Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

13966171 .. 13970478

Gene Structure 4308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTCTCTCTTCGAAGAGCTCGTTCGCTTCTCGCCATGGCTGTCATCCATGGCATCGCCAACGAAGAGCATCTCCGACCGATTACAGCTGAATGTGCCACACTGGATTATGATGATAATGGCGATGCTAAAGCAAGAGAGAAAGATGTTGCACTGCATTTGCCTCTCTCATGGCTTTCTAGCGATTTCGGGCACGAATCTATGTTGTCCTTGCCACGGTTTTTTCACTCAAGGCGTGCACCTGTTATCTCCACTGGTTCCTTGAAGCTTGATATAGCTTTCGGGACTAGAGGATTACCAAAGGGAAGAATTGTTGAGATTTATGGGCAGGAAGCATTTGGCAGGACTACGCTCGCCCTTCACATCGTCAAGGAAGCCCAAAAGCTTGGAGAGAGACCAAGAGTAGAAGAGGGCAAAGCTAATGGATTGCCAAGGATTACGAGAAAGAAAAGGAGGCGCTCGAAGAAGCATCAAAAGGACAAGAGTGGACCTCATCACCCCGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

180

Amino Acids

20.13

Weight (kDa)

10.27

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	52 - 131	9.2e-19	RecA N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	6 cut(s)	20, 89, 268, 278, 385, 419
AluI	AGCT	6 cut(s)	20, 89, 268, 278, 385, 419
Alw21I	GWGCWC	2 cut(s)	22, 241
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	237
Ama87I	CYCGRG	1 cut(s)	500
ApaLI	GTGCAC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	508, 529, 532
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	2 cut(s)	501, 502
AsuHPI	GGTGA	1 cut(s)	488
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	488
BaeGI	GKGCMC	2 cut(s)	195, 241
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	22, 241
BbvI	GCAGC	3 cut(s)	495, 516, 519
BcnI	CCSGG	2 cut(s)	501, 502
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	180, 288
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	3 cut(s)	509, 530, 533
BlsI	GCNGC	3 cut(s)	510, 531, 534
Bme1390I	CCNGG	2 cut(s)	501, 502
Bme18I	GGWCC	1 cut(s)	488
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	2 cut(s)	501, 502
BmsI	GCATC	5 cut(s)	63, 79, 115, 478, 495
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
Bpu14I	TTCGAA	1 cut(s)	13
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	501, 502
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	6 cut(s)	36, 49, 215, 431, 499, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	108, 259
BseDI	CCNNGG	6 cut(s)	36, 49, 215, 431, 499, 500
BseGI	GGATG	2 cut(s)	45, 510
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	108, 259
BseSI	GKGCMC	2 cut(s)	195, 241
BseXI	GCAGC	3 cut(s)	495, 516, 519
Bsh1285I	CGRYCG	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	22, 241
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	22, 195, 241
Bsp19I	CCATGG	2 cut(s)	36, 49
BspLI	GGNNCC	1 cut(s)	259
BspQI	GCTCTTC	2 cut(s)	10, 60
BspT104I	TTCGAA	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	108, 259
BssECI	CCNNGG	6 cut(s)	36, 49, 215, 431, 499, 500
BssT1I	CCWWGG	3 cut(s)	36, 49, 431
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	4 cut(s)	10, 15, 60, 402
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	237, 354
BstDSI	CCRYGG	3 cut(s)	36, 49, 215
BstF5I	GGATG	2 cut(s)	45, 510
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstMAI	GTCTC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	499, 500
BstSFI	CTRYAG	1 cut(s)	536
BstSLI	GKGCMC	2 cut(s)	195, 241
BstV1I	GCAGC	3 cut(s)	495, 516, 519
BstXI	CCANNNNNNTGG	1 cut(s)	386
BtgI	CCRYGG	3 cut(s)	36, 49, 215
BtgZI	GCGATG	2 cut(s)	40, 138
BtsCI	GGATG	2 cut(s)	45, 510
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	3 cut(s)	101, 152, 252
Cac8I	GCNNGC	2 cut(s)	237, 354
CfoI	GCGC	1 cut(s)	459
Cfr13I	GGNCC	1 cut(s)	488
Cfr9I	CCCGGG	1 cut(s)	500
CviAII	CATG	3 cut(s)	37, 50, 171
CviJI	RGCY	9 cut(s)	20, 41, 89, 175, 268, 278, 377, 385, 419
CviKI_1	RGCY	9 cut(s)	20, 41, 89, 175, 268, 278, 377, 385, 419
Eam1104I	CTCTTC	4 cut(s)	10, 15, 60, 402
EarI	CTCTTC	4 cut(s)	10, 15, 60, 402
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	36, 49, 431
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	20
EcoT14I	CCWWGG	3 cut(s)	36, 49, 431
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	3 cut(s)	36, 49, 431
FaeI	CATG	3 cut(s)	40, 53, 174
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	36, 49, 170
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	509, 530, 533
FokI	GGATG	2 cut(s)	32, 517
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	509, 530, 533
FspBI	CTAG	2 cut(s)	180, 288
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	509, 530, 533
HaeII	RGCGCY	1 cut(s)	460
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	40, 53, 174
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HindIII	AAGCTT	2 cut(s)	266, 383
HinfI	GANTC	2 cut(s)	197, 523
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	239, 488
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	2 cut(s)	239, 488
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	152, 157, 239, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	40, 53, 174
HspAI	GCGC	1 cut(s)	457
LguI	GCTCTTC	2 cut(s)	10, 60
LpnPI	CCDG	6 cut(s)	89, 240, 255, 314, 328, 514
Lsp1109I	GCAGC	3 cut(s)	495, 516, 519
LweI	GCATC	5 cut(s)	63, 79, 115, 478, 495
MaeI	CTAG	2 cut(s)	180, 288
MboII	GAAGA	5 cut(s)	27, 77, 318, 419, 475
MhlI	GDGCHC	3 cut(s)	22, 195, 241
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	174, 284, 403, 447, 501
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	501
MspR9I	CCNGG	2 cut(s)	501, 502
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	2 cut(s)	501, 502
NcoI	CCATGG	2 cut(s)	36, 49
NdeI	CATATG	1 cut(s)	518
NlaIII	CATG	3 cut(s)	40, 53, 174
NlaIV	GGNNCC	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	13
PciSI	GCTCTTC	2 cut(s)	10, 60
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	510, 531, 534
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	89
SacI	GAGCTC	1 cut(s)	22
SapI	GCTCTTC	2 cut(s)	10, 60
SatI	GCNGC	3 cut(s)	509, 530, 533
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	501, 502
SduI	GDGCHC	3 cut(s)	22, 195, 241
SetI	ASST	8 cut(s)	22, 91, 244, 270, 280, 387, 421, 493
SfaNI	GCATC	5 cut(s)	63, 79, 115, 478, 495
SfcI	CTRYAG	1 cut(s)	536
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	1 cut(s)	488
SmaI	CCCGGG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	180, 288
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	2 cut(s)	499, 500
StyI	CCWWGG	3 cut(s)	36, 49, 431
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	13, 461
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	3 cut(s)	108, 159, 259
TseI	GCWGC	3 cut(s)	508, 529, 532
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	3 cut(s)	108, 159, 259
VneI	GTGCAC	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	488
XmaI	CCCGGG	1 cut(s)	500
XspI	CTAG	2 cut(s)	180, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.