RLG00000008901

Heme-binding-like protein At3g10130

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
42272889 .. 42273642
754 bp
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UTR
Exon/CDS
Intron
RLM00000008901

Sequence Viewer

Length: 393 bp
ATGCCTTTCCGATTCAGAATTTTCTCCGAACTATGCCATGAGGATTTCATCGTCACTGTTTCTATCAACTTGGAAGAGCAGCTGATGGATTTGTCAACACGGTCATTCAAACAGTATGGGTTACCGAGCCGAGGAGGGGCAACGATGCCGGGAAAGACTGGTTTTAATTTCAATGGTGCTTCACAATCGTTCAATGTCTTAGTTGAATACGGTAAGAATACCACAAAGGAGAAAATGGAGATGACCACACCGGTTTTTATGCGTAAAACTCAATCTGATGGAGAGAAAATGGAAATGACAACTCCAATGATAACAAACACTTGTAAAGGCATAGACTATATTGCCAACCTTTGCCCTGAGAAAGCTGAATGGGATAAACACAAGGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.85

Weight (kDa)

6.73

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 385
AfiI CCNNNNNNNGG 2 cut(s) 131, 136
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 4 cut(s) 109, 172, 193, 206
AluBI AGCT 2 cut(s) 82, 365
AluI AGCT 2 cut(s) 82, 365
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 150
BbvI GCAGC 1 cut(s) 91
BccI CCATC 2 cut(s) 79, 272
BcnI CCSGG 1 cut(s) 150
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 136
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 131, 136
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 250
BsiSI CCGG 2 cut(s) 149, 251
BslI CCNNNNNNNGG 2 cut(s) 131, 136
BspCNI CTCAG 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 130
Bst4CI ACNGT 4 cut(s) 58, 102, 114, 212
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 199, 357
BstEII GGTNACC 1 cut(s) 120
BstPI GGTNACC 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 250
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 1 cut(s) 38
CviJI RGCY 3 cut(s) 82, 129, 365
CviKI_1 RGCY 3 cut(s) 82, 129, 365
DdeI CTNAG 2 cut(s) 199, 357
DraIII CACNNNGTG 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco91I GGTNACC 1 cut(s) 120
EcoO65I GGTNACC 1 cut(s) 120
FaeI CATG 1 cut(s) 41
FaiI YATR 7 cut(s) 34, 39, 117, 260, 332, 339, 391
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HapII CCGG 2 cut(s) 149, 251
Hin1II CATG 1 cut(s) 41
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 12
HpaII CCGG 2 cut(s) 149, 251
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 4 cut(s) 11, 17, 28, 277
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4III ACNGT 4 cut(s) 58, 102, 114, 212
HpyF3I CTNAG 2 cut(s) 199, 357
Hsp92II CATG 1 cut(s) 41
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 144, 162, 264, 369
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 52, 120
MboII GAAGA 1 cut(s) 86
MluCI AATT 2 cut(s) 18, 166
MnlI CCTC 3 cut(s) 34, 125, 128
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 2 cut(s) 149, 251
MspR9I CCNGG 1 cut(s) 150
NciI CCSGG 1 cut(s) 150
NlaIII CATG 1 cut(s) 41
NmeAIII GCCGAG 1 cut(s) 155
NmuCI GTSAC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 12
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 120
PvuII CAGCTG 1 cut(s) 82
SapI GCTCTTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 150
SetI ASST 4 cut(s) 84, 351, 367, 387
SfaNI GCATC 1 cut(s) 135
Sse9I AATT 2 cut(s) 18, 166
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 58, 102, 114, 212
TasI AATT 2 cut(s) 18, 166
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 1 cut(s) 61
XapI RAATTY 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.