Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Reverse (-)

30691513 .. 30693940

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTGTTTTTTTCCGGACCTGGAAACGGTGAAGTTCAAAGTGTTGAGTAGGAGAGACCAGTATGAGATCAGAGAAGTTGAGCCTTACTTTATAGCAGAGGTGACAATGCCTGGAAAGAGTGGTTTTGATTTTAATGGTGCTTCGCAATCGTTCAATGTCTTAGCTGAATACCTGTTTGGTAAGAATACCACAAAGGAGAAAATGGAGATGACCACACCGGTTTTTACACGTAAAGCTCAATCTGATGGAGAGAAAATGGAAATGACAACTCCAGTGATAACAAAGAGGGTGGAAAATGAAGATAAGTGGCAGATGTCCTTTGTCATGCCCTCAAAATACGGTGCCAATTTGCCATTGCCTAAAGATCCATCTGTAAAGGTCAAAGAGGTTCCAAAGAAATTAGTTGCAGTTGTTGCCTTTTCTGGTTTTGTCACTGATGAGGAAATTAAGCAACGGGAATCCAAGTTAAGGGAAGCTTTGAAAGATGATAGACGGTTCCAAGTGAAGCAGGGCACTTCAGTGGAAGTTGCACAGTATAACCCACCATTTACGCTTCCATTTCAACGGCGTAATGAGATCAGTCTGGAAGTTGAAAGTAAAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

203

Amino Acids

23.35

Weight (kDa)

6.5

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	7 - 77	2e-16	SOUL heme-binding protein
SOUL	PF04832	78 - 195	9.9e-34	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	13
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	25, 468
AflIII	ACRYGT	1 cut(s)	227
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	37, 154, 481, 563, 593
AjnI	CCWGG	2 cut(s)	18, 109
AjuI	GAANNNNNNNTTGG	2 cut(s)	159, 191
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	3 cut(s)	164, 236, 476
AluI	AGCT	3 cut(s)	164, 236, 476
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	13
AsiGI	ACCGGT	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	40, 112
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	341
BccI	CCATC	2 cut(s)	239, 376
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	20, 111
BcoDI	GTCTC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	20, 111
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	343, 390, 497
BmrFI	CCNGG	2 cut(s)	20, 111
BpmI	CTGGAG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	48
BsaWI	WCCGGW	2 cut(s)	13, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 468
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	58, 272
Bse3DI	GCAATG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	13
BseBI	CCWGG	2 cut(s)	20, 111
BseLI	CCNNNNNNNGG	2 cut(s)	25, 468
BseMI	GCAATG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	58, 272
BseSI	GKGCMC	1 cut(s)	515
BshNI	GGYRCC	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	14, 218
BslI	CCNNNNNNNGG	2 cut(s)	25, 468
BsmAI	GTCTC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	66, 364, 576
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	3 cut(s)	343, 390, 497
BspPI	GGATC	1 cut(s)	359
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	58, 272
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	3 cut(s)	66, 364, 576
Bst2UI	CCWGG	2 cut(s)	20, 111
Bst4CI	ACNGT	4 cut(s)	28, 341, 495, 534
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	69, 367, 579
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	66, 364, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	2 cut(s)	20, 111
BstSCI	CCNGG	2 cut(s)	18, 109
BstSLI	GKGCMC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtsIMutI	CAGTG	3 cut(s)	279, 432, 525
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	4 cut(s)	82, 164, 236, 476
CviKI_1	RGCY	4 cut(s)	82, 164, 236, 476
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	3 cut(s)	68, 366, 578
DpnII	GATC	3 cut(s)	66, 364, 576
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	18, 109
FaeI	CATG	1 cut(s)	328
FaiI	YATR	4 cut(s)	63, 92, 326, 537
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FatI	CATG	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	255
HapII	CCGG	2 cut(s)	14, 218
Hin1II	CATG	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	2 cut(s)	14, 218
HphI	GGTGA	2 cut(s)	40, 112
Hpy188I	TCNGA	2 cut(s)	71, 244
Hpy188III	TCNNGA	2 cut(s)	14, 584
HpyCH4III	ACNGT	4 cut(s)	28, 341, 495, 534
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	407, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	328
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	66, 364, 576
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	2 cut(s)	100, 430
MalI	GATC	3 cut(s)	68, 366, 578
MboI	GATC	3 cut(s)	66, 364, 576
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	3 cut(s)	346, 398, 444
MnlI	CCTC	6 cut(s)	91, 279, 340, 379, 433, 595
MroI	TCCGGA	1 cut(s)	13
MseI	TTAA	3 cut(s)	132, 447, 467
MslI	CAYNNNNRTG	1 cut(s)	518
MspI	CCGG	2 cut(s)	14, 218
MspR9I	CCNGG	2 cut(s)	20, 111
MvaI	CCWGG	2 cut(s)	20, 111
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	3 cut(s)	66, 364, 576
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	3 cut(s)	343, 390, 497
NmuCI	GTSAC	2 cut(s)	100, 430
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	458
PinAI	ACCGGT	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	18, 109
PspGI	CCWGG	2 cut(s)	18, 109
PspN4I	GGNNCC	3 cut(s)	343, 390, 497
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	132, 447, 467
Sau3AI	GATC	3 cut(s)	66, 364, 576
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	20, 111
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	9 cut(s)	21, 102, 166, 174, 232, 238, 381, 390, 478
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	346, 398, 444
StyD4I	CCNGG	2 cut(s)	18, 109
TaaI	ACNGT	4 cut(s)	28, 341, 495, 534
TaiI	ACGT	1 cut(s)	232
TasI	AATT	3 cut(s)	346, 398, 444
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	132, 447, 467
Tru9I	TTAA	3 cut(s)	132, 447, 467
TscAI	CASTG	3 cut(s)	279, 439, 525
TseFI	GTSAC	2 cut(s)	100, 430
Tsp45I	GTSAC	2 cut(s)	100, 430
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	3 cut(s)	279, 439, 525
VpaK11BI	GGWCC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.