Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020880.1

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

23063 .. 25337

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020880.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ctggattatgatgataatggcgatgctaaagcaagagagaaagatgttgcactgcatttgcctctcccacggctttctggcgatttcgagcacgaatctatgttgtccttgccgtggttttttcactcaaggcgtgcacctgttatctccactggttccttgaagcttgatatagctttcgggactggaggattaccaaagggaagaattgttgagatttatgggcaggaagcatttggcaggactacgctcgcccttcacatcatcaaggaagcccaaaagcttggagtagctttcgtgacctcgcaggaggttgccagaattctcatcagagtagcttttggtgttagtgacagtagattttgtggtcgccggagtttgccgaaagctggccagagactcgcaggaagttggccggagacccgccagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

144

Amino Acids

15.88

Weight (kDa)

9.51

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	424
AcoI	YGGCCR	2 cut(s)	391, 413
AcsI	RAATTY	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	114, 389
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	6 cut(s)	166, 176, 283, 293, 338, 389
AluI	AGCT	6 cut(s)	166, 176, 283, 293, 338, 389
Alw21I	GWGCWC	2 cut(s)	93, 139
Alw26I	GTCTC	2 cut(s)	391, 413
Alw44I	GTGCAC	1 cut(s)	135
AoxI	GGCC	2 cut(s)	391, 413
ApaLI	GTGCAC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	393
Bbv12I	GWGCWC	2 cut(s)	93, 139
BceAI	ACGGC	2 cut(s)	86, 97
BcoDI	GTCTC	2 cut(s)	391, 413
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	68, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 389
Bse1I	ACTGG	2 cut(s)	157, 190
BseDI	CCNNGG	2 cut(s)	68, 113
BseLI	CCNNNNNNNGG	2 cut(s)	114, 389
BseNI	ACTGG	2 cut(s)	157, 190
BseSI	GKGCMC	1 cut(s)	139
BshFI	GGCC	2 cut(s)	393, 415
BsiHKAI	GWGCWC	2 cut(s)	93, 139
BsiSI	CCGG	2 cut(s)	373, 416
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	114, 389
BsmAI	GTCTC	2 cut(s)	391, 413
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	393, 415
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	93, 139
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	393, 415
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	157, 190
BssECI	CCNNGG	2 cut(s)	68, 113
Bst4CI	ACNGT	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	135, 252, 391
BstDSI	CCRYGG	2 cut(s)	68, 113
BstMAI	GTCTC	2 cut(s)	391, 413
BstSLI	GKGCMC	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	393, 415
BtgI	CCRYGG	2 cut(s)	68, 113
BtgZI	GCGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	50, 150
Cac8I	GCNNGC	3 cut(s)	135, 252, 391
EaeI	YGGCCR	2 cut(s)	391, 413
Eco31I	GGTCTC	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	321
FaiI	YATR	4 cut(s)	9, 101, 173, 222
FaqI	GGGAC	1 cut(s)	196
FauI	CCCGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	393, 415
HapII	CCGG	2 cut(s)	373, 416
HindIII	AAGCTT	2 cut(s)	164, 281
HinfI	GANTC	2 cut(s)	95, 399
HpaII	CCGG	2 cut(s)	373, 416
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	2 cut(s)	181, 298
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	266
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	3 cut(s)	50, 55, 137
LweI	GCATC	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	298, 350
MboII	GAAGA	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	93, 139
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	207, 321
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	4 cut(s)	72, 182, 304, 313
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	2 cut(s)	373, 416
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	2 cut(s)	298, 350
PfeI	GAWTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	393
SduI	GDGCHC	2 cut(s)	93, 139
SetI	ASST	9 cut(s)	142, 168, 178, 285, 295, 305, 315, 340, 391
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	207, 321
SsiI	CCGC	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	207, 321
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	2 cut(s)	57, 157
TseFI	GTSAC	2 cut(s)	298, 350
Tsp45I	GTSAC	2 cut(s)	298, 350
TspRI	CASTG	2 cut(s)	57, 157
VneI	GTGCAC	1 cut(s)	135
XapI	RAATTY	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.