Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

50772108 .. 50775403

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTAGTACTCCCAAAGTCACAATAGTGCGGCTGCATTCTTTCCTTCCTTCGCGTCGTCGGTGGATGGCTGAATGTGCCACACTGGATTATGATGATAATGGCGATGCTAAATCAAGAGAGAAAGATGTTGCACTGCATTTTCCTCTCCCACGGCTTTCTGGCGATTTCGGGCACGAATCTATGTTGTGCTTGCCGCGGTTTTTTCACTCAAGGCGTGCACCTGTTATCTCCACTGGTTCCTTGAAGCTTGATATAGCTTTCGGGACTGGAGGATTACCAAAGGGAAGAATTGTTGAGATTTATGGGCAGGAAGCATTTGGCAGGACTACATTCGCCCTTCACATCGTCAAGGAAGCCCAAAAGCTTGGAGGTGTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

9.51

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	48 - 126	5.2e-20	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	55, 199
AciI	CCGC	3 cut(s)	31, 197, 199
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	247
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	250, 260, 367
AluI	AGCT	3 cut(s)	250, 260, 367
Alw21I	GWGCWC	1 cut(s)	223
Alw44I	GTGCAC	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	34
BaeGI	GKGCMC	2 cut(s)	177, 223
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	32, 35, 197
BlsI	GCNGC	3 cut(s)	33, 36, 198
BmcAI	AGTACT	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	152, 197
Bse1I	ACTGG	3 cut(s)	90, 241, 274
BseDI	CCNNGG	2 cut(s)	152, 197
BseGI	GGATG	1 cut(s)	72
BseNI	ACTGG	3 cut(s)	90, 241, 274
BseSI	GKGCMC	2 cut(s)	177, 223
BseXI	GCAGC	1 cut(s)	21
Bsh1236I	CGCG	2 cut(s)	55, 199
BsiHKAI	GWGCWC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	177, 223
BspACI	CCGC	3 cut(s)	31, 197, 199
BspFNI	CGCG	2 cut(s)	55, 199
BspLI	GGNNCC	1 cut(s)	241
BsrI	ACTGG	3 cut(s)	90, 241, 274
BssECI	CCNNGG	2 cut(s)	152, 197
BstC8I	GCNNGC	2 cut(s)	194, 219
BstDSI	CCRYGG	2 cut(s)	152, 197
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	55, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSLI	GKGCMC	2 cut(s)	177, 223
BstUI	CGCG	2 cut(s)	55, 199
BstV1I	GCAGC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	368
BtgI	CCRYGG	2 cut(s)	152, 197
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	3 cut(s)	83, 134, 234
Cac8I	GCNNGC	2 cut(s)	194, 219
Cfr42I	CCGCGG	1 cut(s)	200
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	9
CviJI	RGCY	7 cut(s)	34, 71, 157, 250, 260, 359, 367
CviKI_1	RGCY	7 cut(s)	34, 71, 157, 250, 260, 359, 367
CviQI	GTAC	1 cut(s)	9
FaiI	YATR	4 cut(s)	93, 185, 257, 306
FaqI	GGGAC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	32, 35, 197
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	32, 35, 197
GluI	GCNGC	3 cut(s)	32, 35, 197
GsuI	CTGGAG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	44
HindIII	AAGCTT	2 cut(s)	248, 365
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188III	TCNNGA	2 cut(s)	117, 265
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	2 cut(s)	60, 63
HpyAV	CCTTC	3 cut(s)	56, 60, 350
HpyCH4V	TGCA	4 cut(s)	37, 134, 139, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
KspI	CCGCGG	1 cut(s)	200
LpnPI	CCDG	7 cut(s)	71, 147, 222, 237, 255, 296, 310
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	177, 223
MluCI	AATT	1 cut(s)	291
MnlI	CCTC	3 cut(s)	156, 266, 365
MseI	TTAA	1 cut(s)	382
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	37
MvnI	CGCG	2 cut(s)	55, 199
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	19
OliI	CACNNNNGTG	1 cut(s)	26
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	33, 36, 198
PspN4I	GGNNCC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	26
SacII	CCGCGG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	382
SatI	GCNGC	3 cut(s)	32, 35, 197
ScaI	AGTACT	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	177, 223
SetI	ASST	5 cut(s)	226, 252, 262, 369, 376
SfaNI	GCATC	1 cut(s)	97
Sfr303I	CCGCGG	1 cut(s)	200
SgrBI	CCGCGG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	31, 197, 199
TasI	AATT	1 cut(s)	291
TatI	WGTACW	1 cut(s)	8
TauI	GCSGC	2 cut(s)	34, 199
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	382
Tru9I	TTAA	1 cut(s)	382
TscAI	CASTG	3 cut(s)	90, 141, 241
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	19
TspRI	CASTG	3 cut(s)	90, 141, 241
VneI	GTGCAC	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.