Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

9000221 .. 9008612

Gene Structure 8392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGTTGCTCTTCCGTCCTCTACTTGCACAACGTCTTGGTCTGGCTTTCTTCAAGCAACCTCGCCTCTCTTCTCTACTCTGCTCGGTCCACCAGAGAGGAAGAAGATATTCGACAACTTGCGTTGCTGAATGTGATGGTCTGCTGGATGGTGATGATAATGATGATGCCAAAGCAAGAGAAAAAGATGCTGCACTGCGTTTGGCTCTCTCACGGCTTTCTGGCGATTTCGGTAGAGAGTCTATGTTGTCTTTGCAGCGGTTTTTTCGCTCAAGACGTCCACCGATCATCTCCACTGGCTCCTTGAAGCTTGATTTAGCTCTTGGGATTGGAGGATTACCAAAGGGAAGAATCGTTGAAATTTATGGGCAAGAAGCATCTGGGAAGACCACACTTGCACTTCACATCATCAAGGAAGCTCAAAAGCTTGGAGGATATTGTGCGTATCTTGATATAGAGAATGCAATGGATCCTTCACTTGCAGAATCTATGGGTGTAAACACAGAAAACCTTCTTTTTTCACATCCCAGTTCAGCTGAGAATGTGCTAAATGTGGTTGACACTCTGACTAAAAGTGGTTCTTTGGATGTAATTGTGGTTGATAGTGTAGCCGCCCTGGTCCCCCAGTGCGAACTTGATGTTGTAATTGATGGTGCATACCGAGATGCACAGTCAAGAATTATAACCCAAGCATTACGAAAAATACATTCTTCATTATCCCGTTCTCGAACTCTTATCGTTTTTGTTAATCAGGTTAGATCAAGTCCAAGCACAGGGCAAGATTTTGGACCTATGGATGAGGTTACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCAGTACGACTGAGAATAAAAAGGACACGGTTGCTTAAGACTGAGGATAAGGTTACAGGTCTTGGGATTTCTGTGCAAGTGGTGAAAAATAAATTAGCACCTGCGATGAAGAAGGCTGATCTGGGGATACAGTTTGGGAGAGGCTTATGCCTTGAATCTGAGGTATTTCAGTTGGCTTGTGAGCATGGTCTCATTGCCAAAGAAGGAAGCAGTTACCTCATAGGACGAAAGGTGTTTAGTACTGAACATGCAGCTGAACAGTATCTGGCCAAAAATGATGCGCTTTTTGACAAGGCAGTTACAATTTTAAGGAAAATGATGTTTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

390

Amino Acids

42.6

Weight (kDa)

9.11

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AarI	CACCTGC	1 cut(s)	946
AatII	GACGTC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	946
AciI	CCGC	2 cut(s)	259, 612
AclWI	GGATC	2 cut(s)	464, 477
AcoI	YGGCCR	1 cut(s)	1104
AcsI	RAATTY	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	843, 1078
AfiI	CCNNNNNNNGG	1 cut(s)	773
AflII	CTTAAG	1 cut(s)	872
AgsI	TTSAA	5 cut(s)	55, 307, 359, 992, 1163
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	6 cut(s)	310, 320, 419, 427, 536, 1091
AluI	AGCT	6 cut(s)	310, 320, 419, 427, 536, 1091
Alw26I	GTCTC	1 cut(s)	1031
AlwI	GGATC	2 cut(s)	464, 477
AlwNI	CAGNNNCTG	1 cut(s)	1102
AoxI	GGCC	1 cut(s)	1104
ApeKI	GCWGC	4 cut(s)	191, 256, 836, 1088
ApoI	RAATTY	1 cut(s)	360
Asp700I	GAANNNNTTC	2 cut(s)	109, 510
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	3 cut(s)	88, 619, 788
AsuHPI	GGTGA	2 cut(s)	164, 931
AvaII	GGWCC	3 cut(s)	88, 619, 788
BalI	TGGCCA	1 cut(s)	1106
BamHI	GGATCC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	178, 268, 848, 1100
BccI	CCATC	3 cut(s)	131, 143, 644
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	957
BcoDI	GTCTC	1 cut(s)	1031
BfrI	CTTAAG	1 cut(s)	872
BfuAI	ACCTGC	1 cut(s)	946
BfuI	GTATCC	1 cut(s)	957
BisI	GCNGC	5 cut(s)	192, 257, 612, 837, 1089
BlsI	GCNGC	5 cut(s)	193, 258, 613, 838, 1090
BmcAI	AGTACT	1 cut(s)	1078
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	3 cut(s)	88, 619, 788
BmgT120I	GGNCC	3 cut(s)	88, 619, 788
BmiI	GGNNCC	3 cut(s)	301, 471, 621
BmrFI	CCNGG	1 cut(s)	617
BmrI	ACTGGG	2 cut(s)	522, 619
BmsI	GCATC	5 cut(s)	157, 178, 386, 655, 1105
BmuI	ACTGGG	2 cut(s)	522, 619
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	256, 844
BsaHI	GRCGYC	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	1031
BsaJI	CCNNGG	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	773
Bse1I	ACTGG	3 cut(s)	301, 528, 625
Bse3DI	GCAATG	2 cut(s)	471, 1029
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	615
BseGI	GGATG	4 cut(s)	154, 523, 592, 802
BseLI	CCNNNNNNNGG	1 cut(s)	773
BseMI	GCAATG	2 cut(s)	471, 1029
BseMII	CTCAG	4 cut(s)	528, 839, 870, 987
BseNI	ACTGG	3 cut(s)	301, 528, 625
BseXI	GCAGC	4 cut(s)	178, 268, 848, 1100
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	1106
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	773
BsmAI	GTCTC	1 cut(s)	1031
BsmFI	GGGAC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	1106
Bso31I	GGTCTC	1 cut(s)	1031
Bsp143I	GATC	4 cut(s)	285, 469, 758, 955
BspACI	CCGC	2 cut(s)	259, 612
BspANI	GGCC	1 cut(s)	1106
BspCNI	CTCAG	4 cut(s)	529, 840, 871, 988
BspLI	GGNNCC	3 cut(s)	301, 471, 621
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	2 cut(s)	464, 477
BspQI	GCTCTTC	1 cut(s)	17
BspTI	CTTAAG	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	1031
BsrDI	GCAATG	2 cut(s)	471, 1029
BsrI	ACTGG	3 cut(s)	301, 528, 625
BssECI	CCNNGG	1 cut(s)	615
BssMI	GATC	4 cut(s)	285, 469, 758, 955
BssNI	GRCGYC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	4 cut(s)	672, 867, 969, 1098
Bst6I	CTCTTC	2 cut(s)	17, 76
BstACI	GRCGYC	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	872
BstDEI	CTNAG	4 cut(s)	537, 848, 879, 996
BstF5I	GGATG	4 cut(s)	154, 523, 592, 802
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	4 cut(s)	288, 472, 761, 958
BstMAI	GTCTC	1 cut(s)	1031
BstMBI	GATC	4 cut(s)	285, 469, 758, 955
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	1088
BstSCI	CCNGG	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	178, 268, 848, 1100
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	957
BsuRI	GGCC	1 cut(s)	1106
BtgZI	GCGATG	1 cut(s)	956
BtsCI	GGATG	4 cut(s)	154, 523, 592, 802
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	3 cut(s)	194, 294, 632
BveI	ACCTGC	1 cut(s)	946
CaiI	CAGNNNCTG	1 cut(s)	1102
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	3 cut(s)	88, 619, 788
Csp6I	GTAC	2 cut(s)	842, 1077
CviAII	CATG	2 cut(s)	1022, 1085
CviQI	GTAC	2 cut(s)	842, 1077
DdeI	CTNAG	4 cut(s)	537, 848, 879, 996
DpnI	GATC	4 cut(s)	287, 471, 760, 957
DpnII	GATC	4 cut(s)	285, 469, 758, 955
EaeI	YGGCCR	1 cut(s)	1104
Eam1104I	CTCTTC	2 cut(s)	17, 76
EarI	CTCTTC	2 cut(s)	17, 76
Eco31I	GGTCTC	1 cut(s)	1031
Eco47I	GGWCC	3 cut(s)	88, 619, 788
EcoRII	CCWGG	1 cut(s)	615
FaeI	CATG	2 cut(s)	1025, 1088
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	1021, 1084
Fnu4HI	GCNGC	5 cut(s)	192, 257, 612, 837, 1089
FokI	GGATG	4 cut(s)	161, 510, 599, 809
Fsp4HI	GCNGC	5 cut(s)	192, 257, 612, 837, 1089
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	5 cut(s)	192, 257, 612, 837, 1089
HaeIII	GGCC	1 cut(s)	1106
HhaI	GCGC	1 cut(s)	1120
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	1025, 1088
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	308, 425
HinfI	GANTC	5 cut(s)	239, 351, 485, 828, 992
HphI	GGTGA	2 cut(s)	164, 931
Hpy166II	GTNNAC	4 cut(s)	91, 281, 499, 559
Hpy188I	TCNGA	2 cut(s)	567, 997
Hpy188III	TCNNGA	4 cut(s)	273, 449, 675, 726
Hpy8I	GTNNAC	4 cut(s)	91, 281, 499, 559
HpyAV	CCTTC	4 cut(s)	483, 521, 943, 1034
HpyCH4III	ACNGT	4 cut(s)	672, 867, 969, 1098
HpyCH4IV	ACGT	2 cut(s)	34, 277
HpyF3I	CTNAG	4 cut(s)	537, 848, 879, 996
HpySE526I	ACGT	2 cut(s)	34, 277
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	1025, 1088
HspAI	GCGC	1 cut(s)	1118
Kzo9I	GATC	4 cut(s)	285, 469, 758, 955
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	4 cut(s)	178, 268, 848, 1100
LweI	GCATC	5 cut(s)	157, 178, 386, 655, 1105
MaeII	ACGT	2 cut(s)	34, 277
MaeIII	GTNAC	4 cut(s)	802, 889, 1049, 1135
MalI	GATC	4 cut(s)	287, 471, 760, 957
MboI	GATC	4 cut(s)	285, 469, 758, 955
MboII	GAAGA	9 cut(s)	4, 43, 63, 114, 117, 360, 397, 702, 958
MflI	RGATCY	1 cut(s)	469
MlsI	TGGCCA	1 cut(s)	1106
MluCI	AATT	6 cut(s)	360, 591, 645, 678, 929, 1140
MluNI	TGGCCA	1 cut(s)	1106
MlyI	GAGTC	1 cut(s)	248
Mox20I	TGGCCA	1 cut(s)	1106
MroXI	GAANNNNTTC	2 cut(s)	109, 510
MscI	TGGCCA	1 cut(s)	1106
MseI	TTAA	3 cut(s)	747, 873, 1145
Msp20I	TGGCCA	1 cut(s)	1106
MspA1I	CMGCKG	3 cut(s)	259, 536, 1091
MspCI	CTTAAG	1 cut(s)	872
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	285, 469, 758, 955
NlaIII	CATG	2 cut(s)	1025, 1088
NlaIV	GGNNCC	3 cut(s)	301, 471, 621
NspI	RCATGY	1 cut(s)	1088
PaqCI	CACCTGC	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	109, 510
PfeI	GAWTC	4 cut(s)	351, 485, 828, 992
PkrI	GCNGC	5 cut(s)	193, 258, 613, 838, 1090
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	683
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	301, 471, 621
PspPI	GGNCC	3 cut(s)	88, 619, 788
PstNI	CAGNNNCTG	1 cut(s)	1102
PsuI	RGATCY	1 cut(s)	469
PvuII	CAGCTG	2 cut(s)	536, 1091
RsaI	GTAC	2 cut(s)	843, 1078
RsaNI	GTAC	2 cut(s)	842, 1077
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	747, 873, 1145
SatI	GCNGC	5 cut(s)	192, 257, 612, 837, 1089
Sau3AI	GATC	4 cut(s)	285, 469, 758, 955
Sau96I	GGNCC	3 cut(s)	88, 619, 788
ScaI	AGTACT	1 cut(s)	1078
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	617
SfaNI	GCATC	5 cut(s)	157, 178, 386, 655, 1105
SinI	GGWCC	3 cut(s)	88, 619, 788
SmlI	CTYRAG	3 cut(s)	271, 823, 872
SmoI	CTYRAG	3 cut(s)	271, 823, 872
Sse9I	AATT	6 cut(s)	360, 591, 645, 678, 929, 1140
SsiI	CCGC	2 cut(s)	259, 612
StyD4I	CCNGG	1 cut(s)	615
TaaI	ACNGT	4 cut(s)	672, 867, 969, 1098
TaiI	ACGT	2 cut(s)	37, 280
TaqI	TCGA	2 cut(s)	113, 727
TaqII	GACCGA	1 cut(s)	76
TasI	AATT	6 cut(s)	360, 591, 645, 678, 929, 1140
TatI	WGTACW	1 cut(s)	1076
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	4 cut(s)	351, 485, 828, 992
Tru1I	TTAA	3 cut(s)	747, 873, 1145
Tru9I	TTAA	3 cut(s)	747, 873, 1145
TscAI	CASTG	3 cut(s)	201, 301, 632
TseI	GCWGC	4 cut(s)	191, 256, 836, 1088
TspDTI	ATGAA	2 cut(s)	702, 959
TspGWI	ACGGA	1 cut(s)	5
TspRI	CASTG	3 cut(s)	201, 301, 632
Vha464I	CTTAAG	1 cut(s)	872
VpaK11BI	GGWCC	3 cut(s)	88, 619, 788
XapI	RAATTY	1 cut(s)	360
XceI	RCATGY	1 cut(s)	1088
XmnI	GAANNNNTTC	2 cut(s)	109, 510
ZraI	GACGTC	1 cut(s)	278
ZrmI	AGTACT	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.