Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Reverse (-)

3130063 .. 3133329

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGATGATGATCAGCTCCTCCTCCATTACATCATCCCTTTCTCTTCTGTCTTCATCTCCTGAGAAATTGCCCCTCATAAACCCTATCCAGAGATGCCCAATTACTTACTCCGGCTTCAGAACGGCGAGCGTGAACAGAGCTATCCGGCGGCAGCCGCAGAGTCCAGCCGTGTCCGCCACTGAATCTAGGGTTTCTCTCGTCCTTGCTCTCGCCTCTCAAGCTTCCTCTGTCTCTCAACGCCTTTTGGCTGATTTGGCGATGGAGACTGCGAAATATGTGTTTCCCAAGAGATTTGATAGCTCTACTAATCTTGAAGAAGCTTTCATGTCTGTTCCGGATCTCGAGACAATGAACTTTAGAGTTCTATTTAGAACAGACAAGTACGAGATTAGACAAGTTGAGCCTTATTTTGTGGCCGAGACTATAATGCCAGGGGAAACTGGATTTGACTCTTATGGTGCTTCCAAGTCTTTTAATGTTTTAGCTGAGTACCTCTTTGGTAAGAACACAATAAAGGAGAAAATGGAGATGACGACCCCTGTTGTTACTCGGAAAGTCCAATCTGTTGGAGAGAAGATGGAAATGACAACTCCAGTGATAACTAGCAAGGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCCATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAGTGCCACGAAAGATTGTTGCTGTTGTCGCCTTCTCAGGCTATGTTACCGATGAAGAGATTGAGAGACGGGAGAGAGAACTAAGGAGAGCTCTTCAAAATGACAAGAAGTTCCGAGTGAGAGATGGAGTATCATTTGAAGTTGCACAGTATAATCCACCATTCACTCTCCCGTTTATGCGCCGCAACGAGGTCTCTCTCGAAGTTGAAAACAAAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

309

Amino Acids

35.03

Weight (kDa)

9.26

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	114 - 184	8.3e-15	SOUL heme-binding protein
SOUL	PF04832	190 - 302	3.6e-32	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	5 cut(s)	148, 155, 174, 631, 889
AclWI	GGATC	2 cut(s)	345, 680
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	667, 699
AcuI	CTGAAG	2 cut(s)	100, 675
AfaI	GTAC	2 cut(s)	383, 491
AfiI	CCNNNNNNNGG	1 cut(s)	895
AgsI	TTSAA	4 cut(s)	314, 803, 845, 914
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	2 cut(s)	673, 705
AluBI	AGCT	7 cut(s)	15, 140, 221, 300, 320, 485, 797
AluI	AGCT	7 cut(s)	15, 140, 221, 300, 320, 485, 797
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	6 cut(s)	235, 257, 338, 413, 766, 904
AlwI	GGATC	2 cut(s)	345, 680
Ama87I	CYCGRG	1 cut(s)	341
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	667, 699
AspLEI	GCGC	1 cut(s)	888
AsuII	TTCGAA	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	799
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	3 cut(s)	253, 571, 824
BceAI	ACGGC	2 cut(s)	138, 152
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	6 cut(s)	235, 257, 338, 413, 766, 904
BfaI	CTAG	2 cut(s)	186, 603
BisI	GCNGC	4 cut(s)	149, 152, 155, 889
BlsI	GCNGC	4 cut(s)	150, 153, 156, 890
Bme1390I	CCNGG	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	895
Bse1I	ACTGG	3 cut(s)	445, 593, 625
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	32, 639
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	895
BseMII	CTCAG	3 cut(s)	51, 477, 756
BseNI	ACTGG	3 cut(s)	445, 593, 625
BseRI	GAGGAG	2 cut(s)	7, 10
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	111, 145, 335
BslI	CCNNNNNNNGG	1 cut(s)	895
BsmAI	GTCTC	6 cut(s)	235, 257, 338, 413, 766, 904
BsmBI	CGTCTC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	904
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	799
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	9, 337, 616, 685
BspACI	CCGC	5 cut(s)	148, 155, 174, 631, 889
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	3 cut(s)	52, 478, 755
BspEI	TCCGGA	1 cut(s)	334
BspPI	GGATC	2 cut(s)	345, 680
BspQI	GCTCTTC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	904
BsrI	ACTGG	3 cut(s)	445, 593, 625
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	4 cut(s)	9, 337, 616, 685
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	855
Bst6I	CTCTTC	3 cut(s)	48, 756, 804
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	4 cut(s)	60, 486, 742, 788
BstF5I	GGATG	2 cut(s)	32, 639
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	4 cut(s)	12, 340, 619, 688
BstMAI	GTCTC	6 cut(s)	235, 257, 338, 413, 766, 904
BstMBI	GATC	4 cut(s)	9, 337, 616, 685
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 173, 218, 254, 734
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	337, 685
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	337, 685
BsuRI	GGCC	1 cut(s)	416
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	32, 639
BtsIMutI	CAGTG	3 cut(s)	177, 600, 632
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	888
Csp6I	GTAC	2 cut(s)	382, 490
CspCI	CAANNNNNGTGG	2 cut(s)	608, 643
CviAII	CATG	2 cut(s)	325, 646
CviQI	GTAC	2 cut(s)	382, 490
DdeI	CTNAG	4 cut(s)	60, 486, 742, 788
DpnI	GATC	4 cut(s)	11, 339, 618, 687
DpnII	GATC	4 cut(s)	9, 337, 616, 685
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	48, 756, 804
EarI	CTCTTC	3 cut(s)	48, 756, 804
EciI	GGCGGA	2 cut(s)	163, 646
Ecl136II	GAGCTC	1 cut(s)	797
Eco24I	GRGCYC	1 cut(s)	799
Eco31I	GGTCTC	1 cut(s)	904
Eco53kI	GAGCTC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	100, 675
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	799
Esp3I	CGTCTC	1 cut(s)	766
FaeI	CATG	2 cut(s)	328, 649
FatI	CATG	2 cut(s)	324, 645
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	4 cut(s)	149, 152, 155, 889
FokI	GGATG	2 cut(s)	19, 646
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	4 cut(s)	149, 152, 155, 889
FspBI	CTAG	2 cut(s)	186, 603
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	4 cut(s)	149, 152, 155, 889
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	3 cut(s)	111, 145, 335
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	2 cut(s)	328, 649
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	219, 318
HinfI	GANTC	3 cut(s)	160, 182, 449
HpaII	CCGG	3 cut(s)	111, 145, 335
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	119, 552, 821
Hpy188III	TCNNGA	7 cut(s)	59, 88, 311, 335, 341, 343, 905
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	699, 748
HpyCH4III	ACNGT	1 cut(s)	855
HpyCH4V	TGCA	1 cut(s)	851
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 173, 218, 254, 734
HpyF3I	CTNAG	4 cut(s)	60, 486, 742, 788
Hsp92II	CATG	2 cut(s)	328, 649
HspAI	GCGC	1 cut(s)	886
Kpn2I	TCCGGA	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	9, 337, 616, 685
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	186, 603
MaeIII	GTNAC	2 cut(s)	544, 751
MalI	GATC	4 cut(s)	11, 339, 618, 687
MboI	GATC	4 cut(s)	9, 337, 616, 685
MboII	GAAGA	6 cut(s)	35, 42, 326, 586, 773, 791
MflI	RGATCY	2 cut(s)	337, 685
MhlI	GDGCHC	1 cut(s)	799
MluCI	AATT	4 cut(s)	65, 99, 667, 699
MlyI	GAGTC	2 cut(s)	169, 443
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	8 cut(s)	28, 31, 83, 223, 235, 503, 661, 889
MroI	TCCGGA	1 cut(s)	334
MseI	TTAA	1 cut(s)	474
MspI	CCGG	3 cut(s)	111, 145, 335
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	5 cut(s)	154, 173, 218, 254, 734
NdeII	GATC	4 cut(s)	9, 337, 616, 685
NlaIII	CATG	2 cut(s)	328, 649
NmeAIII	GCCGAG	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	804
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	150, 153, 156, 890
PleI	GAGTC	2 cut(s)	168, 443
PpsI	GAGTC	2 cut(s)	168, 443
Psp124BI	GAGCTC	1 cut(s)	799
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	337, 685
RsaI	GTAC	2 cut(s)	383, 491
RsaNI	GTAC	2 cut(s)	382, 490
SacI	GAGCTC	1 cut(s)	799
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	149, 152, 155, 889
Sau3AI	GATC	4 cut(s)	9, 337, 616, 685
SchI	GAGTC	2 cut(s)	169, 443
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	799
SetI	ASST	9 cut(s)	17, 142, 223, 302, 322, 487, 495, 799, 900
SfaNI	GCATC	1 cut(s)	83
Sfr274I	CTCGAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	216, 341
SmoI	CTYRAG	2 cut(s)	216, 341
Sse9I	AATT	4 cut(s)	65, 99, 667, 699
SsiI	CCGC	5 cut(s)	148, 155, 174, 631, 889
SspMI	CTAG	2 cut(s)	186, 603
SstI	GAGCTC	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	855
TaqI	TCGA	3 cut(s)	342, 665, 906
TasI	AATT	4 cut(s)	65, 99, 667, 699
TauI	GCSGC	3 cut(s)	151, 157, 891
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	3 cut(s)	184, 600, 632
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	42, 313, 365, 774
TspRI	CASTG	3 cut(s)	184, 600, 632
XapI	RAATTY	2 cut(s)	667, 699
XhoI	CTCGAG	1 cut(s)	341
XspI	CTAG	2 cut(s)	186, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.