Rw2G045910

Equilibrative nucleotide transporter 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0008216
Physical Location & Seq
Forward (+)
73058144 .. 73060358
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045910.1

Sequence Viewer

Length: 1251 bp
ATGGCTGACCTTGATGATAATGGACAGCCACAGATTCAGGGGAGGTTTGCTGCAATGGTAATCTGTTGGCTTCTGGGAAATGGGTGCCTCTTTTCATGGAACAGTATGCTTACAATCGAAGATTACTATGTTGCCTTGTTCCCGAGATATCATCCGGCGAGGGTCCTCACTCTAGTGTATCAGCCGTTTGCGCTTTTTACACTCATAGCATTGTCATATAATGAAGCAAAGATCAATACTAGGAAGCGGAATTTATTTGGATATACCTTATTTTTCCTAAGTACTCTTTTGGTGCTAGTGTTGGATTTAGCTACATCCGGAAAAGGAGGTATTGGAACTTACATCGGAATCTGTGCCATTAGTGGTGCTTTTGGAGTTGCAGATGCTCACGTGCAAGGAGGAATGATTGGAGACCTGTCGTTCATGAAACCAGAATTCATCCAATCTTTCCTTGTTGGCTTGGCTGCATCAGGGGCCCTAACCTCTGGACTGAGGCTACTTACAAAGGCAATATTTGAGAATTCCCAGAATGGTCTGCGCAAGGGAGCCATTATGTTCTTTTCCATCTCTACATTCTTTGAGCTGCTATGTGTTTTTCTGTACGCTGTTGTCTTTCCGAAGCTACCAATCGTGAAGTTCTACCGCTCCAAGGCAGCATCAGAAGGATCTAAAACTGTTTCGGCTGACCTTGCTGCTGGTGGCATCCAGACATTACCGGAAGGAGATGCAGAGGATCCGACTAAGATGCAGCGGCTGGGGAACAAACAATTGTTAGCTCAAAACGTTGATTACGCAATTGATATGTTTCTAATCTATGTGCTGACCTTGTCAATTTTCCCCGGATTCCTATCAGAAGATACGGGATCTCACAGTTTGGGTACATGGTATGCACTGGTTTTGATTGCAATGTACAATGTGTGGGATCTCATAGGGAGATTCGTTCCATGCTTAGATTGCCTCAAGTTAGAATCACGTAAATGGCTGATGGTTGTAATTGTTGCTCGTTTCTTACTCGTTCCTGCGTTCTATTTCACTGCCAAGTACGGAGACCAAGGCTGGATGATCATGCTTACATCCTTCTTGGGTTTAACCAATGGTTACTTAACTGTTTGTGTGCTCACTACAGCACCTAAAGGCTACAAGGGACCGGAACAAAATGCTTTGGGAAATCTACTGGTAGTGTTCTTATTATTAGGTATATTTGCAGGAGTAACACTCGACTGGTTGTGGCTTATAGGCAAGGGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

416

Amino Acids

45.82

Weight (kDa)

8.06

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 125 - 410 3.5e-35 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 645
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 3 cut(s) 247, 643, 751
AclI AACGTT 1 cut(s) 783
AclWI GGATC 5 cut(s) 673, 728, 741, 871, 930
AcsI RAATTY 3 cut(s) 250, 434, 520
AcvI CACGTG 1 cut(s) 391
AfaI GTAC 5 cut(s) 283, 602, 880, 911, 1043
AfiI CCNNNNNNNGG 1 cut(s) 649
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 4 cut(s) 311, 583, 622, 776
AluI AGCT 4 cut(s) 311, 583, 622, 776
Alw21I GWGCWC 1 cut(s) 1119
Alw26I GTCTC 2 cut(s) 405, 1041
AlwI GGATC 5 cut(s) 673, 728, 741, 871, 930
AlwNI CAGNNNCTG 1 cut(s) 754
Ama87I CYCGRG 1 cut(s) 142
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 1 cut(s) 474
ApaI GGGCCC 1 cut(s) 478
ApeKI GCWGC 6 cut(s) 50, 464, 583, 653, 692, 748
ApoI RAATTY 3 cut(s) 250, 434, 520
AspLEI GCGC 2 cut(s) 193, 540
AspS9I GGNCC 4 cut(s) 163, 474, 475, 1145
AsuC2I CCSGG 1 cut(s) 840
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 2 cut(s) 163, 1145
BaeGI GKGCMC 1 cut(s) 478
BamHI GGATCC 1 cut(s) 733
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 478
BbrPI CACGTG 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 1119
BbvI GCAGC 6 cut(s) 37, 451, 570, 665, 679, 760
BccI CCATC 2 cut(s) 572, 979
BceAI ACGGC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 727, 761
BclI TGATCA 1 cut(s) 1062
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 2 cut(s) 405, 1041
BfaI CTAG 3 cut(s) 173, 240, 296
BfmI CTRYAG 1 cut(s) 1122
BisI GCNGC 7 cut(s) 51, 465, 584, 654, 693, 749, 752
BlsI GCNGC 7 cut(s) 52, 466, 585, 655, 694, 750, 753
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 2 cut(s) 163, 1145
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 4 cut(s) 163, 474, 475, 1145
BmiI GGNNCC 7 cut(s) 86, 164, 475, 476, 547, 735, 1146
BmrFI CCNGG 1 cut(s) 840
BmsI GCATC 6 cut(s) 373, 476, 665, 711, 715, 735
BplI GAGNNNNNCTC 2 cut(s) 1200, 1232
BpuEI CTTGAG 1 cut(s) 944
BpuMI CCSGG 1 cut(s) 840
BsaAI YACGTR 2 cut(s) 391, 974
BsaBI GATNNNNATC 1 cut(s) 847
BsaI GGTCTC 2 cut(s) 405, 1041
BsaJI CCNNGG 3 cut(s) 648, 838, 1051
BsaWI WCCGGW 3 cut(s) 317, 715, 1147
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 3 cut(s) 897, 1179, 1226
Bse3DI GCAATG 2 cut(s) 60, 912
Bse8I GATNNNNATC 1 cut(s) 847
BseAI TCCGGA 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 648, 838, 1051
BseGI GGATG 6 cut(s) 151, 314, 438, 702, 1065, 1073
BseJI GATNNNNATC 1 cut(s) 847
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 2 cut(s) 60, 912
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 3 cut(s) 897, 1179, 1226
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 6 cut(s) 37, 451, 570, 665, 679, 760
BseYI CCCAGC 1 cut(s) 754
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 1119
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 5 cut(s) 155, 318, 716, 840, 1148
BslFI GGGAC 1 cut(s) 1158
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 2 cut(s) 405, 1041
BsmFI GGGAC 1 cut(s) 1158
BsnI GGCC 1 cut(s) 476
Bso31I GGTCTC 2 cut(s) 405, 1041
BsoBI CYCGRG 1 cut(s) 142
Bsp120I GGGCCC 1 cut(s) 474
Bsp1286I GDGCHC 2 cut(s) 478, 1119
Bsp13I TCCGGA 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 909
Bsp143I GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
BspACI CCGC 3 cut(s) 247, 643, 751
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 1 cut(s) 483
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 7 cut(s) 86, 164, 475, 476, 547, 735, 1146
BspPI GGATC 5 cut(s) 673, 728, 741, 871, 930
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 405, 1041
BsrBI CCGCTC 1 cut(s) 645
BsrDI GCAATG 2 cut(s) 60, 912
BsrGI TGTACA 1 cut(s) 909
BsrI ACTGG 3 cut(s) 897, 1179, 1226
BssECI CCNNGG 3 cut(s) 648, 838, 1051
BssMI GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
BssT1I CCWWGG 2 cut(s) 648, 1051
Bst4CI ACNGT 4 cut(s) 104, 676, 872, 1108
BstAUI TGTACA 1 cut(s) 909
BstBAI YACGTR 2 cut(s) 391, 974
BstDEI CTNAG 4 cut(s) 278, 491, 741, 949
BstF5I GGATG 6 cut(s) 151, 314, 438, 702, 1065, 1073
BstHHI GCGC 2 cut(s) 193, 540
BstKTI GATC 6 cut(s) 234, 668, 736, 866, 925, 1065
BstMAI GTCTC 2 cut(s) 405, 1041
BstMBI GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
BstMWI GCNNNNNNNGC 4 cut(s) 190, 473, 689, 954
BstSCI CCNGG 1 cut(s) 838
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 6 cut(s) 37, 451, 570, 665, 679, 760
BstX2I RGATCY 4 cut(s) 665, 733, 863, 922
BstYI RGATCY 4 cut(s) 665, 733, 863, 922
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 6 cut(s) 151, 314, 438, 702, 1065, 1073
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 2 cut(s) 890, 1032
CaiI CAGNNNCTG 1 cut(s) 754
CciI TCATGA 1 cut(s) 423
CfoI GCGC 2 cut(s) 193, 540
Cfr13I GGNCC 4 cut(s) 163, 474, 475, 1145
Csp6I GTAC 5 cut(s) 282, 601, 879, 910, 1042
CviAII CATG 5 cut(s) 96, 424, 882, 945, 1066
CviQI GTAC 5 cut(s) 282, 601, 879, 910, 1042
DdeI CTNAG 4 cut(s) 278, 491, 741, 949
DpnI GATC 6 cut(s) 233, 667, 735, 865, 924, 1064
DpnII GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
Eco130I CCWWGG 2 cut(s) 648, 1051
Eco24I GRGCYC 1 cut(s) 478
Eco31I GGTCTC 2 cut(s) 405, 1041
Eco32I GATATC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 163, 1145
Eco72I CACGTG 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 142
EcoO109I RGGNCCY 3 cut(s) 163, 474, 475
EcoRI GAATTC 2 cut(s) 434, 520
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 2 cut(s) 648, 1051
EcoT38I GRGCYC 1 cut(s) 478
ErhI CCWWGG 2 cut(s) 648, 1051
FaeI CATG 5 cut(s) 99, 427, 885, 948, 1069
FaqI GGGAC 1 cut(s) 1158
FatI CATG 5 cut(s) 95, 423, 881, 944, 1065
FbaI TGATCA 1 cut(s) 1062
Fnu4HI GCNGC 7 cut(s) 51, 465, 584, 654, 693, 749, 752
FokI GGATG 6 cut(s) 138, 301, 425, 689, 1060, 1072
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 7 cut(s) 51, 465, 584, 654, 693, 749, 752
FspBI CTAG 3 cut(s) 173, 240, 296
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 2 cut(s) 192, 539
GluI GCNGC 7 cut(s) 51, 465, 584, 654, 693, 749, 752
GsaI CCCAGC 1 cut(s) 758
HaeIII GGCC 1 cut(s) 476
HapII CCGG 5 cut(s) 155, 318, 716, 840, 1148
HhaI GCGC 2 cut(s) 193, 540
Hin1II CATG 5 cut(s) 99, 427, 885, 948, 1069
Hin6I GCGC 2 cut(s) 191, 538
HinP1I GCGC 2 cut(s) 191, 538
HinfI GANTC 5 cut(s) 34, 348, 843, 936, 968
HpaII CCGG 5 cut(s) 155, 318, 716, 840, 1148
Hpy188I TCNGA 5 cut(s) 347, 618, 661, 738, 853
Hpy188III TCNNGA 6 cut(s) 142, 318, 424, 486, 631, 706
HpyAV CCTTC 3 cut(s) 656, 713, 1087
HpyCH4III ACNGT 4 cut(s) 104, 676, 872, 1108
HpyCH4IV ACGT 3 cut(s) 390, 783, 973
HpyCH4V TGCA 9 cut(s) 53, 380, 394, 467, 728, 748, 890, 905, 1205
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 473, 689, 954
HpyF3I CTNAG 4 cut(s) 278, 491, 741, 949
HpySE526I ACGT 3 cut(s) 390, 783, 973
Hsp92II CATG 5 cut(s) 99, 427, 885, 948, 1069
HspAI GCGC 2 cut(s) 191, 538
Kpn2I TCCGGA 1 cut(s) 317
Ksp22I TGATCA 1 cut(s) 1062
Kzo9I GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
LmnI GCTCC 2 cut(s) 545, 650
Lsp1109I GCAGC 6 cut(s) 37, 451, 570, 665, 679, 760
LweI GCATC 6 cut(s) 373, 476, 665, 711, 715, 735
MaeI CTAG 3 cut(s) 173, 240, 296
MaeII ACGT 3 cut(s) 390, 783, 973
MaeIII GTNAC 2 cut(s) 1097, 1210
MalI GATC 6 cut(s) 233, 667, 735, 865, 924, 1064
MbiI CCGCTC 1 cut(s) 645
MboI GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
MboII GAAGA 2 cut(s) 131, 866
MfeI CAATTG 2 cut(s) 767, 795
MflI RGATCY 4 cut(s) 665, 733, 863, 922
MhlI GDGCHC 2 cut(s) 478, 1119
MluCI AATT 7 cut(s) 250, 434, 520, 767, 795, 831, 993
MmeI TCCRAC 2 cut(s) 282, 761
MroI TCCGGA 1 cut(s) 317
MseI TTAA 2 cut(s) 1088, 1103
MslI CAYNNNNRTG 2 cut(s) 173, 976
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 5 cut(s) 155, 318, 716, 840, 1148
MspR9I CCNGG 1 cut(s) 840
MunI CAATTG 2 cut(s) 767, 795
MwoI GCNNNNNNNGC 4 cut(s) 190, 473, 689, 954
NciI CCSGG 1 cut(s) 840
NdeII GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
NlaIII CATG 5 cut(s) 99, 427, 885, 948, 1069
NlaIV GGNNCC 7 cut(s) 86, 164, 475, 476, 547, 735, 1146
NsbI TGCGCA 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 173
PagI TCATGA 1 cut(s) 423
PfeI GAWTC 5 cut(s) 34, 348, 843, 936, 968
PflFI GACNNNGTC 1 cut(s) 826
PkrI GCNGC 7 cut(s) 52, 466, 585, 655, 694, 750, 753
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
Ppu21I YACGTR 2 cut(s) 391, 974
PpuMI RGGWCCY 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 163
PspCI CACGTG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 754
PspN4I GGNNCC 7 cut(s) 86, 164, 475, 476, 547, 735, 1146
PspOMI GGGCCC 1 cut(s) 474
PspPI GGNCC 4 cut(s) 163, 474, 475, 1145
PspPPI RGGWCCY 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 4 cut(s) 665, 733, 863, 922
PsyI GACNNNGTC 1 cut(s) 826
RsaI GTAC 5 cut(s) 283, 602, 880, 911, 1043
RsaNI GTAC 5 cut(s) 282, 601, 879, 910, 1042
RseI CAYNNNNRTG 2 cut(s) 173, 976
SaqAI TTAA 2 cut(s) 1088, 1103
SatI GCNGC 7 cut(s) 51, 465, 584, 654, 693, 749, 752
Sau3AI GATC 6 cut(s) 231, 665, 733, 863, 922, 1062
Sau96I GGNCC 4 cut(s) 163, 474, 475, 1145
ScaI AGTACT 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 840
SduI GDGCHC 2 cut(s) 478, 1119
SfaNI GCATC 6 cut(s) 373, 476, 665, 711, 715, 735
SfcI CTRYAG 1 cut(s) 1122
SinI GGWCC 2 cut(s) 163, 1145
SmiMI CAYNNNNRTG 2 cut(s) 173, 976
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 7 cut(s) 250, 434, 520, 767, 795, 831, 993
SsiI CCGC 3 cut(s) 247, 643, 751
SspI AATATT 1 cut(s) 513
SspMI CTAG 3 cut(s) 173, 240, 296
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 2 cut(s) 648, 1051
TaaI ACNGT 4 cut(s) 104, 676, 872, 1108
TaiI ACGT 3 cut(s) 393, 786, 976
TaqI TCGA 2 cut(s) 117, 1218
TasI AATT 7 cut(s) 250, 434, 520, 767, 795, 831, 993
TatI WGTACW 2 cut(s) 281, 909
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 5 cut(s) 34, 348, 843, 936, 968
Tru1I TTAA 2 cut(s) 1088, 1103
Tru9I TTAA 2 cut(s) 1088, 1103
TscAI CASTG 2 cut(s) 897, 1039
TseI GCWGC 6 cut(s) 50, 464, 583, 653, 692, 748
TspDTI ATGAA 5 cut(s) 84, 237, 412, 427, 440
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 2 cut(s) 897, 1039
Tth111I GACNNNGTC 1 cut(s) 826
VpaK11BI GGWCC 2 cut(s) 163, 1145
XapI RAATTY 3 cut(s) 250, 434, 520
XspI CTAG 3 cut(s) 173, 240, 296
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.