Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001190.1

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

4120 .. 4604

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001190.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ctggattatgatgataatggcgatgctaaagcaagagagaaagatgttgcactgcatttgcctctcccacggctttctggcgatttcgagcacgaatctatgttgtccttgccgtggttttttcactcaaggcgtgcacctgttatctccactggttccttgaagcttgatatagctttcgggactggaggattaccaaagggaagaattgttgagatttatgggcaggaagcatttggcaggactacgctcgcccttcacatcatcaaggaagcccaaaagcttggaggtgtgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

6.46

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	166, 176, 283
AluI	AGCT	3 cut(s)	166, 176, 283
Alw21I	GWGCWC	2 cut(s)	93, 139
Alw44I	GTGCAC	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	139
Bbv12I	GWGCWC	2 cut(s)	93, 139
BceAI	ACGGC	2 cut(s)	86, 97
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	68, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	157, 190
BseDI	CCNNGG	2 cut(s)	68, 113
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	157, 190
BseSI	GKGCMC	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	93, 139
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	93, 139
BspLI	GGNNCC	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	157, 190
BssECI	CCNNGG	2 cut(s)	68, 113
BstC8I	GCNNGC	2 cut(s)	135, 252
BstDSI	CCRYGG	2 cut(s)	68, 113
BstSLI	GKGCMC	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	284
BtgI	CCRYGG	2 cut(s)	68, 113
BtgZI	GCGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	50, 150
Cac8I	GCNNGC	2 cut(s)	135, 252
CviJI	RGCY	5 cut(s)	73, 166, 176, 275, 283
CviKI_1	RGCY	5 cut(s)	73, 166, 176, 275, 283
FaiI	YATR	4 cut(s)	9, 101, 173, 222
FaqI	GGGAC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	207
HindIII	AAGCTT	2 cut(s)	164, 281
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	50, 55, 137
LpnPI	CCDG	6 cut(s)	63, 138, 153, 171, 212, 226
LweI	GCATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	93, 139
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	3 cut(s)	72, 182, 281
MseI	TTAA	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	93, 139
SetI	ASST	5 cut(s)	142, 168, 178, 285, 292
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TscAI	CASTG	2 cut(s)	57, 157
TspRI	CASTG	2 cut(s)	57, 157
VneI	GTGCAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.