Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Forward (+)

3134873 .. 3137417

Gene Structure 2545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGTCGACTCTCATGGGCCAGTCCGATTCAGAGATTCCGTTTCTTCTCTTACTTATCTCAGCTGAATGGAAGAAGAAGCGTTTTGGCTTGCTCTGGCTATGAAAATCGTTATCTTTCGTCTTTAGTTGAAGCTTCAGATTGTGAACTTGATGAAGTTCCAGATGATAGAAAAGTAGCGGAGAAAGACACTGCTCTACATTTAGCATTGTCACAGCTTTCAGGTGATTTTGATAAAGACTCTAAGTTGTCATTGCAGCGGTTTTACAGAAAAAGGAGAGTTTCTGTGATATCCACGGGTTCCCTCAACCTTGATCTAGCTCTTGGAGTTGGAGGATTGCCAAAGGGAAGAATGGTTGAGGTTTACGGAAAAGAAGCATCTGGAAAGACAACTCTAGCTCTGCATATCATCAAGGAAGCTCAAAAGCTTGGAGGTTATTGCGCTTATCTTGATGCAGAGAATGCCATGGATCCTTCTCTAGCAGAATCAATAGGTGTGAACACAGAAGAGCTTCTGATATCACGACCTAGTTCTGCTGAAAAGATGCTAAATATTGTTGATGTGCTGACCAAGAGTGGGTCAGTAGACGTAATTGTGGTAGACAGTGTTGCTGCTCTTGCCCCTCAATGTGAACTTGATGCTCCTGTAGGAGAAAGATACAGAGACACACAATCAAGAATAATGACACAGGCGCTCAGAAAAATCCATTACTCAGTTGGCTATTCTCAGACACTGATCGTTTTTCTTAATCAGGTCAGATCACATGTGAAATCTAACATGCATTTCCCGCACGCCGAAGAAGTGACTTGTGGAGGAAACGCATTACCGTTTCATGCAGCTATACGTCTCAAAATGATAAGAACCGGGCTAATAAAGACTGCCAATAAGATAAGTGGTCTCAATGTCTGCGTCCAAGTGGTGAAGAATAAACTGGCGCCCGGAAAGAAGAAATCTGAATTGGGGATTCACTTTGGTCATGGTTTCTACGTGGAGCGAGAGGTATTAGAATTGGCTTGTGAGCATGGAGTTATCTTAAGAGAAGGAACTAGCTATTTCATTGAAGGCGAGGTCATTGAAGGGAAAGACGCAGCTGAGAAGTATCTGGTGGAAAATAAAGAGGCTCTCGATACTGTCGTTGCAATCCTGAGGAACCAGCTCTTCAAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

389

Amino Acids

42.95

Weight (kDa)

8.06

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	65 - 328	1.6e-84	RecA N-terminal domain
Rad51	PF08423	91 - 287	8.4e-10	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	934
AccI	GTMKAC	3 cut(s)	7, 585, 600
AciI	CCGC	3 cut(s)	179, 259, 788
AclWI	GGATC	2 cut(s)	464, 477
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	935
AfiI	CCNNNNNNNGG	1 cut(s)	576
AflII	CTTAAG	1 cut(s)	1033
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	4 cut(s)	131, 1061, 1076, 1162
AjuI	GAANNNNNNNTTGG	2 cut(s)	941, 973
Alw26I	GTCTC	3 cut(s)	657, 851, 902
AlwI	GGATC	2 cut(s)	464, 477
AlwNI	CAGNNNCTG	1 cut(s)	733
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	4 cut(s)	256, 611, 836, 1088
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	3 cut(s)	443, 694, 937
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	2 cut(s)	865, 939
AsuHPI	GGTGA	2 cut(s)	236, 931
AxyI	CCTNAGG	1 cut(s)	1145
BaeI	ACNNNNGTAYC	2 cut(s)	1119, 1152
BamHI	GGATCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	934
BbvI	GCAGC	4 cut(s)	268, 598, 848, 1100
BcnI	CCSGG	2 cut(s)	865, 939
BcoDI	GTCTC	3 cut(s)	657, 851, 902
BfaI	CTAG	5 cut(s)	317, 395, 479, 528, 1047
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	2 cut(s)	695, 938
BfrI	CTTAAG	1 cut(s)	1033
BisI	GCNGC	4 cut(s)	257, 612, 837, 1089
BlsI	GCNGC	4 cut(s)	258, 613, 838, 1090
Bme1390I	CCNGG	2 cut(s)	865, 939
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	4 cut(s)	301, 471, 936, 1151
BmrFI	CCNGG	2 cut(s)	865, 939
BmsI	GCATC	4 cut(s)	386, 442, 534, 628
BpuMI	CCSGG	2 cut(s)	865, 939
BsaAI	YACGTR	1 cut(s)	988
BsaHI	GRCGYC	1 cut(s)	935
BsaI	GGTCTC	1 cut(s)	902
BsaJI	CCNNGG	2 cut(s)	294, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	21, 936
Bse21I	CCTNAGG	1 cut(s)	1145
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	294, 465
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	6 cut(s)	74, 709, 726, 740, 1083, 1136
BseNI	ACTGG	2 cut(s)	21, 936
BseXI	GCAGC	4 cut(s)	268, 598, 848, 1100
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	934
BsiSI	CCGG	2 cut(s)	864, 939
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	3 cut(s)	657, 851, 902
BsmBI	CGTCTC	1 cut(s)	851
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	902
Bsp143I	GATC	4 cut(s)	313, 469, 735, 758
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	3 cut(s)	179, 259, 788
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	6 cut(s)	73, 708, 725, 739, 1084, 1137
BspLI	GGNNCC	4 cut(s)	301, 471, 936, 1151
BspPI	GGATC	2 cut(s)	464, 477
BspQI	GCTCTTC	2 cut(s)	501, 1163
BspT107I	GGYRCC	1 cut(s)	934
BspTI	CTTAAG	1 cut(s)	1033
BspTNI	GGTCTC	1 cut(s)	902
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	21, 936
BssECI	CCNNGG	2 cut(s)	294, 465
BssMI	GATC	4 cut(s)	313, 469, 735, 758
BssNI	GRCGYC	1 cut(s)	935
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	605, 828, 1132
Bst6I	CTCTTC	2 cut(s)	501, 1163
BstACI	GRCGYC	1 cut(s)	935
BstAFI	CTTAAG	1 cut(s)	1033
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	988
BstC8I	GCNNGC	2 cut(s)	91, 792
BstDEI	CTNAG	7 cut(s)	60, 243, 695, 712, 726, 1092, 1145
BstDSI	CCRYGG	2 cut(s)	294, 465
BstH2I	RGCGCY	2 cut(s)	695, 938
BstHHI	GCGC	3 cut(s)	443, 694, 937
BstKTI	GATC	4 cut(s)	316, 472, 738, 761
BstMAI	GTCTC	3 cut(s)	657, 851, 902
BstMBI	GATC	4 cut(s)	313, 469, 735, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	461, 617, 787
BstNSI	RCATGY	2 cut(s)	767, 781
BstSCI	CCNGG	2 cut(s)	863, 937
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	268, 598, 848, 1100
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
Bsu36I	CCTNAGG	1 cut(s)	1145
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	294, 465
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 610, 731
Cac8I	GCNNGC	2 cut(s)	91, 792
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	3 cut(s)	443, 694, 937
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	2 cut(s)	898, 1094
CviAII	CATG	7 cut(s)	15, 466, 764, 778, 833, 977, 1022
DdeI	CTNAG	7 cut(s)	60, 243, 695, 712, 726, 1092, 1145
DinI	GGCGCC	1 cut(s)	936
DpnI	GATC	4 cut(s)	315, 471, 737, 760
DpnII	GATC	4 cut(s)	313, 469, 735, 758
Eam1104I	CTCTTC	2 cut(s)	501, 1163
EarI	CTCTTC	2 cut(s)	501, 1163
Eco130I	CCWWGG	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	902
Eco32I	GATATC	2 cut(s)	291, 519
Eco57I	CTGAAG	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	1145
EcoRV	GATATC	2 cut(s)	291, 519
EcoT14I	CCWWGG	1 cut(s)	465
EcoT22I	ATGCAT	1 cut(s)	783
EgeI	GGCGCC	1 cut(s)	936
EheI	GGCGCC	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	851
FaeI	CATG	7 cut(s)	18, 469, 767, 781, 836, 980, 1025
FatI	CATG	7 cut(s)	14, 465, 763, 777, 832, 976, 1021
FauI	CCCGC	1 cut(s)	795
FblI	GTMKAC	3 cut(s)	7, 585, 600
Fnu4HI	GCNGC	4 cut(s)	257, 612, 837, 1089
Fsp4HI	GCNGC	4 cut(s)	257, 612, 837, 1089
FspBI	CTAG	5 cut(s)	317, 395, 479, 528, 1047
GlaI	GCGC	3 cut(s)	442, 693, 936
GluI	GCNGC	4 cut(s)	257, 612, 837, 1089
HaeII	RGCGCY	2 cut(s)	695, 938
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	864, 939
HgaI	GACGC	2 cut(s)	898, 1094
HhaI	GCGC	3 cut(s)	443, 694, 937
Hin1I	GRCGYC	1 cut(s)	935
Hin1II	CATG	7 cut(s)	18, 469, 767, 781, 836, 980, 1025
Hin6I	GCGC	3 cut(s)	441, 692, 935
HinP1I	GCGC	3 cut(s)	441, 692, 935
HincII	GTYRAC	1 cut(s)	8
HindII	GTYRAC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	132, 425
HinfI	GANTC	6 cut(s)	9, 28, 36, 239, 485, 964
HpaII	CCGG	2 cut(s)	864, 939
HphI	GGTGA	2 cut(s)	236, 931
Hpy166II	GTNNAC	7 cut(s)	8, 146, 364, 499, 586, 601, 632
Hpy188I	TCNGA	8 cut(s)	27, 33, 139, 516, 698, 729, 758, 955
Hpy188III	TCNNGA	8 cut(s)	161, 381, 449, 522, 675, 1124, 1144, 1162
Hpy8I	GTNNAC	7 cut(s)	8, 146, 364, 499, 586, 601, 632
HpyAV	CCTTC	4 cut(s)	483, 1034, 1055, 1070
HpyCH4III	ACNGT	3 cut(s)	605, 828, 1132
HpyCH4IV	ACGT	3 cut(s)	588, 844, 987
HpyCH4V	TGCA	6 cut(s)	256, 403, 455, 781, 836, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	461, 617, 787
HpyF3I	CTNAG	7 cut(s)	60, 243, 695, 712, 726, 1092, 1145
HpySE526I	ACGT	3 cut(s)	588, 844, 987
Hsp92I	GRCGYC	1 cut(s)	935
Hsp92II	CATG	7 cut(s)	18, 469, 767, 781, 836, 980, 1025
HspAI	GCGC	3 cut(s)	441, 692, 935
KasI	GGCGCC	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	313, 469, 735, 758
LguI	GCTCTTC	2 cut(s)	501, 1163
LmnI	GCTCC	2 cut(s)	646, 991
Lsp1109I	GCAGC	4 cut(s)	268, 598, 848, 1100
LweI	GCATC	4 cut(s)	386, 442, 534, 628
MaeI	CTAG	5 cut(s)	317, 395, 479, 528, 1047
MaeII	ACGT	3 cut(s)	588, 844, 987
MaeIII	GTNAC	2 cut(s)	210, 802
MalI	GATC	4 cut(s)	315, 471, 737, 760
MboI	GATC	4 cut(s)	313, 469, 735, 758
MboII	GAAGA	9 cut(s)	37, 84, 87, 360, 518, 809, 934, 958, 1150
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	3 cut(s)	591, 956, 1007
Mly113I	GGCGCC	1 cut(s)	935
MlyI	GAGTC	2 cut(s)	3, 233
MmeI	TCCRAC	1 cut(s)	310
Mph1103I	ATGCAT	1 cut(s)	783
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	2 cut(s)	747, 1034
MspA1I	CMGCKG	3 cut(s)	64, 259, 1091
MspCI	CTTAAG	1 cut(s)	1033
MspI	CCGG	2 cut(s)	864, 939
MspR9I	CCNGG	2 cut(s)	865, 939
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	3 cut(s)	461, 617, 787
NarI	GGCGCC	1 cut(s)	935
NciI	CCSGG	2 cut(s)	865, 939
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	4 cut(s)	313, 469, 735, 758
NlaIII	CATG	7 cut(s)	18, 469, 767, 781, 836, 980, 1025
NlaIV	GGNNCC	4 cut(s)	301, 471, 936, 1151
NmuCI	GTSAC	2 cut(s)	210, 802
NsiI	ATGCAT	1 cut(s)	783
NspI	RCATGY	2 cut(s)	767, 781
PciI	ACATGT	1 cut(s)	763
PciSI	GCTCTTC	2 cut(s)	501, 1163
PcsI	WCGNNNNNNNCGW	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	4 cut(s)	28, 36, 485, 964
PkrI	GCNGC	4 cut(s)	258, 613, 838, 1090
PleI	GAGTC	2 cut(s)	3, 233
PluTI	GGCGCC	1 cut(s)	938
PpsI	GAGTC	2 cut(s)	3, 233
Ppu21I	YACGTR	1 cut(s)	988
PscI	ACATGT	1 cut(s)	763
PspN4I	GGNNCC	4 cut(s)	301, 471, 936, 1151
PspPI	GGNCC	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	1 cut(s)	469
PvuII	CAGCTG	2 cut(s)	64, 1091
SalI	GTCGAC	1 cut(s)	6
SapI	GCTCTTC	2 cut(s)	501, 1163
SaqAI	TTAA	2 cut(s)	747, 1034
SatI	GCNGC	4 cut(s)	257, 612, 837, 1089
Sau3AI	GATC	4 cut(s)	313, 469, 735, 758
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	3, 233
ScrFI	CCNGG	2 cut(s)	865, 939
SfaNI	GCATC	4 cut(s)	386, 442, 534, 628
SfcI	CTRYAG	1 cut(s)	645
SfoI	GGCGCC	1 cut(s)	936
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
Sse9I	AATT	3 cut(s)	591, 956, 1007
SsiI	CCGC	3 cut(s)	179, 259, 788
SspDI	GGCGCC	1 cut(s)	934
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	5 cut(s)	317, 395, 479, 528, 1047
StyD4I	CCNGG	2 cut(s)	863, 937
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	605, 828, 1132
TaiI	ACGT	3 cut(s)	591, 847, 990
TaqI	TCGA	2 cut(s)	7, 1125
TasI	AATT	3 cut(s)	591, 956, 1007
TfiI	GAWTC	4 cut(s)	28, 36, 485, 964
Tru1I	TTAA	2 cut(s)	747, 1034
Tru9I	TTAA	2 cut(s)	747, 1034
TscAI	CASTG	3 cut(s)	196, 610, 738
TseFI	GTSAC	2 cut(s)	210, 802
TseI	GCWGC	4 cut(s)	256, 611, 836, 1088
Tsp45I	GTSAC	2 cut(s)	210, 802
TspDTI	ATGAA	4 cut(s)	117, 168, 821, 1045
TspGWI	ACGGA	2 cut(s)	29, 381
TspRI	CASTG	3 cut(s)	196, 610, 738
Vha464I	CTTAAG	1 cut(s)	1033
XceI	RCATGY	2 cut(s)	767, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XmiI	GTMKAC	3 cut(s)	7, 585, 600
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	5 cut(s)	317, 395, 479, 528, 1047
Zsp2I	ATGCAT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.