Rh2DG577800

Equilibrative nucleotide transporter 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008216
Physical Location & Seq
Forward (+)
80851873 .. 80852865
993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG577800.1

Sequence Viewer

Length: 756 bp
ATGGACTTCTTTTCAGCTGGGTTACTAAATACTGGTTATGTTCTTTCCACTGCAGTTATGTTCTTTTCCATCTCTACATTCTTTGAGCTGCTATGTGTTTTTCTGTACGCTGTTGTCTTTCCGAAGCTACCAATTGTGAAGTTCTACCGCTCCAAGGCAGCATCAGAAGGATCTAAAACTGTTTCGGCTGACCTTGCTGCTGGTGGCATCCAGACATTACCGGAAGGAGATGCAGAGGATCCGACTAAGATGCAGCGGCTGGGGAACAAACAATTGTTAGCTCAAAACGTTGATTACGCAATTGATATGTTTCTAATCTATGTGCTGACCTTGTCAATTTTCCCCGGATTCCTATCAGAAGATACGGGATCTCACAGTTTGGGTACATGGTATGCACTGGTTTTGTTTGCAATGTACAATGTGTGGGATCTCATAGGGAGATACGTTCCATGCTTAGATTGCCTCAAGTTAGAATCACGTAAATGGCTGATGGTTGTAATTGTTGCTCGTTTCTTACTCGTTCCTGCGTTCTATTTCACTGCCAAGTACGGAGACCAAGGCTGGATGATCATGCTTACATCCTTCTTGGGTTTAACCCATGGTTACTTAACTGTTTGTGTGCTCACTACAGCACCTAAAGGCTACAAGGGACCGGAACAAAATGCTTTGGGAAATCTACTGGTAGTGTTCTTATTATTAGGTATATTTGCAGGAGTAACACTCGACTGGTTGTGGCTTATAGGCAAGGGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

251

Amino Acids

27.92

Weight (kDa)

6.1

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 16 - 245 9.4e-26 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 2 cut(s) 148, 256
AclI AACGTT 1 cut(s) 288
AclWI GGATC 5 cut(s) 178, 233, 246, 376, 435
AfaI GTAC 4 cut(s) 107, 385, 416, 548
AfiI CCNNNNNNNGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 17, 88, 127, 281
AluI AGCT 4 cut(s) 17, 88, 127, 281
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 5 cut(s) 178, 233, 246, 376, 435
AlwNI CAGNNNCTG 1 cut(s) 259
ApeKI GCWGC 4 cut(s) 88, 158, 197, 253
AspS9I GGNCC 1 cut(s) 650
AsuC2I CCSGG 1 cut(s) 345
AvaII GGWCC 1 cut(s) 650
BamHI GGATCC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 4 cut(s) 75, 170, 184, 265
BccI CCATC 2 cut(s) 77, 484
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BclI TGATCA 1 cut(s) 567
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 546
BfmI CTRYAG 2 cut(s) 51, 627
BisI GCNGC 5 cut(s) 89, 159, 198, 254, 257
BlsI GCNGC 5 cut(s) 90, 160, 199, 255, 258
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 650
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 2 cut(s) 240, 651
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 4 cut(s) 170, 216, 220, 240
BplI GAGNNNNNCTC 2 cut(s) 705, 737
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 4 cut(s) 153, 343, 556, 598
BsaWI WCCGGW 2 cut(s) 220, 652
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 4 cut(s) 37, 402, 684, 731
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 352
BseDI CCNNGG 4 cut(s) 153, 343, 556, 598
BseGI GGATG 3 cut(s) 207, 570, 578
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 417
BseNI ACTGG 4 cut(s) 37, 402, 684, 731
BseXI GCAGC 4 cut(s) 75, 170, 184, 265
BseYI CCCAGC 2 cut(s) 17, 259
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 3 cut(s) 221, 345, 653
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 663
Bso31I GGTCTC 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 624
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 5 cut(s) 170, 238, 368, 427, 567
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 148, 256
BspLI GGNNCC 2 cut(s) 240, 651
BspMAI CTGCAG 1 cut(s) 55
BspPI GGATC 5 cut(s) 178, 233, 246, 376, 435
BspTNI GGTCTC 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 417
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 4 cut(s) 37, 402, 684, 731
BssECI CCNNGG 4 cut(s) 153, 343, 556, 598
BssMI GATC 5 cut(s) 170, 238, 368, 427, 567
BssT1I CCWWGG 3 cut(s) 153, 556, 598
Bst4CI ACNGT 3 cut(s) 181, 377, 613
BstAUI TGTACA 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 479
BstDEI CTNAG 2 cut(s) 246, 454
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 3 cut(s) 207, 570, 578
BstKTI GATC 5 cut(s) 173, 241, 371, 430, 570
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 5 cut(s) 170, 238, 368, 427, 567
BstMWI GCNNNNNNNGC 2 cut(s) 194, 459
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 2 cut(s) 51, 627
BstV1I GCAGC 4 cut(s) 75, 170, 184, 265
BstX2I RGATCY 4 cut(s) 170, 238, 368, 427
BstYI RGATCY 4 cut(s) 170, 238, 368, 427
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 3 cut(s) 207, 570, 578
BtsI GCAGTG 2 cut(s) 48, 537
BtsIMutI CAGTG 3 cut(s) 48, 395, 537
CaiI CAGNNNCTG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 4 cut(s) 106, 384, 415, 547
CviAII CATG 4 cut(s) 387, 450, 571, 599
CviQI GTAC 4 cut(s) 106, 384, 415, 547
DdeI CTNAG 2 cut(s) 246, 454
DpnI GATC 5 cut(s) 172, 240, 370, 429, 569
DpnII GATC 5 cut(s) 170, 238, 368, 427, 567
Eco130I CCWWGG 3 cut(s) 153, 556, 598
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 650
EcoT14I CCWWGG 3 cut(s) 153, 556, 598
ErhI CCWWGG 3 cut(s) 153, 556, 598
FaeI CATG 4 cut(s) 390, 453, 574, 602
FaqI GGGAC 1 cut(s) 663
FatI CATG 4 cut(s) 386, 449, 570, 598
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 5 cut(s) 89, 159, 198, 254, 257
FokI GGATG 3 cut(s) 194, 565, 577
Fsp4HI GCNGC 5 cut(s) 89, 159, 198, 254, 257
GluI GCNGC 5 cut(s) 89, 159, 198, 254, 257
GsaI CCCAGC 2 cut(s) 21, 263
HapII CCGG 3 cut(s) 221, 345, 653
Hin1II CATG 4 cut(s) 390, 453, 574, 602
HinfI GANTC 2 cut(s) 348, 473
HpaII CCGG 3 cut(s) 221, 345, 653
Hpy188I TCNGA 4 cut(s) 123, 166, 243, 358
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 161, 218, 592
HpyCH4III ACNGT 3 cut(s) 181, 377, 613
HpyCH4IV ACGT 3 cut(s) 288, 444, 478
HpyCH4V TGCA 6 cut(s) 53, 233, 253, 395, 410, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 459
HpyF3I CTNAG 2 cut(s) 246, 454
HpySE526I ACGT 3 cut(s) 288, 444, 478
Hsp92II CATG 4 cut(s) 390, 453, 574, 602
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 5 cut(s) 170, 238, 368, 427, 567
LmnI GCTCC 1 cut(s) 155
Lsp1109I GCAGC 4 cut(s) 75, 170, 184, 265
LweI GCATC 4 cut(s) 170, 216, 220, 240
MaeII ACGT 3 cut(s) 288, 444, 478
MaeIII GTNAC 3 cut(s) 21, 602, 715
MalI GATC 5 cut(s) 172, 240, 370, 429, 569
MbiI CCGCTC 1 cut(s) 150
MboI GATC 5 cut(s) 170, 238, 368, 427, 567
MboII GAAGA 1 cut(s) 371
MfeI CAATTG 3 cut(s) 132, 272, 300
MflI RGATCY 4 cut(s) 170, 238, 368, 427
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 5 cut(s) 132, 272, 300, 336, 498
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 2 cut(s) 229, 473
MseI TTAA 2 cut(s) 593, 608
MslI CAYNNNNRTG 1 cut(s) 481
MspA1I CMGCKG 2 cut(s) 17, 256
MspI CCGG 3 cut(s) 221, 345, 653
MspR9I CCNGG 1 cut(s) 345
MunI CAATTG 3 cut(s) 132, 272, 300
MwoI GCNNNNNNNGC 2 cut(s) 194, 459
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 598
NdeII GATC 5 cut(s) 170, 238, 368, 427, 567
NlaIII CATG 4 cut(s) 390, 453, 574, 602
NlaIV GGNNCC 2 cut(s) 240, 651
PfeI GAWTC 2 cut(s) 348, 473
PflFI GACNNNGTC 1 cut(s) 331
PkrI GCNGC 5 cut(s) 90, 160, 199, 255, 258
Ppu21I YACGTR 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 288
PspFI CCCAGC 2 cut(s) 17, 259
PspN4I GGNNCC 2 cut(s) 240, 651
PspPI GGNCC 1 cut(s) 650
PstI CTGCAG 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 4 cut(s) 170, 238, 368, 427
PsyI GACNNNGTC 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 4 cut(s) 107, 385, 416, 548
RsaNI GTAC 4 cut(s) 106, 384, 415, 547
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 2 cut(s) 593, 608
SatI GCNGC 5 cut(s) 89, 159, 198, 254, 257
Sau3AI GATC 5 cut(s) 170, 238, 368, 427, 567
Sau96I GGNCC 1 cut(s) 650
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 4 cut(s) 170, 216, 220, 240
SfcI CTRYAG 2 cut(s) 51, 627
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 5 cut(s) 132, 272, 300, 336, 498
SsiI CCGC 2 cut(s) 148, 256
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 3 cut(s) 153, 556, 598
TaaI ACNGT 3 cut(s) 181, 377, 613
TaiI ACGT 3 cut(s) 291, 447, 481
TaqI TCGA 1 cut(s) 723
TasI AATT 5 cut(s) 132, 272, 300, 336, 498
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 2 cut(s) 348, 473
Tru1I TTAA 2 cut(s) 593, 608
Tru9I TTAA 2 cut(s) 593, 608
TscAI CASTG 3 cut(s) 55, 402, 544
TseI GCWGC 4 cut(s) 88, 158, 197, 253
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 3 cut(s) 55, 402, 544
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.