FvH4_6g24630

Belongs to the RecA family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
18688429 .. 18693942
5514 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24630.t1

Sequence Viewer

Length: 1194 bp
ATGGGGTTACTTCCACACCGTTTTGGTCTGGCGGCGCTCAACCAACCTCGCCTCTCTTCTTTACTCTCCTCCTTCCACCATGTCTCTCTCTCACAGAGAGGAGGAAGAAGAAGACACACAACGACGACTTGTCCTGCTGAATGTGGTGCGCTGGATTATAATGGCGATAATGAGGAAGATGCTAAAGCAAGAGAGAAAGATGCTGCCCTGCATTCGGCTCTCTCACGCCTTTCGGGCGATTTCGGGCACGAATCCATGTTATCATTGCCGCGGTTTTTTCGCCCCAGGCGTGCTCCTGTTATCTCCACTGGTTCCTTGAAGCTTGATCTGGCCCTCGGGACCGGAGGGTTGCCCAAGGGAAGAATTGTTGAAATTTATGGGCAGGAAGCATCTGGCAAGACTACGCTCGCACTCCACATTGTCAAGGAAGCTCAGAAGCTTGGAGGGTATTGCGCATATCTGGATGTAGAGAATGCAGTGGACCCTGCACTTGCACAATCAATGGGTGTAAACACAGAAAACCTTCTTATTTCTTATCCCAATTCTGCTGAAAATGTGCTGAATGTGGTCGACACTTTGGCTAAAAGCGGTTCCTTGGATGTAATTGTTGTGGATAGTGTAGCTGCTCTGGTCCCCCAGTGTGAGCTTGATGTTGCAATTGGTAGTGCATACCCAAACACTCAGTCAAGAATAATGACCCAAGCACTTAGGAAAATTCATTCCTCATTAAGCCATTCTCAAGCACTTGTTGTTTTTATAAATCAGGTTAGATCCAGTCCAAACTCAGGGCAGGGTTTTGGACCCGTGGATGAGGTCACCTGTGGTGGAAATGCCTTGCGATTCTATGCAGCAGTTCGATTAAGAATAAAAAGAACCCAGTTGCTTAAGACTGAGGATAAGATCACAGGTCTTGGGATTTCTGTGCAAGTGGTGAAAAATAAATTGGCACCTGCAATGAAGAAAGCTGATCTGGGGATACAATTTGGTAGAGGGTTATGCTGTGAATCTGAGGTTTTGCAATTGGCTTGTGAACATGGGATCATTGCAAAAGAAGGAAACAACTACCACATAGGAAGACATGTTTTTAGTAATGAACATTCAGCGGAACAGTATCTGGCTAAAAATGATGTGATTTTGAGTAAGATGGTTAGGATCTTGAGGCATAATATATTCGAAGAAGATCTGCACAGTTAG

Protein Analysis

398

Amino Acids

43.01

Weight (kDa)

8.55

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RecA_N PF00154 69 - 332 2.4e-87 RecA N-terminal domain
Rad51 PF08423 101 - 293 2.5e-10 Rad51
ATPase PF06745 102 - 174 2.8e-06 KaiC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 159, 758
AarI CACCTGC 1 cut(s) 958
Acc16I TGCGCA 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 958
AccB1I GGYRCC 1 cut(s) 946
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 271
AciI CCGC 5 cut(s) 32, 269, 271, 588, 1103
AclWI GGATC 3 cut(s) 765, 1046, 1160
AcsI RAATTY 2 cut(s) 372, 714
AfiI CCNNNNNNNGG 2 cut(s) 214, 785
AflII CTTAAG 1 cut(s) 884
AflIII ACRYGT 1 cut(s) 1078
AgsI TTSAA 2 cut(s) 319, 371
AhdI GACNNNNNGTC 1 cut(s) 129
AjnI CCWGG 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 926, 958
AluBI AGCT 6 cut(s) 322, 431, 439, 623, 646, 965
AluI AGCT 6 cut(s) 322, 431, 439, 623, 646, 965
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 3 cut(s) 765, 1046, 1160
AlwNI CAGNNNCTG 1 cut(s) 1114
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 3 cut(s) 203, 623, 848
ApoI RAATTY 2 cut(s) 372, 714
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 3 cut(s) 37, 151, 455
AspS9I GGNCC 5 cut(s) 331, 339, 481, 631, 800
AsuHPI GGTGA 2 cut(s) 808, 943
AsuII TTCGAA 1 cut(s) 1173
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 4 cut(s) 339, 481, 631, 800
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 946
BbsI GAAGAC 2 cut(s) 118, 1081
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 190, 610, 860
BccI CCATC 1 cut(s) 1138
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 969
BcoDI GTCTC 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 38
BfrI CTTAAG 1 cut(s) 884
BfuAI ACCTGC 1 cut(s) 958
BfuI GTATCC 1 cut(s) 969
BglI GCCNNNNNGGC 1 cut(s) 234
BglII AGATCT 1 cut(s) 1180
BisI GCNGC 5 cut(s) 33, 204, 269, 624, 849
BlsI GCNGC 5 cut(s) 34, 205, 270, 625, 850
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 4 cut(s) 339, 481, 631, 800
BmeRI GACNNNNNGTC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 5 cut(s) 331, 339, 481, 631, 800
BmiI GGNNCC 7 cut(s) 313, 340, 483, 592, 633, 802, 948
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 2 cut(s) 631, 871
BmsI GCATC 3 cut(s) 169, 190, 398
BmuI ACTGGG 2 cut(s) 631, 871
BpiI GAAGAC 2 cut(s) 118, 1081
Bpu14I TTCGAA 1 cut(s) 1173
BpuEI CTTGAG 2 cut(s) 723, 1177
BsaJI CCNNGG 6 cut(s) 269, 284, 334, 354, 594, 804
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 785
Bse1I ACTGG 4 cut(s) 313, 637, 774, 877
Bse3DI GCAATG 3 cut(s) 263, 960, 1041
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 6 cut(s) 269, 284, 334, 354, 594, 804
BseGI GGATG 3 cut(s) 469, 604, 814
BseLI CCNNNNNNNGG 2 cut(s) 214, 785
BseMI GCAATG 3 cut(s) 263, 960, 1041
BseMII CTCAG 5 cut(s) 446, 695, 798, 882, 999
BseNI ACTGG 4 cut(s) 313, 637, 774, 877
BseRI GAGGAG 2 cut(s) 58, 114
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 3 cut(s) 190, 610, 860
BsgI GTGCAG 2 cut(s) 471, 1169
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 946
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 352, 617
BslI CCNNNNNNNGG 2 cut(s) 214, 785
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 2 cut(s) 352, 617
BsmI GAATGC 2 cut(s) 211, 478
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 335
Bsp119I TTCGAA 1 cut(s) 1173
Bsp1286I GDGCHC 2 cut(s) 249, 295
Bsp143I GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
BspACI CCGC 5 cut(s) 32, 269, 271, 588, 1103
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 5 cut(s) 445, 694, 797, 883, 1000
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 7 cut(s) 313, 340, 483, 592, 633, 802, 948
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 3 cut(s) 765, 1046, 1160
BspT104I TTCGAA 1 cut(s) 1173
BspT107I GGYRCC 1 cut(s) 946
BspTI CTTAAG 1 cut(s) 884
BsrDI GCAATG 3 cut(s) 263, 960, 1041
BsrI ACTGG 4 cut(s) 313, 637, 774, 877
BssECI CCNNGG 6 cut(s) 269, 284, 334, 354, 594, 804
BssMI GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
BssT1I CCWWGG 2 cut(s) 354, 594
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 20, 1110, 1190
Bst6I CTCTTC 1 cut(s) 61
BstAFI CTTAAG 1 cut(s) 884
BstBI TTCGAA 1 cut(s) 1173
BstC8I GCNNGC 2 cut(s) 291, 408
BstDEI CTNAG 6 cut(s) 432, 681, 707, 784, 891, 1008
BstDSI CCRYGG 2 cut(s) 269, 804
BstEII GGTNACC 1 cut(s) 814
BstF5I GGATG 3 cut(s) 469, 604, 814
BstFNI CGCG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 3 cut(s) 37, 151, 455
BstKTI GATC 7 cut(s) 328, 773, 903, 970, 1041, 1155, 1183
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 1082
BstPI GGTNACC 1 cut(s) 814
BstSCI CCNGG 1 cut(s) 284
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 3 cut(s) 190, 610, 860
BstV2I GAAGAC 2 cut(s) 118, 1081
BstX2I RGATCY 3 cut(s) 770, 1152, 1180
BstYI RGATCY 3 cut(s) 770, 1152, 1180
BsuI GTATCC 1 cut(s) 969
BsuRI GGCC 1 cut(s) 332
BtgI CCRYGG 2 cut(s) 269, 804
BtsCI GGATG 3 cut(s) 469, 604, 814
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 306, 483, 644
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 2 cut(s) 291, 408
CaiI CAGNNNCTG 1 cut(s) 1114
CfoI GCGC 3 cut(s) 37, 151, 455
Cfr13I GGNCC 5 cut(s) 331, 339, 481, 631, 800
Cfr42I CCGCGG 1 cut(s) 272
CviAII CATG 4 cut(s) 80, 256, 1034, 1079
DdeI CTNAG 6 cut(s) 432, 681, 707, 784, 891, 1008
DpnI GATC 7 cut(s) 327, 772, 902, 969, 1040, 1154, 1182
DpnII GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
DriI GACNNNNNGTC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 354, 594
Eco47I GGWCC 4 cut(s) 339, 481, 631, 800
Eco88I CYCGRG 1 cut(s) 335
Eco91I GGTNACC 1 cut(s) 814
EcoO65I GGTNACC 1 cut(s) 814
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 354, 594
ErhI CCWWGG 2 cut(s) 354, 594
FaeI CATG 4 cut(s) 83, 259, 1037, 1082
FaqI GGGAC 2 cut(s) 352, 617
FatI CATG 4 cut(s) 79, 255, 1033, 1078
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 5 cut(s) 33, 204, 269, 624, 849
FokI GGATG 3 cut(s) 476, 611, 821
Fsp4HI GCNGC 5 cut(s) 33, 204, 269, 624, 849
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 3 cut(s) 36, 150, 454
GluI GCNGC 5 cut(s) 33, 204, 269, 624, 849
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 342
HhaI GCGC 3 cut(s) 37, 151, 455
Hin1II CATG 4 cut(s) 83, 259, 1037, 1082
Hin6I GCGC 3 cut(s) 35, 149, 453
HinP1I GCGC 3 cut(s) 35, 149, 453
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 2 cut(s) 320, 437
HinfI GANTC 3 cut(s) 251, 840, 1004
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 808, 943
Hpy166II GTNNAC 4 cut(s) 481, 511, 571, 1031
Hpy188I TCNGA 2 cut(s) 435, 1009
Hpy188III TCNNGA 4 cut(s) 337, 461, 687, 1156
Hpy8I GTNNAC 4 cut(s) 481, 511, 571, 1031
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 82, 533, 1046
HpyCH4III ACNGT 3 cut(s) 20, 1110, 1190
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 6 cut(s) 432, 681, 707, 784, 891, 1008
Hsp92II CATG 4 cut(s) 83, 259, 1037, 1082
HspAI GCGC 3 cut(s) 35, 149, 453
KspI CCGCGG 1 cut(s) 272
Kzo9I GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 3 cut(s) 190, 610, 860
LweI GCATC 3 cut(s) 169, 190, 398
MaeIII GTNAC 2 cut(s) 6, 814
MalI GATC 7 cut(s) 327, 772, 902, 969, 1040, 1154, 1182
MboI GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
MfeI CAATTG 2 cut(s) 657, 1019
MflI RGATCY 3 cut(s) 770, 1152, 1180
MhlI GDGCHC 2 cut(s) 249, 295
MluCI AATT 9 cut(s) 363, 372, 541, 603, 657, 714, 941, 980, 1019
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 3 cut(s) 728, 860, 885
MspA1I CMGCKG 2 cut(s) 271, 1103
MspCI CTTAAG 1 cut(s) 884
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 2 cut(s) 657, 1019
Mva1269I GAATGC 2 cut(s) 211, 478
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
NlaIII CATG 4 cut(s) 83, 259, 1037, 1082
NlaIV GGNNCC 7 cut(s) 313, 340, 483, 592, 633, 802, 948
NmuCI GTSAC 1 cut(s) 814
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 1 cut(s) 1082
NspV TTCGAA 1 cut(s) 1173
PaqCI CACCTGC 1 cut(s) 958
PciI ACATGT 1 cut(s) 1078
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 2 cut(s) 211, 478
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 251, 840, 1004
PkrI GCNGC 5 cut(s) 34, 205, 270, 625, 850
PscI ACATGT 1 cut(s) 1078
PsiI TTATAA 2 cut(s) 159, 758
Psp6I CCWGG 1 cut(s) 284
PspEI GGTNACC 1 cut(s) 814
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 7 cut(s) 313, 340, 483, 592, 633, 802, 948
PspPI GGNCC 5 cut(s) 331, 339, 481, 631, 800
PstNI CAGNNNCTG 1 cut(s) 1114
PsuI RGATCY 3 cut(s) 770, 1152, 1180
SacII CCGCGG 1 cut(s) 272
SalI GTCGAC 1 cut(s) 569
SaqAI TTAA 3 cut(s) 728, 860, 885
SatI GCNGC 5 cut(s) 33, 204, 269, 624, 849
Sau3AI GATC 7 cut(s) 325, 770, 900, 967, 1038, 1152, 1180
Sau96I GGNCC 5 cut(s) 331, 339, 481, 631, 800
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 249, 295
SfaNI GCATC 3 cut(s) 169, 190, 398
Sfr303I CCGCGG 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 1173
SgrBI CCGCGG 1 cut(s) 272
SinI GGWCC 4 cut(s) 339, 481, 631, 800
SmlI CTYRAG 3 cut(s) 738, 884, 1156
SmoI CTYRAG 3 cut(s) 738, 884, 1156
Sse9I AATT 9 cut(s) 363, 372, 541, 603, 657, 714, 941, 980, 1019
SsiI CCGC 5 cut(s) 32, 269, 271, 588, 1103
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 354, 594
TaaI ACNGT 3 cut(s) 20, 1110, 1190
TaqI TCGA 3 cut(s) 570, 856, 1173
TasI AATT 9 cut(s) 363, 372, 541, 603, 657, 714, 941, 980, 1019
TauI GCSGC 2 cut(s) 35, 271
TfiI GAWTC 3 cut(s) 251, 840, 1004
Tru1I TTAA 3 cut(s) 728, 860, 885
Tru9I TTAA 3 cut(s) 728, 860, 885
TscAI CASTG 3 cut(s) 313, 483, 644
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 3 cut(s) 203, 623, 848
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 3 cut(s) 707, 971, 1107
TspRI CASTG 3 cut(s) 313, 483, 644
Vha464I CTTAAG 1 cut(s) 884
VpaK11BI GGWCC 4 cut(s) 339, 481, 631, 800
XapI RAATTY 2 cut(s) 372, 714
XceI RCATGY 1 cut(s) 1082
XmiI GTMKAC 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.