Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Reverse (-)

13757930 .. 13760714

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G109600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAACAATGTTGTTCACTCAAACAGTCCCATCCAAAACCCTAACCTGCACATCCCTCTCAGGAAGAAACCTTAACAGTAACAGACTCATCTCCATCTCCATGGCCACGGGCCGAGCCACCACCGCCGTGCCCTCTCCGCCTCAGCGAAGAAGAACCATGTCCGCTCTCGAAGCCCGAATCTCCCTCGTCGCCGCTCTCGCTTCTCAAGCCTCATCTGTCTCCCAGAGACTTTTACTCGAATTGGCCACGGAGACTGCCAAATACGTCTTCCCCAAAAACTTCGAGGCTCGTACTCTCGAAGAAGCCCTCATGTCAGTTCCGGACCTCGAAACGGTGAAGTTCAAAGTTCTGAGTAGGAGAGACCAGTATGAAATTAGAGAAGTGGAGCCTTACTTTATAGCGGAGACTACAATGTCTGGAAAGACTGGTTTTGATTTCAATGGTGCATCTCAATCCTTCAATGTCTTGGCTGAGTACCTGTTTGGTAAGAATACAACAAAGGAAAAAATGGAGATGACCACACCAGTTTTTACACGTAAAGCTCAATCTGATGGGGTGAAAATGGAAATGACAACTCCAGTGATAACAACGAGGCTGGAAGATCAAGATAAGTGGCAGATGTCCTTTGTCATTCCCTCAAAGTACGGTGCCAATTCACCATTGCCTAAAGATCCATCTGTAAGGATCACAGAGGTTCCAAGGAAAATAGTTGCAGCTGTTGCCTTTTCAGGTTTTGTTACTGACGAAGAAGTTAAGCGACGGGAATCCAAGTTAAGGGAAGCTTTGAAAAAAGATGGACAGTTCCAAGTGGAGGAGGGAACTTCAGTTGAAGTTGCACAGTATAATCCACCATTTACACTTCCATTTCAACGGCGTAATGAGATCAGTCTGGAAGTCGAAAGTAAAGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

306

Amino Acids

34.2

Weight (kDa)

9.02

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	415
Acc36I	ACCTGC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	650
AccBSI	CCGCTC	2 cut(s)	167, 197
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	5 cut(s)	126, 140, 165, 195, 404
AclWI	GGATC	2 cut(s)	668, 695
AcoI	YGGCCR	2 cut(s)	105, 246
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	3 cut(s)	295, 479, 647
AfiI	CCNNNNNNNGG	3 cut(s)	334, 777, 814
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	346, 442, 463, 790, 833, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	3 cut(s)	545, 719, 785
AluI	AGCT	3 cut(s)	545, 719, 785
Alw26I	GTCTC	5 cut(s)	223, 226, 248, 357, 401
AlwI	GGATC	2 cut(s)	668, 695
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	3 cut(s)	105, 112, 246
ApeKI	GCWGC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	112, 325
AsuHPI	GGTGA	3 cut(s)	349, 571, 651
AvaII	GGWCC	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	2 cut(s)	107, 248
BanI	GGYRCC	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	262
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	5 cut(s)	40, 104, 548, 685, 791
BceAI	ACGGC	2 cut(s)	113, 890
BcoDI	GTCTC	5 cut(s)	223, 226, 248, 357, 401
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	195, 717
BlsI	GCNGC	2 cut(s)	196, 718
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	2 cut(s)	112, 325
BmiI	GGNNCC	3 cut(s)	390, 652, 699
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	539
BsaI	GGTCTC	1 cut(s)	357
BsaJI	CCNNGG	4 cut(s)	102, 108, 249, 701
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 777, 814
Bse1I	ACTGG	4 cut(s)	367, 433, 527, 581
Bse3DI	GCAATG	1 cut(s)	662
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	4 cut(s)	102, 108, 249, 701
BseGI	GGATG	2 cut(s)	32, 53
BseLI	CCNNNNNNNGG	3 cut(s)	334, 777, 814
BseMI	GCAATG	1 cut(s)	662
BseMII	CTCAG	4 cut(s)	75, 158, 344, 465
BseNI	ACTGG	4 cut(s)	367, 433, 527, 581
BseRI	GAGGAG	1 cut(s)	830
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	728
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	107, 114, 248
BshNI	GGYRCC	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	3 cut(s)	334, 777, 814
BsmAI	GTCTC	5 cut(s)	223, 226, 248, 357, 401
BsmFI	GGGAC	1 cut(s)	14
BsnI	GGCC	3 cut(s)	107, 114, 248
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	604, 673, 687, 885
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	5 cut(s)	126, 140, 165, 195, 404
BspANI	GGCC	3 cut(s)	107, 114, 248
BspCNI	CTCAG	4 cut(s)	74, 157, 345, 466
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	390, 652, 699
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	668, 695
BspT107I	GGYRCC	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	357
BsrBI	CCGCTC	2 cut(s)	167, 197
BsrDI	GCAATG	1 cut(s)	662
BsrI	ACTGG	4 cut(s)	367, 433, 527, 581
BssECI	CCNNGG	4 cut(s)	102, 108, 249, 701
BssMI	GATC	4 cut(s)	604, 673, 687, 885
BssT1I	CCWWGG	2 cut(s)	102, 701
Bst4CI	ACNGT	6 cut(s)	28, 80, 337, 650, 804, 843
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstBAI	YACGTR	1 cut(s)	539
BstDEI	CTNAG	4 cut(s)	61, 144, 353, 474
BstDSI	CCRYGG	3 cut(s)	102, 108, 249
BstF5I	GGATG	2 cut(s)	32, 53
BstKTI	GATC	4 cut(s)	607, 676, 690, 888
BstMAI	GTCTC	5 cut(s)	223, 226, 248, 357, 401
BstMBI	GATC	4 cut(s)	604, 673, 687, 885
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 139, 173, 200, 209, 722
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	728
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	673
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	3 cut(s)	107, 114, 248
BtgI	CCRYGG	3 cut(s)	102, 108, 249
BtsCI	GGATG	2 cut(s)	32, 53
BtsIMutI	CAGTG	1 cut(s)	588
BveI	ACCTGC	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	112, 325
Csp6I	GTAC	3 cut(s)	294, 478, 646
CspCI	CAANNNNNGTGG	2 cut(s)	596, 631
CviAII	CATG	3 cut(s)	103, 160, 313
CviQI	GTAC	3 cut(s)	294, 478, 646
DdeI	CTNAG	4 cut(s)	61, 144, 353, 474
DpnI	GATC	4 cut(s)	606, 675, 689, 887
DpnII	GATC	4 cut(s)	604, 673, 687, 885
DrdI	GACNNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	105, 246
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	2 cut(s)	102, 701
Eco31I	GGTCTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	810
EcoT14I	CCWWGG	2 cut(s)	102, 701
ErhI	CCWWGG	2 cut(s)	102, 701
FaeI	CATG	3 cut(s)	106, 163, 316
FaiI	YATR	6 cut(s)	104, 161, 314, 372, 401, 846
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	3 cut(s)	102, 159, 312
Fnu4HI	GCNGC	2 cut(s)	195, 717
FokI	GGATG	2 cut(s)	19, 40
Fsp4HI	GCNGC	2 cut(s)	195, 717
GluI	GCNGC	2 cut(s)	195, 717
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	107, 114, 248
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	106, 163, 316
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	3 cut(s)	87, 180, 767
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	3 cut(s)	349, 571, 651
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	354, 553
Hpy188III	TCNNGA	7 cut(s)	63, 170, 299, 323, 420, 608, 893
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	2 cut(s)	194, 765
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	6 cut(s)	28, 80, 337, 650, 804, 843
HpyCH4IV	ACGT	2 cut(s)	267, 538
HpyCH4V	TGCA	4 cut(s)	51, 449, 716, 839
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 139, 173, 200, 209, 722
HpyF3I	CTNAG	4 cut(s)	61, 144, 353, 474
HpySE526I	ACGT	2 cut(s)	267, 538
Hsp92II	CATG	3 cut(s)	106, 163, 316
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	604, 673, 687, 885
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	728
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	2 cut(s)	267, 538
MaeIII	GTNAC	2 cut(s)	80, 739
MalI	GATC	4 cut(s)	606, 675, 689, 887
MbiI	CCGCTC	2 cut(s)	167, 197
MboI	GATC	4 cut(s)	604, 673, 687, 885
MboII	GAAGA	7 cut(s)	78, 162, 165, 262, 314, 614, 761
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	2 cut(s)	107, 248
MluCI	AATT	3 cut(s)	242, 375, 655
MluNI	TGGCCA	2 cut(s)	107, 248
MlyI	GAGTC	1 cut(s)	81
Mox20I	TGGCCA	2 cut(s)	107, 248
MroI	TCCGGA	1 cut(s)	322
MscI	TGGCCA	2 cut(s)	107, 248
MseI	TTAA	3 cut(s)	75, 756, 776
MslI	CAYNNNNRTG	2 cut(s)	101, 128
Msp20I	TGGCCA	2 cut(s)	107, 248
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	6 cut(s)	125, 139, 173, 200, 209, 722
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	4 cut(s)	604, 673, 687, 885
NlaIII	CATG	3 cut(s)	106, 163, 316
NlaIV	GGNNCC	3 cut(s)	390, 652, 699
NmeAIII	GCCGAG	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	180, 767
PkrI	GCNGC	2 cut(s)	196, 718
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	539
PspN4I	GGNNCC	3 cut(s)	390, 652, 699
PspPI	GGNCC	2 cut(s)	112, 325
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	295, 479, 647
RsaNI	GTAC	3 cut(s)	294, 478, 646
RseI	CAYNNNNRTG	2 cut(s)	101, 128
SaqAI	TTAA	3 cut(s)	75, 756, 776
SatI	GCNGC	2 cut(s)	195, 717
Sau3AI	GATC	4 cut(s)	604, 673, 687, 885
Sau96I	GGNCC	2 cut(s)	112, 325
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	458
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	101, 128
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	3 cut(s)	242, 375, 655
SsiI	CCGC	5 cut(s)	126, 140, 165, 195, 404
StyI	CCWWGG	2 cut(s)	102, 701
TaaI	ACNGT	6 cut(s)	28, 80, 337, 650, 804, 843
TaiI	ACGT	2 cut(s)	270, 541
TaqI	TCGA	6 cut(s)	171, 240, 285, 300, 330, 900
TasI	AATT	3 cut(s)	242, 375, 655
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	180, 767
Tru1I	TTAA	3 cut(s)	75, 756, 776
Tru9I	TTAA	3 cut(s)	75, 756, 776
TscAI	CASTG	1 cut(s)	588
TseI	GCWGC	1 cut(s)	716
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.