Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007035.1

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Reverse (-)

24157 .. 26763

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007035.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgttcacctgtactactcccctctcacgaaaccctaaccgactcaccgccacaatctccatggccgccgaccgcgccgcagcaccttctccgccgcagcgaagaaggaccatgtccgctctcgaagcccgaatctccctcgtcgccgctctcgccgcccaagcctccaccgtctcgcagcgacttttgctcgatttggccaccgagacggccaggtacgtcttccccaagcagttcgaggctcggactctcgaggaagctctcatgtcagttccggacctggaaacggtgaagttcaaagtgttgagtaggagagagcagtatgagattagagaagttgagccttactttatagcagaggtgacaatgcctggaaagagtggttttgatttaaatggtgcttcacaatcgttcaatgtcttagctgaatacctgtttggtaagaataccacaagggagaaaatggagatgaccacaccggtttttacacgtaaagctcaatctgatggagagaaaatggaaatgacaactccagtgataacaaagagggtggaaaatgaagataagtggcagatgtcctttgtcatgccctcaaaatacggtgccaatttgccattgcctaaagatccatctgtaaaggtcaaagaggttccaaagaaattagttgcagttgttgccttttctggttttgtcactgatgaggaaattaagcaacgggaatccaagttaagggaagctttgaaagatgatagacagttccaagtgaagcagggcacttcagtggaagttgcacagtataacccaccatttacgcttccatttcaacggcgtaatgagatcagtctggaagttgaaagtaaagaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

289

Amino Acids

32.7

Weight (kDa)

8.8

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	2 cut(s)	119, 149
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	274
AciI	CCGC	9 cut(s)	48, 66, 73, 78, 92, 95, 117, 147, 156
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	3 cut(s)	63, 198, 210
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	13, 218
AfiI	CCNNNNNNNGG	2 cut(s)	286, 729
AflIII	ACRYGT	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	478
AgsI	TTSAA	5 cut(s)	298, 415, 742, 824, 854
AjnI	CCWGG	3 cut(s)	212, 279, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AleI	CACNNNNGTG	1 cut(s)	779
AluBI	AGCT	4 cut(s)	260, 425, 497, 737
AluI	AGCT	4 cut(s)	260, 425, 497, 737
Alw26I	GTCTC	2 cut(s)	178, 200
AlwI	GGATC	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	274
AoxI	GGCC	3 cut(s)	63, 198, 210
ApeKI	GCWGC	3 cut(s)	80, 97, 178
AsiGI	ACCGGT	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	108, 277
AsuHPI	GGTGA	3 cut(s)	37, 301, 373
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	2 cut(s)	108, 277
BaeGI	GKGCMC	1 cut(s)	776
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	92, 109, 190
BccI	CCATC	2 cut(s)	500, 637
BceAI	ACGGC	2 cut(s)	225, 842
BciT130I	CCWGG	3 cut(s)	214, 281, 372
BcoDI	GTCTC	2 cut(s)	178, 200
BisI	GCNGC	8 cut(s)	66, 78, 81, 95, 98, 147, 156, 179
BlsI	GCNGC	8 cut(s)	67, 79, 82, 96, 99, 148, 157, 180
Bme1390I	CCNGG	3 cut(s)	214, 281, 372
Bme18I	GGWCC	2 cut(s)	108, 277
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	108, 277
BmiI	GGNNCC	2 cut(s)	604, 651
BmrFI	CCNGG	3 cut(s)	214, 281, 372
BpiI	GAAGAC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	516
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	2 cut(s)	274, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 729
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	533
Bse3DI	GCAATG	1 cut(s)	614
BseAI	TCCGGA	1 cut(s)	274
BseBI	CCWGG	3 cut(s)	214, 281, 372
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	286, 729
BseMI	GCAATG	1 cut(s)	614
BseNI	ACTGG	1 cut(s)	533
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	3 cut(s)	92, 109, 190
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	65, 200, 212
BshNI	GGYRCC	1 cut(s)	602
BshTI	ACCGGT	1 cut(s)	478
BsiEI	CGRYCG	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	275, 479
BslI	CCNNNNNNNGG	2 cut(s)	286, 729
BsmAI	GTCTC	2 cut(s)	178, 200
BsmBI	CGTCTC	2 cut(s)	178, 200
BsnI	GGCC	3 cut(s)	65, 200, 212
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp13I	TCCGGA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	625, 837
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	9 cut(s)	48, 66, 73, 78, 92, 95, 117, 147, 156
BspANI	GGCC	3 cut(s)	65, 200, 212
BspEI	TCCGGA	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	604, 651
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	2 cut(s)	119, 149
BsrDI	GCAATG	1 cut(s)	614
BsrFI	RCCGGY	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	625, 837
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	3 cut(s)	214, 281, 372
Bst4CI	ACNGT	5 cut(s)	172, 289, 602, 756, 795
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	491
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	628, 840
BstMAI	GTCTC	2 cut(s)	178, 200
BstMBI	GATC	2 cut(s)	625, 837
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 125, 152, 155, 161, 187, 674
BstNI	CCWGG	3 cut(s)	214, 281, 372
BstSCI	CCNGG	3 cut(s)	212, 279, 370
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	92, 109, 190
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	65, 200, 212
BtgI	CCRYGG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	540, 693, 786
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	108, 277
Csp6I	GTAC	2 cut(s)	12, 217
CspAI	ACCGGT	1 cut(s)	478
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	4 cut(s)	61, 112, 265, 586
CviQI	GTAC	2 cut(s)	12, 217
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	627, 839
DpnII	GATC	2 cut(s)	625, 837
DraI	TTTAAA	1 cut(s)	393
EaeI	YGGCCR	3 cut(s)	63, 198, 210
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	108, 277
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	212, 279, 370
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	178, 200
FaeI	CATG	4 cut(s)	64, 115, 268, 589
FaiI	YATR	7 cut(s)	62, 113, 266, 324, 353, 587, 798
FalI	AAGNNNNNCTT	2 cut(s)	721, 753
FatI	CATG	4 cut(s)	60, 111, 264, 585
Fnu4HI	GCNGC	8 cut(s)	66, 78, 81, 95, 98, 147, 156, 179
Fsp4HI	GCNGC	8 cut(s)	66, 78, 81, 95, 98, 147, 156, 179
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	8 cut(s)	66, 78, 81, 95, 98, 147, 156, 179
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	65, 200, 212
HapII	CCGG	2 cut(s)	275, 479
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	64, 115, 268, 589
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	4 cut(s)	42, 132, 247, 719
HpaII	CCGG	2 cut(s)	275, 479
HphI	GGTGA	3 cut(s)	37, 301, 373
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	246, 505
Hpy188III	TCNNGA	5 cut(s)	27, 122, 251, 275, 845
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	96, 99
HpyCH4III	ACNGT	5 cut(s)	172, 289, 602, 756, 795
HpyCH4IV	ACGT	2 cut(s)	219, 490
HpyCH4V	TGCA	2 cut(s)	668, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 125, 152, 155, 161, 187, 674
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	2 cut(s)	219, 490
Hsp92II	CATG	4 cut(s)	64, 115, 268, 589
HspAI	GCGC	1 cut(s)	75
Kpn2I	TCCGGA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	625, 837
Lsp1109I	GCAGC	3 cut(s)	92, 109, 190
MaeII	ACGT	2 cut(s)	219, 490
MaeIII	GTNAC	2 cut(s)	361, 691
MalI	GATC	2 cut(s)	627, 839
MbiI	CCGCTC	2 cut(s)	119, 149
MboI	GATC	2 cut(s)	625, 837
MboII	GAAGA	3 cut(s)	114, 214, 572
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	776
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	3 cut(s)	607, 659, 705
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	36, 241
Mox20I	TGGCCA	1 cut(s)	200
MroI	TCCGGA	1 cut(s)	274
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	392, 708, 728
MslI	CAYNNNNRTG	1 cut(s)	779
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	275, 479
MspR9I	CCNGG	3 cut(s)	214, 281, 372
MvaI	CCWGG	3 cut(s)	214, 281, 372
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	7 cut(s)	74, 125, 152, 155, 161, 187, 674
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	625, 837
NlaIII	CATG	4 cut(s)	64, 115, 268, 589
NlaIV	GGNNCC	2 cut(s)	604, 651
NmuCI	GTSAC	2 cut(s)	361, 691
OliI	CACNNNNGTG	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	132, 719
PflFI	GACNNNGTC	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	478
PkrI	GCNGC	8 cut(s)	67, 79, 82, 96, 99, 148, 157, 180
PleI	GAGTC	2 cut(s)	36, 241
PpsI	GAGTC	2 cut(s)	36, 241
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	3 cut(s)	212, 279, 370
PspGI	CCWGG	3 cut(s)	212, 279, 370
PspN4I	GGNNCC	2 cut(s)	604, 651
PspPI	GGNCC	2 cut(s)	108, 277
PsuI	RGATCY	1 cut(s)	625
PsyI	GACNNNGTC	1 cut(s)	112
RsaI	GTAC	2 cut(s)	13, 218
RsaNI	GTAC	2 cut(s)	12, 217
RseI	CAYNNNNRTG	1 cut(s)	779
SaqAI	TTAA	3 cut(s)	392, 708, 728
SatI	GCNGC	8 cut(s)	66, 78, 81, 95, 98, 147, 156, 179
Sau3AI	GATC	2 cut(s)	625, 837
Sau96I	GGNCC	2 cut(s)	108, 277
SchI	GAGTC	2 cut(s)	36, 241
ScrFI	CCNGG	3 cut(s)	214, 281, 372
SduI	GDGCHC	1 cut(s)	776
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	2 cut(s)	108, 277
SlaI	CTCGAG	1 cut(s)	251
SmiI	ATTTAAAT	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	607, 659, 705
SsiI	CCGC	9 cut(s)	48, 66, 73, 78, 92, 95, 117, 147, 156
StyD4I	CCNGG	3 cut(s)	212, 279, 370
StyI	CCWWGG	1 cut(s)	60
SwaI	ATTTAAAT	1 cut(s)	393
TaaI	ACNGT	5 cut(s)	172, 289, 602, 756, 795
TaiI	ACGT	2 cut(s)	222, 493
TaqI	TCGA	4 cut(s)	123, 192, 237, 252
TasI	AATT	3 cut(s)	607, 659, 705
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	5 cut(s)	68, 80, 97, 149, 158
TfiI	GAWTC	2 cut(s)	132, 719
Tru1I	TTAA	3 cut(s)	392, 708, 728
Tru9I	TTAA	3 cut(s)	392, 708, 728
TscAI	CASTG	3 cut(s)	540, 700, 786
TseFI	GTSAC	2 cut(s)	361, 691
TseI	GCWGC	3 cut(s)	80, 97, 178
Tsp45I	GTSAC	2 cut(s)	361, 691
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	3 cut(s)	540, 700, 786
Tth111I	GACNNNGTC	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	108, 277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.