Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000295.1

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

216581 .. 219644

Gene Structure 3064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000295.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcatcgcagacgaagaacatctccgacgtcagaagctctccctcggcgcagcgaacctcagcgctggccggacgatctcgacggagagaagccttgttgtggatcggagcgaaacgagacgacatcgtttcaccacctactcctctttctccctcgttttctctgatcttgacaccgataagagaaaacgcgattacagctgaatgtgccacactggattatgatgataatggcgatgctaaagcaagagagaaagatgttgcactgcatttgcctctcccacggctttctggccatttcgagcacgaatctatgttgtccttgccgtggctttttcactcaaggcgttcacctgttatctccactggttccttgaagcttgatatagctttcgggactggaggattaccaaagggaagaattgttgagatttatgggcaggaagcatttggcaggacttcgctcgcccttcacatcatcaaggaagcccaaaagcttggagtaactttcgtgacctcgccggaggttgccagaaatctcatcagagtagcttttggtgttagtgacagtagattttgtgatcgccggagtttgccgaaagttggccagagactcgcaggaagttggccggagacccgccagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

216

Amino Acids

23.7

Weight (kDa)

9.93

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	4 cut(s)	69, 295, 607, 629
AcyI	GRCGYC	1 cut(s)	30
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	102, 330, 605
AgsI	TTSAA	1 cut(s)	379
AluBI	AGCT	6 cut(s)	39, 203, 382, 392, 499, 554
AluI	AGCT	6 cut(s)	39, 203, 382, 392, 499, 554
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	114, 607, 629
AlwI	GGATC	1 cut(s)	113
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	4 cut(s)	69, 295, 607, 629
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	52, 67
AsuHPI	GGTGA	2 cut(s)	126, 345
BalI	TGGCCA	2 cut(s)	297, 609
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	64
BceAI	ACGGC	2 cut(s)	302, 313
BcoDI	GTCTC	3 cut(s)	114, 607, 629
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	373
BmsI	GCATC	2 cut(s)	14, 229
BpmI	CTGGAG	1 cut(s)	423
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	45, 284, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 330, 605
Bse1I	ACTGG	3 cut(s)	222, 373, 406
BseDI	CCNNGG	3 cut(s)	45, 284, 329
BseLI	CCNNNNNNNGG	3 cut(s)	102, 330, 605
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	222, 373, 406
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	4 cut(s)	71, 297, 609, 631
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	72, 524, 589, 632
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	102, 330, 605
BsmAI	GTCTC	3 cut(s)	114, 607, 629
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	4 cut(s)	71, 297, 609, 631
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	77, 105, 168, 583
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	4 cut(s)	71, 297, 609, 631
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	222, 373, 406
BssECI	CCNNGG	3 cut(s)	45, 284, 329
BssMI	GATC	4 cut(s)	77, 105, 168, 583
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	572
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	69, 468
BstDEI	CTNAG	1 cut(s)	61
BstDSI	CCRYGG	2 cut(s)	284, 329
BstFNI	CGCG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	52, 67
BstKTI	GATC	4 cut(s)	80, 108, 171, 586
BstMAI	GTCTC	3 cut(s)	114, 607, 629
BstMBI	GATC	4 cut(s)	77, 105, 168, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuRI	GGCC	4 cut(s)	71, 297, 609, 631
BtgI	CCRYGG	2 cut(s)	284, 329
BtgZI	GCGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	3 cut(s)	215, 266, 366
Cac8I	GCNNGC	2 cut(s)	69, 468
CfoI	GCGC	2 cut(s)	52, 67
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	4 cut(s)	79, 107, 170, 585
DpnII	GATC	4 cut(s)	77, 105, 168, 583
EaeI	YGGCCR	4 cut(s)	69, 295, 607, 629
Eco31I	GGTCTC	1 cut(s)	629
Eco47III	AGCGCT	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	114
FaiI	YATR	4 cut(s)	225, 317, 389, 438
FaqI	GGGAC	1 cut(s)	412
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
GlaI	GCGC	2 cut(s)	51, 66
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	71, 297, 609, 631
HapII	CCGG	4 cut(s)	72, 524, 589, 632
HhaI	GCGC	2 cut(s)	52, 67
Hin1I	GRCGYC	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	50, 65
HinP1I	GCGC	2 cut(s)	50, 65
HindIII	AAGCTT	2 cut(s)	380, 497
HinfI	GANTC	2 cut(s)	311, 615
HpaII	CCGG	4 cut(s)	72, 524, 589, 632
HphI	GGTGA	2 cut(s)	126, 345
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	5 cut(s)	28, 35, 110, 168, 548
Hpy188III	TCNNGA	4 cut(s)	81, 172, 397, 514
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	2 cut(s)	32, 87
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	266, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
HspAI	GCGC	2 cut(s)	50, 65
Kzo9I	GATC	4 cut(s)	77, 105, 168, 583
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	2 cut(s)	14, 229
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	505, 514, 566
MalI	GATC	4 cut(s)	79, 107, 170, 585
MboI	GATC	4 cut(s)	77, 105, 168, 583
MboII	GAAGA	2 cut(s)	28, 432
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	2 cut(s)	297, 609
MluCI	AATT	1 cut(s)	423
MluNI	TGGCCA	2 cut(s)	297, 609
MlyI	GAGTC	1 cut(s)	609
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	55, 70, 156, 166, 288, 398, 520, 529
Mox20I	TGGCCA	2 cut(s)	297, 609
MscI	TGGCCA	2 cut(s)	297, 609
Msp20I	TGGCCA	2 cut(s)	297, 609
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	4 cut(s)	72, 524, 589, 632
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NdeII	GATC	4 cut(s)	77, 105, 168, 583
NlaIV	GGNNCC	1 cut(s)	373
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	514, 566
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	203
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	4 cut(s)	77, 105, 168, 583
SchI	GAGTC	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	2 cut(s)	14, 229
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	640
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	82, 303
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	3 cut(s)	222, 273, 373
TseFI	GTSAC	2 cut(s)	514, 566
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	2 cut(s)	514, 566
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	3 cut(s)	222, 273, 373
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.