Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008357

Physical Location & Seq

Genomic Coordinates Forward (+)

19423222 .. 19431029

Gene Structure 7808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG210500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTTCTTCACCAAGCTCCAATGTTCACCTGTACTACTCCCCTCACACGAAACCCTAACCGACTCACCGCCACAACCTCCATGGCCGCCGACCGCGCCGCAGCACCTTCTCCGCCGCAGCGAAGAAGGACCATGTCCGCTCTCGAAGCCCGAATCTCCCTCGTCGCCGCTCTCGCCGCCCAAGCCTCCACCGTCTCGCAGCGACTTTTGCTCGATTTGGCCGCCGAGACGGCCAAGTACGTCTTCCCCAAGCAGTTCGAGGCTCGGACTCTCGAGGAAGCTCTCATGTCAGTTCCGGACCTGGAAACGGTGAAGTTCAAAGTGTTGAGTAGGAGAGACCAGTATGAGATTAGAGAAGTTGAGCCTTACTTTATAGCAGAGGTGACAATGCCTGGAAAGAGTGGTTTTGATTTTAATGGTGCTTCGCAATCGTTCAATGTCTTAGCTGAATACCTGTTTGGTAAGAATACCACAAGGGAGAAAATGGAGATGACCACACCGGTTTTTACACGTAAAGCTCAATCTGATGGAGAGAAAATGGAAATGACAACTCCAGTGATAACAAAGAGGGTGGAAAATGAAGATAAGTGGCAGATGTCCTTTGTCATGCCCTCAAAATACGGTGCCAATTTGCCATTGCCTAAAGATCCATCTGTAAAGGTCAAAGAGGTTCCAAAGAAATTAGTTGCAGTTGTTGCCTTTTCTGGTCAGTCCTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

240

Amino Acids

26.73

Weight (kDa)

9.38

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SOUL	PF04832	101 - 171	4.7e-16	SOUL heme-binding protein
SOUL	PF04832	172 - 237	4.5e-16	SOUL heme-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10130
fragaria_vesca	FvH4_6g18800 FvH4_6g18800
malus_domestica	MD12G1036600.v1.1
prunus_persica	Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1 Prupe.7G109600_v2.0.a1
pyrus_communis	pycom12g02410
rosa_chinensis	RchiOBHm_Chr2g0159491 RchiOBHm_Chr3g0473811
rosa_laevigata	RLG00000008901 RLG00000023982
rosa_multiflora	Rmu_sc0007035.1_g000004
rosa_roxburghii	Rroxscaffold_3G00219750 Rroxscaffold_6G00407780 Rroxscaffold_7G00191120
rosa_rugosa	Rorug03G0135700
rosa_samantha	Rh3AG186200 Rh3BG214600 Rh3CG211300 Rh3DG210500 Rh5CG491700
rosa_wichuraiana	Rw3G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	623
AccBSI	CCGCTC	2 cut(s)	140, 170
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	1 cut(s)	641
AcoI	YGGCCR	3 cut(s)	84, 219, 231
AfaI	GTAC	2 cut(s)	34, 239
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	509
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	319, 436
AjnI	CCWGG	2 cut(s)	300, 391
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 441, 473
AluBI	AGCT	4 cut(s)	17, 281, 446, 518
AluI	AGCT	4 cut(s)	17, 281, 446, 518
Alw26I	GTCTC	3 cut(s)	199, 221, 330
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	3 cut(s)	84, 219, 231
ApeKI	GCWGC	3 cut(s)	101, 118, 199
AsiGI	ACCGGT	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	129, 298
AsuHPI	GGTGA	4 cut(s)	19, 58, 322, 394
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	129, 298
BanI	GGYRCC	1 cut(s)	623
BbsI	GAAGAC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	113, 130, 211
BccI	CCATC	2 cut(s)	521, 658
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	302, 393
BcoDI	GTCTC	3 cut(s)	199, 221, 330
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	9 cut(s)	87, 99, 102, 116, 119, 168, 177, 200, 222
BlsI	GCNGC	9 cut(s)	88, 100, 103, 117, 120, 169, 178, 201, 223
Bme1390I	CCNGG	2 cut(s)	302, 393
Bme18I	GGWCC	2 cut(s)	129, 298
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	129, 298
BmiI	GGNNCC	2 cut(s)	625, 672
BmrFI	CCNGG	2 cut(s)	302, 393
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	537
BsaAI	YACGTR	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	295, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	340, 554
Bse3DI	GCAATG	1 cut(s)	635
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	2 cut(s)	302, 393
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	635
BseNI	ACTGG	2 cut(s)	340, 554
BseXI	GCAGC	3 cut(s)	113, 130, 211
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	86, 221, 233
BshNI	GGYRCC	1 cut(s)	623
BshTI	ACCGGT	1 cut(s)	499
BsiEI	CGRYCG	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	296, 500
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	3 cut(s)	199, 221, 330
BsmBI	CGTCTC	2 cut(s)	199, 221
BsnI	GGCC	3 cut(s)	86, 221, 233
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	272
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	646
Bsp19I	CCATGG	1 cut(s)	81
BspANI	GGCC	3 cut(s)	86, 221, 233
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	625, 672
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	330
BsrBI	CCGCTC	2 cut(s)	140, 170
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	340, 554
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	646
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	302, 393
Bst4CI	ACNGT	3 cut(s)	193, 310, 623
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	512
BstDEI	CTNAG	1 cut(s)	442
BstDSI	CCRYGG	1 cut(s)	81
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	649
BstMAI	GTCTC	3 cut(s)	199, 221, 330
BstMBI	GATC	1 cut(s)	646
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	8 cut(s)	95, 146, 173, 176, 182, 208, 230, 695
BstNI	CCWGG	2 cut(s)	302, 393
BstSCI	CCNGG	2 cut(s)	300, 391
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	113, 130, 211
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	86, 221, 233
BtgI	CCRYGG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	561
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	129, 298
Csp6I	GTAC	2 cut(s)	33, 238
CspAI	ACCGGT	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	4 cut(s)	82, 133, 286, 607
CviQI	GTAC	2 cut(s)	33, 238
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
EaeI	YGGCCR	3 cut(s)	84, 219, 231
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	129, 298
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	300, 391
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	2 cut(s)	199, 221
FaeI	CATG	4 cut(s)	85, 136, 289, 610
FaiI	YATR	6 cut(s)	83, 134, 287, 345, 374, 608
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	4 cut(s)	81, 132, 285, 606
Fnu4HI	GCNGC	9 cut(s)	87, 99, 102, 116, 119, 168, 177, 200, 222
Fsp4HI	GCNGC	9 cut(s)	87, 99, 102, 116, 119, 168, 177, 200, 222
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	9 cut(s)	87, 99, 102, 116, 119, 168, 177, 200, 222
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	86, 221, 233
HapII	CCGG	2 cut(s)	296, 500
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	85, 136, 289, 610
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	3 cut(s)	63, 153, 268
HpaII	CCGG	2 cut(s)	296, 500
HphI	GGTGA	4 cut(s)	19, 58, 322, 394
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	267, 526
Hpy188III	TCNNGA	3 cut(s)	143, 272, 296
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	117, 120
HpyCH4III	ACNGT	3 cut(s)	193, 310, 623
HpyCH4IV	ACGT	2 cut(s)	240, 511
HpyCH4V	TGCA	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	8 cut(s)	95, 146, 173, 176, 182, 208, 230, 695
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	2 cut(s)	240, 511
Hsp92II	CATG	4 cut(s)	85, 136, 289, 610
HspAI	GCGC	1 cut(s)	96
Kpn2I	TCCGGA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	646
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	3 cut(s)	113, 130, 211
MaeII	ACGT	2 cut(s)	240, 511
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	1 cut(s)	648
MbiI	CCGCTC	2 cut(s)	140, 170
MboI	GATC	1 cut(s)	646
MboII	GAAGA	3 cut(s)	135, 235, 593
MflI	RGATCY	1 cut(s)	646
MluCI	AATT	2 cut(s)	628, 680
MlyI	GAGTC	2 cut(s)	57, 262
MroI	TCCGGA	1 cut(s)	295
MseI	TTAA	2 cut(s)	414, 721
MspI	CCGG	2 cut(s)	296, 500
MspR9I	CCNGG	2 cut(s)	302, 393
MvaI	CCWGG	2 cut(s)	302, 393
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	8 cut(s)	95, 146, 173, 176, 182, 208, 230, 695
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	646
NlaIII	CATG	4 cut(s)	85, 136, 289, 610
NlaIV	GGNNCC	2 cut(s)	625, 672
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	9 cut(s)	88, 100, 103, 117, 120, 169, 178, 201, 223
PleI	GAGTC	2 cut(s)	57, 262
PpsI	GAGTC	2 cut(s)	57, 262
Ppu21I	YACGTR	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	300, 391
PspGI	CCWGG	2 cut(s)	300, 391
PspN4I	GGNNCC	2 cut(s)	625, 672
PspPI	GGNCC	2 cut(s)	129, 298
PsuI	RGATCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	34, 239
RsaNI	GTAC	2 cut(s)	33, 238
SaqAI	TTAA	2 cut(s)	414, 721
SatI	GCNGC	9 cut(s)	87, 99, 102, 116, 119, 168, 177, 200, 222
Sau3AI	GATC	1 cut(s)	646
Sau96I	GGNCC	2 cut(s)	129, 298
SchI	GAGTC	2 cut(s)	57, 262
ScrFI	CCNGG	2 cut(s)	302, 393
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	129, 298
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	628, 680
StyD4I	CCNGG	2 cut(s)	300, 391
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	193, 310, 623
TaiI	ACGT	2 cut(s)	243, 514
TaqI	TCGA	4 cut(s)	144, 213, 258, 273
TasI	AATT	2 cut(s)	628, 680
TatI	WGTACW	1 cut(s)	32
TauI	GCSGC	6 cut(s)	89, 101, 118, 170, 179, 224
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	414, 721
Tru9I	TTAA	2 cut(s)	414, 721
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	3 cut(s)	101, 118, 199
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	561
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	129, 298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.