) 425, 453
AcyI GRCGYC 2 cut(s) 244, 1006
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 2 cut(s) 638, 785
AfiI CCNNNNNNNGG 1 cut(s) 730
AflII CTTAAG 1 cut(s) 739
AflIII ACRYGT 2 cut(s) 388, 918
AgeI ACCGGT 1 cut(s) 625
AgsI TTSAA 5 cut(s) 517, 662, 916, 964, 1030
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 4 cut(s) 143, 617, 723, 841
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 7 cut(s) 20, 311, 455, 464, 548, 695, 1025
AluI AGCT 7 cut(s) 20, 311, 455, 464, 548, 695, 1025
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 3 cut(s) 762, 989, 1013
AlwI GGATC 1 cut(s) 673
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 2 cut(s) 532, 681
ApeKI GCWGC 3 cut(s) 464, 509, 692
ApoI RAATTY 2 cut(s) 250, 304
AsiGI ACCGGT 1 cut(s) 625
AspLEI GCGC 1 cut(s) 647
AspS9I GGNCC 1 cut(s) 681
AvaI CYCGRG 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 36
BanI GGYRCC 1 cut(s) 1147
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 451, 521, 704
BccI CCATC 2 cut(s) 163, 524
BcgI CGANNNNNNTGC 2 cut(s) 872, 906
BciT130I CCWGG 4 cut(s) 145, 619, 725, 843
BciVI GTATCC 2 cut(s) 615, 853
BclI TGATCA 1 cut(s) 748
BcoDI GTCTC 3 cut(s) 762, 989, 1013
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 7 cut(s) 9, 17, 296, 377, 452, 896, 1166
BfrI CTTAAG 1 cut(s) 739
BfuI GTATCC 2 cut(s) 615, 853
BglII AGATCT 2 cut(s) 412, 790
BisI GCNGC 4 cut(s) 366, 465, 510, 693
BlpI GCTNAGC 1 cut(s) 460
BlsI GCNGC 4 cut(s) 367, 466, 511, 694
BmcAI AGTACT 1 cut(s) 638
Bme1390I CCNGG 4 cut(s) 145, 619, 725, 843
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 681
BmiI GGNNCC 1 cut(s) 1149
BmrFI CCNGG 4 cut(s) 145, 619, 725, 843
BmsI GCATC 3 cut(s) 74, 373, 711
BpmI CTGGAG 1 cut(s) 717
Bpu1102I GCTNAGC 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 850
BsaHI GRCGYC 2 cut(s) 244, 1006
BsaJI CCNNGG 7 cut(s) 143, 277, 617, 723, 841, 948, 1054
BsaWI WCCGGW 2 cut(s) 625, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 890
Bse21I CCTNAGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 1102
Bse8I GATNNNNATC 1 cut(s) 850
BseBI CCWGG 4 cut(s) 145, 619, 725, 843
BseDI CCNNGG 7 cut(s) 143, 277, 617, 723, 841, 948, 1054
BseGI GGATG 7 cut(s) 89, 151, 388, 535, 702, 1068, 1206
BseJI GATNNNNATC 1 cut(s) 850
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 1102
BseMII CTCAG 2 cut(s) 482, 801
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 451, 521, 704
Bsh1236I CGCG 2 cut(s) 645, 670
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 2 cut(s) 534, 683
BshNI GGYRCC 1 cut(s) 1147
BshTI ACCGGT 1 cut(s) 625
BsiEI CGRYCG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 2 cut(s) 626, 1151
BslFI GGGAC 1 cut(s) 1017
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 3 cut(s) 762, 989, 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 1 cut(s) 1017
BsmI GAATGC 2 cut(s) 12, 512
BsnI GGCC 2 cut(s) 534, 683
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 5 cut(s) 405, 412, 665, 748, 790
Bsp1720I GCTNAGC 1 cut(s) 460
Bsp19I CCATGG 1 cut(s) 948
Bsp68I TCGCGA 1 cut(s) 670
BspACI CCGC 3 cut(s) 365, 380, 797
BspANI GGCC 2 cut(s) 534, 683
BspCNI CTCAG 2 cut(s) 483, 800
BspFNI CGCG 2 cut(s) 645, 670
BspLI GGNNCC 1 cut(s) 1149
BspPI GGATC 1 cut(s) 673
BspT107I GGYRCC 1 cut(s) 1147
BspTI CTTAAG 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 1102
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 1 cut(s) 890
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 7 cut(s) 143, 277, 617, 723, 841, 948, 1054
BssMI GATC 5 cut(s) 405, 412, 665, 748, 790
BssNI GRCGYC 2 cut(s) 244, 1006
BssT1I CCWWGG 3 cut(s) 277, 948, 1054
Bst2UI CCWGG 4 cut(s) 145, 619, 725, 843
Bst4CI ACNGT 5 cut(s) 104, 676, 783, 875, 1111
BstACI GRCGYC 2 cut(s) 244, 1006
BstAFI CTTAAG 1 cut(s) 739
BstC8I GCNNGC 1 cut(s) 457
BstDEI CTNAG 6 cut(s) 36, 203, 460, 491, 787, 811
BstDSI CCRYGG 1 cut(s) 948
BstEII GGTNACC 1 cut(s) 799
BstF5I GGATG 7 cut(s) 89, 151, 388, 535, 702, 1068, 1206
BstFNI CGCG 2 cut(s) 645, 670
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 5 cut(s) 408, 415, 668, 751, 793
BstMAI GTCTC 3 cut(s) 762, 989, 1013
BstMBI GATC 5 cut(s) 405, 412, 665, 748, 790
BstMCI CGRYCG 1 cut(s) 630
BstMWI GCNNNNNNNGC 6 cut(s) 84, 461, 473, 569, 689, 1214
BstNI CCWGG 4 cut(s) 145, 619, 725, 843
BstNSI RCATGY 1 cut(s) 392
BstPI GGTNACC 1 cut(s) 799
BstSCI CCNGG 4 cut(s) 143, 617, 723, 841
BstUI CGCG 2 cut(s) 645, 670
BstV1I GCAGC 3 cut(s) 451, 521, 704
BstX2I RGATCY 2 cut(s) 412, 790
BstYI RGATCY 2 cut(s) 412, 790
Bsu36I CCTNAGG 1 cut(s) 36
BsuI GTATCC 2 cut(s) 615, 853
BsuRI GGCC 2 cut(s) 534, 683
BtgI CCRYGG 1 cut(s) 948
BtsCI GGATG 7 cut(s) 89, 151, 388, 535, 702, 1068, 1206
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 1 cut(s) 915
BtuMI TCGCGA 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 457
CfoI GCGC 1 cut(s) 647
Cfr10I RCCGGY 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 681
CseI GACGC 1 cut(s) 561
Csp6I GTAC 2 cut(s) 637, 784
CspAI ACCGGT 1 cut(s) 625
CviAII CATG 4 cut(s) 96, 389, 565, 949
CviQI GTAC 2 cut(s) 637, 784
DdeI CTNAG 6 cut(s) 36, 203, 460, 491, 787, 811
DpnI GATC 5 cut(s) 407, 414, 667, 750, 792
DpnII GATC 5 cut(s) 405, 412, 665, 748, 790
DraIII CACNNNGTG 1 cut(s) 206
Eco130I CCWWGG 3 cut(s) 277, 948, 1054
Eco57I CTGAAG 2 cut(s) 425, 453
Eco81I CCTNAGG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 799
EcoRII CCWGG 4 cut(s) 143, 617, 723, 841
EcoT14I CCWWGG 3 cut(s) 277, 948, 1054
EcoT22I ATGCAT 1 cut(s) 607
ErhI CCWWGG 3 cut(s) 277, 948, 1054
Esp3I CGTCTC 1 cut(s) 1013
FaeI CATG 4 cut(s) 99, 392, 568, 952
FaqI GGGAC 1 cut(s) 1017
FatI CATG 4 cut(s) 95, 388, 564, 948
FauNDI CATATG 2 cut(s) 607, 1135
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 4 cut(s) 366, 465, 510, 693
FokI GGATG 7 cut(s) 96, 138, 395, 542, 689, 1075, 1213
Fsp4HI GCNGC 4 cut(s) 366, 465, 510, 693
FspBI CTAG 7 cut(s) 9, 17, 296, 377, 452, 896, 1166
GlaI GCGC 1 cut(s) 646
GluI GCNGC 4 cut(s) 366, 465, 510, 693
GsuI CTGGAG 1 cut(s) 717
HaeIII GGCC 2 cut(s) 534, 683
HapII CCGG 2 cut(s) 626, 1151
HgaI GACGC 1 cut(s) 561
HhaI GCGC 1 cut(s) 647
Hin1I GRCGYC 2 cut(s) 244, 1006
Hin1II CATG 4 cut(s) 99, 392, 568, 952
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HinfI GANTC 4 cut(s) 162, 231, 1018, 1212
HpaII CCGG 2 cut(s) 626, 1151
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 410, 790, 856, 925
Hpy188III TCNNGA 8 cut(s) 159, 471, 486, 631, 669, 955, 988, 1072
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 249, 577
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 5 cut(s) 104, 676, 783, 875, 1111
HpyCH4IV ACGT 6 cut(s) 244, 827, 918, 942, 995, 1006
HpyCH4V TGCA 7 cut(s) 386, 605, 692, 712, 893, 1163, 1208
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 461, 473, 569, 689, 1214
HpyF3I CTNAG 6 cut(s) 36, 203, 460, 491, 787, 811
HpySE526I ACGT 6 cut(s) 244, 827, 918, 942, 995, 1006
Hsp92I GRCGYC 2 cut(s) 244, 1006
Hsp92II CATG 4 cut(s) 99, 392, 568, 952
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 5 cut(s) 405, 412, 665, 748, 790
LmnI GCTCC 4 cut(s) 197, 473, 545, 1153
Lsp1109I GCAGC 3 cut(s) 451, 521, 704
LweI GCATC 3 cut(s) 74, 373, 711
MaeI CTAG 7 cut(s) 9, 17, 296, 377, 452, 896, 1166
MaeII ACGT 6 cut(s) 244, 827, 918, 942, 995, 1006
MaeIII GTNAC 3 cut(s) 22, 777, 799
MalI GATC 5 cut(s) 407, 414, 667, 750, 792
MboI GATC 5 cut(s) 405, 412, 665, 748, 790
MboII GAAGA 2 cut(s) 431, 976
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 2 cut(s) 412, 790
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 4 cut(s) 114, 174, 250, 304
MlyI GAGTC 2 cut(s) 225, 1221
MmeI TCCRAC 2 cut(s) 61, 903
Mph1103I ATGCAT 1 cut(s) 607
MseI TTAA 4 cut(s) 302, 479, 740, 1091
MslI CAYNNNNRTG 3 cut(s) 116, 393, 707
MspA1I CMGCKG 1 cut(s) 695
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 2 cut(s) 626, 1151
MspR9I CCNGG 4 cut(s) 145, 619, 725, 843
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 2 cut(s) 12, 512
MvaI CCWGG 4 cut(s) 145, 619, 725, 843
MvnI CGCG 2 cut(s) 645, 670
MwoI GCNNNNNNNGC 6 cut(s) 84, 461, 473, 569, 689, 1214
NcoI CCATGG 1 cut(s) 948
NdeI CATATG 2 cut(s) 607, 1135
NdeII GATC 5 cut(s) 405, 412, 665, 748, 790
NlaIII CATG 4 cut(s) 99, 392, 568, 952
NlaIV GGNNCC 1 cut(s) 1149
NmuCI GTSAC 1 cut(s) 22
NruI TCGCGA 1 cut(s) 670
NsiI ATGCAT 1 cut(s) 607
NspI RCATGY 1 cut(s) 392
OliI CACNNNNGTG 1 cut(s) 116
PciI ACATGT 1 cut(s) 388
PctI GAATGC 2 cut(s) 12, 512
PfeI GAWTC 2 cut(s) 162, 1018
PinAI ACCGGT 1 cut(s) 625
PkrI GCNGC 4 cut(s) 367, 466, 511, 694
PleI GAGTC 2 cut(s) 225, 1220
PpsI GAGTC 2 cut(s) 225, 1220
PscI ACATGT 1 cut(s) 388
Psp6I CCWGG 4 cut(s) 143, 617, 723, 841
PspEI GGTNACC 1 cut(s) 799
PspGI CCWGG 4 cut(s) 143, 617, 723, 841
PspN4I GGNNCC 1 cut(s) 1149
PspPI GGNCC 1 cut(s) 681
PsuI RGATCY 2 cut(s) 412, 790
PvuII CAGCTG 1 cut(s) 695
RruI TCGCGA 1 cut(s) 670
RsaI GTAC 2 cut(s) 638, 785
RsaNI GTAC 2 cut(s) 637, 784
RseI CAYNNNNRTG 3 cut(s) 116, 393, 707
SaqAI TTAA 4 cut(s) 302, 479, 740, 1091
SatI GCNGC 4 cut(s) 366, 465, 510, 693
Sau3AI GATC 5 cut(s) 405, 412, 665, 748, 790
Sau96I GGNCC 1 cut(s) 681
ScaI AGTACT 1 cut(s) 638
SchI GAGTC 2 cut(s) 225, 1221
ScrFI CCNGG 4 cut(s) 145, 619, 725, 843
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 3 cut(s) 74, 373, 711
SmiMI CAYNNNNRTG 3 cut(s) 116, 393, 707
SmlI CTYRAG 2 cut(s) 523, 739
SmoI CTYRAG 2 cut(s) 523, 739
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 4 cut(s) 114, 174, 250, 304
SsiI CCGC 3 cut(s) 365, 380, 797
SspMI CTAG 7 cut(s) 9, 17, 296, 377, 452, 896, 1166
StyD4I CCNGG 4 cut(s) 143, 617, 723, 841
StyI CCWWGG 3 cut(s) 277, 948, 1054
TaaI ACNGT 5 cut(s) 104, 676, 783, 875, 1111
TaiI ACGT 6 cut(s) 247, 830, 921, 945, 998, 1009
TaqI TCGA 4 cut(s) 158, 247, 579, 974
TasI AATT 4 cut(s) 114, 174, 250, 304
TatI WGTACW 2 cut(s) 636, 783
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 2 cut(s) 162, 1018
Tru1I TTAA 4 cut(s) 302, 479, 740, 1091
Tru9I TTAA 4 cut(s) 302, 479, 740, 1091
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 464, 509, 692
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 2 cut(s) 331, 983
TspGWI ACGGA 1 cut(s) 1069
TspRI CASTG 1 cut(s) 915
Vha464I CTTAAG 1 cut(s) 739
XapI RAATTY 2 cut(s) 250, 304
XceI RCATGY 1 cut(s) 392
XspI CTAG 7 cut(s) 9, 17, 296, 377, 452, 896, 1166
ZraI GACGTC 2 cut(s) 245, 1007
ZrmI AGTACT 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.