Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000196.1

Orthogroup ID

OG0008216

Physical Location & Seq

Genomic Coordinates Reverse (-)

9788 .. 12352

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000196.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggctgaccttgatgataatggacagccacagattcaggggaggtttgctgcaatggtagtctgttggcttctgggaaatgggtgcctcttttcatggaacagtatgcttacaatcgaagattactatgttgccttgttcccgagatatcatccggcgagggtcctcactctagtgtatcagccgtttgcgctttttacactcatagcattgtcatataatgaagcaaagatcaatactaggaagcggaatttatttggatataccttatttttcctaagtactcttttggtgctagtgttggatttagctacatccggaaaaggaggtattggaacttacatcggaatctgtgccattagtggtgcttttggagttgcagatgctcacgtgcaaggaggaatgattggagacctgtcgttcatgaaaccagaattcatccaatctttcctttgtggcttggctgcatcaggggccctaacctctggactgaggctccttacaaaggcaatatttgagaattcccagaatggtctgcgcaagggagccattatgttcttttccatctctacattctttgagctgctatgtgtttttctgtacgctgttgtctttccgaagctaccaattgtgaagttctaccgctccaaggcagcatcagaaggatctaaaactgtttcggctgaccttgctgctggtggcatccagacattacctgaaggagatgcagaggatccgactaagatgcagcggctggggaacaaacaattgttagctcaaaacgttgattacgcaattgatatgtttctaatctatgtgctgaccttgtcaattttccccggattcctatcagaagatacgggatctcacagtttgggtacatggtatgcactggttttgattgcaatgtacaatgtgtgggatctcatagggagatacgttccatgcttagattgcctcaagttagaatcacgtaaatggctgatggttgtaattgttgctcgtttcttactcgttcctgcgttctatttcactgccaagtatggagaccaaggttggatgatcatgcttacatccttcttgggtttaaccaatggttacttaactgtttgtgtgctgactacagcacctaaaggctacaagggaccggaacaaaatgctttgggaaatctactggtagtgttcttagtattaggtatatttgcaggtgtaacactcgactggttgtggcttataggcaagggctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

416

Amino Acids

45.81

Weight (kDa)

8.01

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09990
fragaria_vesca	FvH4_6g44380 FvH4_6g44380 FvH4_6g44380 FvH4_6g44380 FvH4_6g44380
malus_domestica	MD09G1097900.v1.1 MD17G1086200.v1.1
prunus_persica	Prupe.3G228300_v2.0.a1
pyrus_communis	pycom09g02200 pycom17g08370
rosa_chinensis	RchiOBHm_Chr2g0161321
rosa_laevigata	RLG00000021279
rosa_multiflora	Rmu_ssc0000196.1_g000001 Rmu_ssc0000196.1_g000003
rosa_roxburghii	Rroxscaffold_2G00088900
rosa_rugosa	Rorug02G0488300 Rorug02G0488400
rosa_samantha	Rh2AG554900 Rh2CG538600 Rh2DG577600 Rh2DG577800
rosa_wichuraiana	Rw2G045910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1196
Acc16I	TGCGCA	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	1196
AccB1I	GGYRCC	1 cut(s)	84
AccBSI	CCGCTC	1 cut(s)	645
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	3 cut(s)	247, 643, 751
AclI	AACGTT	1 cut(s)	783
AclWI	GGATC	5 cut(s)	673, 728, 741, 871, 930
AcsI	RAATTY	3 cut(s)	250, 434, 520
AcuI	CTGAAG	1 cut(s)	738
AcvI	CACGTG	1 cut(s)	391
AfaI	GTAC	4 cut(s)	283, 602, 880, 911
AfiI	CCNNNNNNNGG	2 cut(s)	505, 649
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	4 cut(s)	311, 583, 622, 776
AluI	AGCT	4 cut(s)	311, 583, 622, 776
Alw26I	GTCTC	2 cut(s)	405, 1041
AlwI	GGATC	5 cut(s)	673, 728, 741, 871, 930
AlwNI	CAGNNNCTG	1 cut(s)	754
Ama87I	CYCGRG	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	1 cut(s)	474
ApaI	GGGCCC	1 cut(s)	478
ApeKI	GCWGC	6 cut(s)	50, 464, 583, 653, 692, 748
ApoI	RAATTY	3 cut(s)	250, 434, 520
AspLEI	GCGC	2 cut(s)	193, 540
AspS9I	GGNCC	4 cut(s)	163, 474, 475, 1145
AsuC2I	CCSGG	1 cut(s)	840
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	163, 1145
BaeGI	GKGCMC	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	733
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	478
BbrPI	CACGTG	1 cut(s)	391
BbvI	GCAGC	6 cut(s)	37, 451, 570, 665, 679, 760
BccI	CCATC	2 cut(s)	572, 979
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	727, 761
BclI	TGATCA	1 cut(s)	1062
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	405, 1041
BfaI	CTAG	3 cut(s)	173, 240, 296
BfmI	CTRYAG	1 cut(s)	1122
BfuAI	ACCTGC	1 cut(s)	1196
BisI	GCNGC	7 cut(s)	51, 465, 584, 654, 693, 749, 752
BlsI	GCNGC	7 cut(s)	52, 466, 585, 655, 694, 750, 753
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	2 cut(s)	163, 1145
BmeT110I	CYCGRG	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	163, 474, 475, 1145
BmiI	GGNNCC	8 cut(s)	86, 164, 475, 476, 497, 547, 735, 1146
BmrFI	CCNGG	1 cut(s)	840
BmsI	GCATC	6 cut(s)	373, 476, 665, 711, 715, 735
BpuEI	CTTGAG	1 cut(s)	944
BpuMI	CCSGG	1 cut(s)	840
BsaAI	YACGTR	2 cut(s)	391, 974
BsaBI	GATNNNNATC	1 cut(s)	847
BsaI	GGTCTC	2 cut(s)	405, 1041
BsaJI	CCNNGG	3 cut(s)	648, 838, 1051
BsaWI	WCCGGW	2 cut(s)	317, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 649
Bse1I	ACTGG	3 cut(s)	897, 1179, 1226
Bse3DI	GCAATG	2 cut(s)	60, 912
Bse8I	GATNNNNATC	1 cut(s)	847
BseAI	TCCGGA	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	648, 838, 1051
BseGI	GGATG	6 cut(s)	151, 314, 438, 702, 1065, 1073
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	2 cut(s)	505, 649
BseMI	GCAATG	2 cut(s)	60, 912
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	3 cut(s)	897, 1179, 1226
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	6 cut(s)	37, 451, 570, 665, 679, 760
BseYI	CCCAGC	1 cut(s)	754
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	4 cut(s)	155, 318, 840, 1148
BslFI	GGGAC	1 cut(s)	1158
BslI	CCNNNNNNNGG	2 cut(s)	505, 649
BsmAI	GTCTC	2 cut(s)	405, 1041
BsmFI	GGGAC	1 cut(s)	1158
BsnI	GGCC	1 cut(s)	476
Bso31I	GGTCTC	2 cut(s)	405, 1041
BsoBI	CYCGRG	1 cut(s)	142
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp13I	TCCGGA	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
BspACI	CCGC	3 cut(s)	247, 643, 751
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	8 cut(s)	86, 164, 475, 476, 497, 547, 735, 1146
BspMI	ACCTGC	1 cut(s)	1196
BspPI	GGATC	5 cut(s)	673, 728, 741, 871, 930
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	2 cut(s)	405, 1041
BsrBI	CCGCTC	1 cut(s)	645
BsrDI	GCAATG	2 cut(s)	60, 912
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	897, 1179, 1226
BssECI	CCNNGG	3 cut(s)	648, 838, 1051
BssMI	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
BssT1I	CCWWGG	2 cut(s)	648, 1051
Bst4CI	ACNGT	4 cut(s)	104, 676, 872, 1108
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	2 cut(s)	391, 974
BstDEI	CTNAG	5 cut(s)	278, 491, 741, 949, 1186
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	6 cut(s)	151, 314, 438, 702, 1065, 1073
BstHHI	GCGC	2 cut(s)	193, 540
BstKTI	GATC	6 cut(s)	234, 668, 736, 866, 925, 1065
BstMAI	GTCTC	2 cut(s)	405, 1041
BstMBI	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 473, 689, 954
BstSCI	CCNGG	1 cut(s)	838
BstSFI	CTRYAG	1 cut(s)	1122
BstSLI	GKGCMC	1 cut(s)	478
BstV1I	GCAGC	6 cut(s)	37, 451, 570, 665, 679, 760
BstX2I	RGATCY	4 cut(s)	665, 733, 863, 922
BstYI	RGATCY	4 cut(s)	665, 733, 863, 922
BsuRI	GGCC	1 cut(s)	476
BtsCI	GGATG	6 cut(s)	151, 314, 438, 702, 1065, 1073
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	2 cut(s)	890, 1032
BveI	ACCTGC	1 cut(s)	1196
CaiI	CAGNNNCTG	1 cut(s)	754
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	2 cut(s)	193, 540
Cfr13I	GGNCC	4 cut(s)	163, 474, 475, 1145
Csp6I	GTAC	4 cut(s)	282, 601, 879, 910
CviAII	CATG	5 cut(s)	96, 424, 882, 945, 1066
CviQI	GTAC	4 cut(s)	282, 601, 879, 910
DdeI	CTNAG	5 cut(s)	278, 491, 741, 949, 1186
DpnI	GATC	6 cut(s)	233, 667, 735, 865, 924, 1064
DpnII	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
Eco130I	CCWWGG	2 cut(s)	648, 1051
Eco24I	GRGCYC	1 cut(s)	478
Eco31I	GGTCTC	2 cut(s)	405, 1041
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	163, 1145
Eco57I	CTGAAG	1 cut(s)	738
Eco72I	CACGTG	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	3 cut(s)	163, 474, 475
EcoRI	GAATTC	2 cut(s)	434, 520
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	648, 1051
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	648, 1051
FaeI	CATG	5 cut(s)	99, 427, 885, 948, 1069
FaqI	GGGAC	1 cut(s)	1158
FatI	CATG	5 cut(s)	95, 423, 881, 944, 1065
FbaI	TGATCA	1 cut(s)	1062
Fnu4HI	GCNGC	7 cut(s)	51, 465, 584, 654, 693, 749, 752
FokI	GGATG	6 cut(s)	138, 301, 425, 689, 1060, 1072
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	7 cut(s)	51, 465, 584, 654, 693, 749, 752
FspBI	CTAG	3 cut(s)	173, 240, 296
FspI	TGCGCA	1 cut(s)	539
GlaI	GCGC	2 cut(s)	192, 539
GluI	GCNGC	7 cut(s)	51, 465, 584, 654, 693, 749, 752
GsaI	CCCAGC	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	4 cut(s)	155, 318, 840, 1148
HhaI	GCGC	2 cut(s)	193, 540
Hin1II	CATG	5 cut(s)	99, 427, 885, 948, 1069
Hin6I	GCGC	2 cut(s)	191, 538
HinP1I	GCGC	2 cut(s)	191, 538
HinfI	GANTC	4 cut(s)	34, 348, 843, 968
HpaII	CCGG	4 cut(s)	155, 318, 840, 1148
Hpy188I	TCNGA	5 cut(s)	347, 618, 661, 738, 853
Hpy188III	TCNNGA	5 cut(s)	142, 318, 424, 486, 706
HpyAV	CCTTC	3 cut(s)	656, 713, 1087
HpyCH4III	ACNGT	4 cut(s)	104, 676, 872, 1108
HpyCH4IV	ACGT	4 cut(s)	390, 783, 939, 973
HpyCH4V	TGCA	9 cut(s)	53, 380, 394, 467, 728, 748, 890, 905, 1205
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 473, 689, 954
HpyF3I	CTNAG	5 cut(s)	278, 491, 741, 949, 1186
HpySE526I	ACGT	4 cut(s)	390, 783, 939, 973
Hsp92II	CATG	5 cut(s)	99, 427, 885, 948, 1069
HspAI	GCGC	2 cut(s)	191, 538
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	1062
Kzo9I	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
LmnI	GCTCC	3 cut(s)	501, 545, 650
Lsp1109I	GCAGC	6 cut(s)	37, 451, 570, 665, 679, 760
LweI	GCATC	6 cut(s)	373, 476, 665, 711, 715, 735
MaeI	CTAG	3 cut(s)	173, 240, 296
MaeII	ACGT	4 cut(s)	390, 783, 939, 973
MaeIII	GTNAC	2 cut(s)	1097, 1210
MalI	GATC	6 cut(s)	233, 667, 735, 865, 924, 1064
MbiI	CCGCTC	1 cut(s)	645
MboI	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
MboII	GAAGA	2 cut(s)	131, 866
MfeI	CAATTG	3 cut(s)	627, 767, 795
MflI	RGATCY	4 cut(s)	665, 733, 863, 922
MhlI	GDGCHC	1 cut(s)	478
MluCI	AATT	8 cut(s)	250, 434, 520, 627, 767, 795, 831, 993
MmeI	TCCRAC	3 cut(s)	282, 761, 1037
MroI	TCCGGA	1 cut(s)	317
MseI	TTAA	2 cut(s)	1088, 1103
MslI	CAYNNNNRTG	2 cut(s)	173, 976
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	4 cut(s)	155, 318, 840, 1148
MspR9I	CCNGG	1 cut(s)	840
MunI	CAATTG	3 cut(s)	627, 767, 795
MwoI	GCNNNNNNNGC	4 cut(s)	190, 473, 689, 954
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
NlaIII	CATG	5 cut(s)	99, 427, 885, 948, 1069
NlaIV	GGNNCC	8 cut(s)	86, 164, 475, 476, 497, 547, 735, 1146
NsbI	TGCGCA	1 cut(s)	539
OliI	CACNNNNGTG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	1196
PfeI	GAWTC	4 cut(s)	34, 348, 843, 968
PflFI	GACNNNGTC	1 cut(s)	826
PkrI	GCNGC	7 cut(s)	52, 466, 585, 655, 694, 750, 753
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
Ppu21I	YACGTR	2 cut(s)	391, 974
PpuMI	RGGWCCY	1 cut(s)	163
Psp1406I	AACGTT	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	163
PspCI	CACGTG	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	754
PspN4I	GGNNCC	8 cut(s)	86, 164, 475, 476, 497, 547, 735, 1146
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	4 cut(s)	163, 474, 475, 1145
PspPPI	RGGWCCY	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	754
PsuI	RGATCY	4 cut(s)	665, 733, 863, 922
PsyI	GACNNNGTC	1 cut(s)	826
RsaI	GTAC	4 cut(s)	283, 602, 880, 911
RsaNI	GTAC	4 cut(s)	282, 601, 879, 910
RseI	CAYNNNNRTG	2 cut(s)	173, 976
SaqAI	TTAA	2 cut(s)	1088, 1103
SatI	GCNGC	7 cut(s)	51, 465, 584, 654, 693, 749, 752
Sau3AI	GATC	6 cut(s)	231, 665, 733, 863, 922, 1062
Sau96I	GGNCC	4 cut(s)	163, 474, 475, 1145
ScaI	AGTACT	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	6 cut(s)	373, 476, 665, 711, 715, 735
SfcI	CTRYAG	1 cut(s)	1122
SinI	GGWCC	2 cut(s)	163, 1145
SmiMI	CAYNNNNRTG	2 cut(s)	173, 976
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
Sse9I	AATT	8 cut(s)	250, 434, 520, 627, 767, 795, 831, 993
SsiI	CCGC	3 cut(s)	247, 643, 751
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	3 cut(s)	173, 240, 296
StyD4I	CCNGG	1 cut(s)	838
StyI	CCWWGG	2 cut(s)	648, 1051
TaaI	ACNGT	4 cut(s)	104, 676, 872, 1108
TaiI	ACGT	4 cut(s)	393, 786, 942, 976
TaqI	TCGA	2 cut(s)	117, 1218
TasI	AATT	8 cut(s)	250, 434, 520, 627, 767, 795, 831, 993
TatI	WGTACW	2 cut(s)	281, 909
TauI	GCSGC	1 cut(s)	754
TfiI	GAWTC	4 cut(s)	34, 348, 843, 968
Tru1I	TTAA	2 cut(s)	1088, 1103
Tru9I	TTAA	2 cut(s)	1088, 1103
TscAI	CASTG	2 cut(s)	897, 1039
TseI	GCWGC	6 cut(s)	50, 464, 583, 653, 692, 748
TspDTI	ATGAA	5 cut(s)	84, 237, 412, 427, 440
TspRI	CASTG	2 cut(s)	897, 1039
Tth111I	GACNNNGTC	1 cut(s)	826
VpaK11BI	GGWCC	2 cut(s)	163, 1145
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	250, 434, 520
XspI	CTAG	3 cut(s)	173, 240, 296
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.