Rroxscaffold_7G00191120

Actin depolymerisation factor/cofilin -like domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008357
Physical Location & Seq
Forward (+)
31609459 .. 31614188
4730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191120.1

Sequence Viewer

Length: 540 bp
ATGCTGGGAAAGACTGGTTTTGATTTCAATGGTGCTTCACAATCATTCAATGTCTTAGCTAAATACCTGTTTGGTAAGAATACCACAAAGGAGAAAATGGAGATGACCACACCGGTTTTTATGCATAAAACTCAATCTGATGAAGAGAAAATGGAAATGACAACTCTAACGATAACAAACACTTGTAAAGGCACAGACTATATTGCCAAGCTTTGCCCTGAGAAAGCTGAGTCGGATAAGCACAAGGTATATATATGCTTGTTTTGTCGACAACGCGGGCATAGTTTGAAGAATTGCAGTAAGAAGAATGAGAATGATATGGAGGGAAGTTATGTTATAATTGTGGGGAAACCGGGCATTTGTTTTCTAGATACCCCTTACCTCTTCAAGATGGATAGCTCACTCTCAATTTTGAAGGCAAGGGTTATTCCTAGTCCTTTTTCATATGACACAAAGACTATGCTGGCATATGAGAGTGAGGACTGGGAAGGATGCCTCCTCTGCTGTAATAATCCAAAGCTCAAGAAGCAACATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

179

Amino Acids

20.39

Weight (kDa)

8.65

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 10 - 53 1.4e-08 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccI GTMKAC 1 cut(s) 268
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 5 cut(s) 28, 49, 289, 388, 415
AluBI AGCT 5 cut(s) 59, 211, 227, 399, 520
AluI AGCT 5 cut(s) 59, 211, 227, 399, 520
AsiGI ACCGGT 1 cut(s) 112
AsuC2I CCSGG 1 cut(s) 354
BccI CCATC 1 cut(s) 385
BcnI CCSGG 1 cut(s) 354
BfaI CTAG 2 cut(s) 368, 432
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 1 cut(s) 482
BmuI ACTGGG 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 2 cut(s) 19, 488
BseGI GGATG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 210, 219
BseNI ACTGG 2 cut(s) 19, 488
BseRI GAGGAG 1 cut(s) 488
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 276
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 2 cut(s) 113, 353
BspACI CCGC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 211, 220
BspFNI CGCG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 2 cut(s) 19, 488
BssAI RCCGGY 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 138, 389
BstC8I GCNNGC 2 cut(s) 278, 465
BstDEI CTNAG 3 cut(s) 55, 219, 228
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 501, 526
BstSCI CCNGG 1 cut(s) 352
BstUI CGCG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 278, 465
Cfr10I RCCGGY 1 cut(s) 112
CspAI ACCGGT 1 cut(s) 112
CviJI RGCY 5 cut(s) 59, 211, 227, 399, 520
CviKI_1 RGCY 5 cut(s) 59, 211, 227, 399, 520
DdeI CTNAG 3 cut(s) 55, 219, 228
Eam1104I CTCTTC 2 cut(s) 138, 389
EarI CTCTTC 2 cut(s) 138, 389
EcoT22I ATGCAT 1 cut(s) 126
FauI CCCGC 1 cut(s) 269
FauNDI CATATG 2 cut(s) 445, 469
FblI GTMKAC 1 cut(s) 268
FokI GGATG 1 cut(s) 504
FspBI CTAG 2 cut(s) 368, 432
GsaI CCCAGC 1 cut(s) 8
HapII CCGG 2 cut(s) 113, 353
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 1 cut(s) 230
HpaII CCGG 2 cut(s) 113, 353
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 139, 235
Hpy188III TCNNGA 3 cut(s) 368, 388, 523
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 409, 482
HpyCH4V TGCA 2 cut(s) 124, 297
HpyF10VI GCNNNNNNNGC 2 cut(s) 501, 526
HpyF3I CTNAG 3 cut(s) 55, 219, 228
LpnPI CCDG 6 cut(s) 80, 126, 231, 366, 449, 469
LweI GCATC 1 cut(s) 482
MaeI CTAG 2 cut(s) 368, 432
MboII GAAGA 4 cut(s) 155, 301, 316, 376
MluCI AATT 3 cut(s) 292, 339, 408
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 5 cut(s) 316, 392, 472, 506, 509
Mph1103I ATGCAT 1 cut(s) 126
MspI CCGG 2 cut(s) 113, 353
MspR9I CCNGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 501, 526
NciI CCSGG 1 cut(s) 354
NdeI CATATG 2 cut(s) 445, 469
NsiI ATGCAT 1 cut(s) 126
PinAI ACCGGT 1 cut(s) 112
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PsiI TTATAA 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 4
SalI GTCGAC 1 cut(s) 267
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 354
SetI ASST 8 cut(s) 61, 69, 213, 229, 249, 384, 401, 522
SfaNI GCATC 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 3 cut(s) 292, 339, 408
SsiI CCGC 1 cut(s) 276
SspMI CTAG 2 cut(s) 368, 432
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 1 cut(s) 268
TasI AATT 3 cut(s) 292, 339, 408
TspDTI ATGAA 2 cut(s) 156, 432
XbaI TCTAGA 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 2 cut(s) 368, 432
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.