Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Forward (+)

12376858 .. 12379166

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTTCTTCACAAAGCTCCCATGTTCCCTCAACCGCCCCAATCCAAAACCCTCACACGAAACCCTAACCGACTCACCGCCACAATCTCCATGGCCGCCGATCGCCCCGCCGTACGTCCTCCGCCGCAGCGAAGAAGAACCATGTCCGCTCTCGAGGCCCGAGTCTCCCTCGTCGCCGCTCTCGCCGCCCAAGCCTCCGCCGTCTCTCAGCGACTTTTGGTTGACTTGGCTACCGAGACGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCAGACTCTCGAGGAAGCTCTCATGTCTGTTCCGGACCTTGAGACGGTGAAGTACAAGGTTTTGAGTAGGAGAGACCAGTATGAGATTCGAGAAGTTGAGCCTTACTTTATAGCAGAGGCAACAATGCCTGGAAAGACTGGTTTTGACTTCAATGGTGCTTCGCAATCGTTCAATGTCTTAGCTGAATACCTGTTTGGTAAGAATACCAAACAGGAGAAAATGGAGATGACCACACCAGTTTTTACGCGTAAAGCTCAATCTGATGGAGAGAAAATGGAAATGACAACTCCAGTGATAACAAAGAGGGTGGAAGATGAAGACAAGTGGAAGATGTCCTTTGTCATGCCCTCGAAATACGGTGCCAATTTGCCATTGCCTAAAGATCCATCTGTAAAGGTCAAAGAGGTTCCAAGGAAATTAGTTGCAGTTGTTGCCTTTTCTGGTTTTGTCACTGATGAGGTAATTAAGCAACGGGAGTCCAAGTTAAGGGAAGCTTTGGAAAATGATAGACAGTTCCAAGTGAAGGAGGGCACTGCAGTGGAAGTTGCACAGTATAACCCGCCATTTACACTTCCATTTCAAAGGCGGAATGAGATCAGTCTGGAAGTTGAAAGTAAAGAGGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

301

Amino Acids

34.01

Weight (kDa)

8.84

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	104 - 174	1.1e-16	SOUL heme-binding protein
SOUL	PF04832	175 - 240	4.9e-16	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	2 cut(s)	149, 179
AccII	CGCG	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	304
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	2 cut(s)	93, 240
AfaI	GTAC	3 cut(s)	114, 248, 326
AfiI	CCNNNNNNNGG	3 cut(s)	316, 759, 796
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	4 cut(s)	424, 445, 854, 884
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	4 cut(s)	236, 268, 450, 482
AleI	CACNNNNGTG	1 cut(s)	809
AluBI	AGCT	5 cut(s)	17, 290, 455, 527, 767
AluI	AGCT	5 cut(s)	17, 290, 455, 527, 767
Alw26I	GTCTC	5 cut(s)	169, 208, 230, 308, 339
AlwI	GGATC	1 cut(s)	650
Ama87I	CYCGRG	3 cut(s)	152, 159, 281
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	3 cut(s)	93, 156, 240
ApeKI	GCWGC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	157, 307
AsuHPI	GGTGA	2 cut(s)	67, 331
AvaI	CYCGRG	3 cut(s)	152, 159, 281
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	1 cut(s)	806
BanI	GGYRCC	1 cut(s)	632
BbsI	GAAGAC	2 cut(s)	244, 597
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	530, 667
BceAI	ACGGC	3 cut(s)	95, 185, 255
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	5 cut(s)	169, 208, 230, 308, 339
BfmI	CTRYAG	1 cut(s)	807
BisI	GCNGC	5 cut(s)	96, 125, 128, 177, 186
BlsI	GCNGC	5 cut(s)	97, 126, 129, 178, 187
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	3 cut(s)	152, 159, 281
BmgT120I	GGNCC	2 cut(s)	157, 307
BmiI	GGNNCC	2 cut(s)	634, 681
BmrFI	CCNGG	1 cut(s)	402
BpiI	GAAGAC	2 cut(s)	244, 597
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	90, 683
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	316, 759, 796
Bse1I	ACTGG	4 cut(s)	349, 415, 509, 563
Bse3DI	GCAATG	1 cut(s)	644
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	90, 683
BseLI	CCNNNNNNNGG	3 cut(s)	316, 759, 796
BseMI	GCAATG	1 cut(s)	644
BseMII	CTCAG	2 cut(s)	221, 287
BseNI	ACTGG	4 cut(s)	349, 415, 509, 563
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	520
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	95, 158, 242
BshNI	GGYRCC	1 cut(s)	632
BsiEI	CGRYCG	1 cut(s)	103
BsiHKCI	CYCGRG	3 cut(s)	152, 159, 281
BsiSI	CCGG	1 cut(s)	305
BsiWI	CGTACG	1 cut(s)	112
BslI	CCNNNNNNNGG	3 cut(s)	316, 759, 796
BsmAI	GTCTC	5 cut(s)	169, 208, 230, 308, 339
BsmBI	CGTCTC	3 cut(s)	208, 230, 308
BsnI	GGCC	3 cut(s)	95, 158, 242
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	3 cut(s)	152, 159, 281
Bsp1286I	GDGCHC	1 cut(s)	806
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	100, 655, 867
Bsp19I	CCATGG	1 cut(s)	90
BspANI	GGCC	3 cut(s)	95, 158, 242
BspCNI	CTCAG	2 cut(s)	220, 286
BspEI	TCCGGA	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	634, 681
BspMAI	CTGCAG	1 cut(s)	811
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	339
BsrBI	CCGCTC	2 cut(s)	149, 179
BsrDI	GCAATG	1 cut(s)	644
BsrI	ACTGG	4 cut(s)	349, 415, 509, 563
BssECI	CCNNGG	2 cut(s)	90, 683
BssMI	GATC	3 cut(s)	100, 655, 867
BssT1I	CCWWGG	2 cut(s)	90, 683
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	4 cut(s)	319, 632, 786, 825
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	207, 273, 451
BstDSI	CCRYGG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	520
BstKTI	GATC	3 cut(s)	103, 658, 870
BstMAI	GTCTC	5 cut(s)	169, 208, 230, 308, 339
BstMBI	GATC	3 cut(s)	100, 655, 867
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 182, 185, 191, 704
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	807
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	244, 597
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	95, 158, 242
BtgI	CCRYGG	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	804, 816
BtsIMutI	CAGTG	4 cut(s)	570, 723, 804, 816
Cfr13I	GGNCC	2 cut(s)	157, 307
Csp6I	GTAC	3 cut(s)	113, 247, 325
CspCI	CAANNNNNGTGG	2 cut(s)	561, 596
CviAII	CATG	5 cut(s)	22, 91, 142, 295, 616
CviQI	GTAC	3 cut(s)	113, 247, 325
DdeI	CTNAG	3 cut(s)	207, 273, 451
DpnI	GATC	3 cut(s)	102, 657, 869
DpnII	GATC	3 cut(s)	100, 655, 867
EaeI	YGGCCR	2 cut(s)	93, 240
EciI	GGCGGA	3 cut(s)	111, 187, 874
Eco130I	CCWWGG	2 cut(s)	90, 683
Eco31I	GGTCTC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	3 cut(s)	152, 159, 281
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	90, 683
ErhI	CCWWGG	2 cut(s)	90, 683
Esp3I	CGTCTC	3 cut(s)	208, 230, 308
FaeI	CATG	5 cut(s)	25, 94, 145, 298, 619
FaiI	YATR	8 cut(s)	23, 92, 143, 296, 354, 383, 617, 828
FalI	AAGNNNNNCTT	6 cut(s)	236, 268, 593, 625, 751, 783
FatI	CATG	5 cut(s)	21, 90, 141, 294, 615
FauI	CCCGC	2 cut(s)	115, 840
Fnu4HI	GCNGC	5 cut(s)	96, 125, 128, 177, 186
Fsp4HI	GCNGC	5 cut(s)	96, 125, 128, 177, 186
GluI	GCNGC	5 cut(s)	96, 125, 128, 177, 186
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	95, 158, 242
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	5 cut(s)	25, 94, 145, 298, 619
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	5 cut(s)	72, 162, 277, 358, 749
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	67, 331
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	276, 535
Hpy188III	TCNNGA	5 cut(s)	152, 281, 305, 362, 875
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	790
HpyCH4III	ACNGT	4 cut(s)	319, 632, 786, 825
HpyCH4IV	ACGT	2 cut(s)	115, 249
HpyCH4V	TGCA	3 cut(s)	698, 809, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 182, 185, 191, 704
HpyF3I	CTNAG	3 cut(s)	207, 273, 451
HpySE526I	ACGT	2 cut(s)	115, 249
Hsp92II	CATG	5 cut(s)	25, 94, 145, 298, 619
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	100, 655, 867
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	2 cut(s)	115, 249
MaeIII	GTNAC	1 cut(s)	721
MalI	GATC	3 cut(s)	102, 657, 869
MbiI	CCGCTC	2 cut(s)	149, 179
MboI	GATC	3 cut(s)	100, 655, 867
MboII	GAAGA	6 cut(s)	144, 147, 244, 596, 602, 613
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	806
MluCI	AATT	3 cut(s)	637, 689, 735
MluI	ACGCGT	1 cut(s)	518
MlyI	GAGTC	4 cut(s)	66, 171, 271, 758
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	2 cut(s)	738, 758
MslI	CAYNNNNRTG	1 cut(s)	809
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	5 cut(s)	155, 182, 185, 191, 704
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	3 cut(s)	100, 655, 867
NlaIII	CATG	5 cut(s)	25, 94, 145, 298, 619
NlaIV	GGNNCC	2 cut(s)	634, 681
NmuCI	GTSAC	1 cut(s)	721
OliI	CACNNNNGTG	1 cut(s)	809
PaeR7I	CTCGAG	2 cut(s)	152, 281
PfeI	GAWTC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	112
PkrI	GCNGC	5 cut(s)	97, 126, 129, 178, 187
Ple19I	CGATCG	1 cut(s)	103
PleI	GAGTC	4 cut(s)	66, 170, 271, 757
PpsI	GAGTC	4 cut(s)	66, 170, 271, 757
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspLI	CGTACG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	634, 681
PspPI	GGNCC	2 cut(s)	157, 307
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	655
PvuI	CGATCG	1 cut(s)	103
RsaI	GTAC	3 cut(s)	114, 248, 326
RsaNI	GTAC	3 cut(s)	113, 247, 325
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	2 cut(s)	738, 758
SatI	GCNGC	5 cut(s)	96, 125, 128, 177, 186
Sau3AI	GATC	3 cut(s)	100, 655, 867
Sau96I	GGNCC	2 cut(s)	157, 307
SchI	GAGTC	4 cut(s)	66, 171, 271, 758
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	806
SfcI	CTRYAG	1 cut(s)	807
Sfr274I	CTCGAG	2 cut(s)	152, 281
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	2 cut(s)	152, 281
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	3 cut(s)	152, 281, 311
SmoI	CTYRAG	3 cut(s)	152, 281, 311
Sse9I	AATT	3 cut(s)	637, 689, 735
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	90, 683
TaaI	ACNGT	4 cut(s)	319, 632, 786, 825
TaiI	ACGT	2 cut(s)	118, 252
TaqI	TCGA	5 cut(s)	153, 267, 282, 361, 623
TasI	AATT	3 cut(s)	637, 689, 735
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	4 cut(s)	98, 127, 179, 188
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	738, 758
Tru9I	TTAA	2 cut(s)	738, 758
TscAI	CASTG	4 cut(s)	570, 730, 811, 816
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	4 cut(s)	570, 730, 811, 816
VpaK11BI	GGWCC	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XhoI	CTCGAG	2 cut(s)	152, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.