Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012654

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Forward (+)

10820 .. 13838

Gene Structure 3019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12654g00020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAAAGACGTCCGCCTGTCATCTCCACTGGCTCCTTGAAGCTTGATCTAGCTCTTGGGATTGGAGGATTACCCAAGGGAAGAATCGTTGAAATTTATGGGCAAGAAGCATCTGGGAAGACGACGCTTGCACTTCACATCATCAAGGAGGCTCAAAAGCTTGGAGGACTTTGTGCATTTCTTGATATAGAGAATGCCATGGAATGTTCACTTGCAGAATCTATGGGTATAAACACCAAAAACCTTCTCTTTTCGCGTCCCGATTCTGCTGAGAATATGCTATGTGCTGTTGACACTCTGACTAAAAGTGGTTCTTTGGATGTGATTGTAGTTGATAGTGTAGCTGCCCTGGTCCCCCAGTGCGAACTTGATGCTGAAATTGATGGTGAATACCGAGATGCACAATCAAGAATCATAACCCAAGCATTACGAAAAATACATTCTTCATTATCCCATTCTCGTACCCTTATTGTTTTTATTAACCAGATTAGATCAAGTCCAAAGTCAGGGAAAGAATTTGGACCTACGGATGAGGTTACTTGTGGTGGAAATGCCTTGAAATTCTACGCGGCAGTGCGGTTGAGACTTAAAAGGATACAGTTGCTTCAGACTGAGGAAAAGGTTACAGGTCTTGGGATTTCTGTGCAAGTTGTGAAAAATAAATTAGCACCTGCAATGAAGAAGGCCGATCTGGGAATACAGTTCGGGAGAGGCTTAAGCTGTGAATCAGAGGTATTGCAGTTGGCTTGTGAACACGGGGTCATTGCCAAAGAAGGAAGCAACTACCTCATAGGGCAAAAGGTTTTTAGTAATGAACGTGCAGCTGAACAGTGTCTGGCAAAAAACGATGCGCTTTTTGATGAGGTAGTAACGATCTTAAGGAAAATACTGTTTGAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

301

Amino Acids

32.57

Weight (kDa)

8.36

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	7 - 240	1.4e-83	RecA N-terminal domain
Rad51	PF08423	8 - 199	2.8e-10	Rad51
ATPase	PF06745	9 - 80	2.8e-06	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	679
AatII	GACGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	679
AccII	CGCG	2 cut(s)	256, 569
AciI	CCGC	3 cut(s)	14, 569, 577
AcsI	RAATTY	3 cut(s)	93, 515, 560
AcuI	CTGAAG	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	506
AflII	CTTAAG	2 cut(s)	715, 877
AgsI	TTSAA	4 cut(s)	40, 92, 559, 896
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	6 cut(s)	43, 53, 160, 344, 720, 824
AluI	AGCT	6 cut(s)	43, 53, 160, 344, 720, 824
Alw26I	GTCTC	1 cut(s)	577
AlwNI	CAGNNNCTG	1 cut(s)	835
AoxI	GGCC	1 cut(s)	684
ApeKI	GCWGC	2 cut(s)	344, 821
ApoI	RAATTY	3 cut(s)	93, 515, 560
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	2 cut(s)	352, 521
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	352, 521
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	331, 833
BccI	CCATC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	1 cut(s)	50
BfrI	CTTAAG	2 cut(s)	715, 877
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	3 cut(s)	345, 570, 822
BlsI	GCNGC	3 cut(s)	346, 571, 823
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	2 cut(s)	352, 521
BmgT120I	GGNCC	2 cut(s)	352, 521
BmiI	GGNNCC	2 cut(s)	34, 354
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	4 cut(s)	119, 361, 388, 838
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	75, 198, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	506
Bse1I	ACTGG	2 cut(s)	34, 358
Bse3DI	GCAATG	2 cut(s)	681, 762
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	75, 198, 348
BseGI	GGATG	2 cut(s)	325, 535
BseLI	CCNNNNNNNGG	1 cut(s)	506
BseMI	GCAATG	2 cut(s)	681, 762
BseMII	CTCAG	2 cut(s)	261, 603
BseNI	ACTGG	2 cut(s)	34, 358
BseXI	GCAGC	2 cut(s)	331, 833
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	2 cut(s)	256, 569
BshFI	GGCC	1 cut(s)	686
BslFI	GGGAC	2 cut(s)	243, 338
BslI	CCNNNNNNNGG	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	2 cut(s)	243, 338
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	686
Bsp143I	GATC	4 cut(s)	46, 491, 688, 873
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	3 cut(s)	14, 569, 577
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	2 cut(s)	262, 604
BspFNI	CGCG	2 cut(s)	256, 569
BspLI	GGNNCC	2 cut(s)	34, 354
BspMI	ACCTGC	1 cut(s)	679
BspTI	CTTAAG	2 cut(s)	715, 877
BsrDI	GCAATG	2 cut(s)	681, 762
BsrI	ACTGG	2 cut(s)	34, 358
BssECI	CCNNGG	3 cut(s)	75, 198, 348
BssMI	GATC	4 cut(s)	46, 491, 688, 873
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	2 cut(s)	75, 198
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	600, 702, 831, 891
BstACI	GRCGYC	1 cut(s)	10
BstAFI	CTTAAG	2 cut(s)	715, 877
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	270, 612
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	325, 535
BstFNI	CGCG	2 cut(s)	256, 569
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	4 cut(s)	49, 494, 691, 876
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	46, 491, 688, 873
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	2 cut(s)	256, 569
BstV1I	GCAGC	2 cut(s)	331, 833
BstV2I	GAAGAC	1 cut(s)	125
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	325, 535
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	4 cut(s)	27, 365, 579, 836
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	2 cut(s)	352, 521
CseI	GACGC	2 cut(s)	133, 245
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	199
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	270, 612
DpnI	GATC	4 cut(s)	48, 493, 690, 875
DpnII	GATC	4 cut(s)	46, 491, 688, 873
Eco130I	CCWWGG	2 cut(s)	75, 198
Eco47I	GGWCC	2 cut(s)	352, 521
Eco57I	CTGAAG	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	75, 198
ErhI	CCWWGG	2 cut(s)	75, 198
FaeI	CATG	1 cut(s)	202
FaiI	YATR	9 cut(s)	99, 188, 200, 224, 230, 278, 283, 416, 791
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	2 cut(s)	243, 338
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	345, 570, 822
FokI	GGATG	2 cut(s)	332, 542
Fsp4HI	GCNGC	3 cut(s)	345, 570, 822
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	3 cut(s)	345, 570, 822
HaeIII	GGCC	1 cut(s)	686
HgaI	GACGC	2 cut(s)	133, 245
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	2 cut(s)	41, 158
HinfI	GANTC	5 cut(s)	84, 218, 263, 411, 725
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	209, 292, 752
Hpy188I	TCNGA	3 cut(s)	300, 609, 730
Hpy188III	TCNNGA	4 cut(s)	182, 260, 408, 706
Hpy8I	GTNNAC	3 cut(s)	209, 292, 752
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	254, 676, 767
HpyCH4III	ACNGT	4 cut(s)	600, 702, 831, 891
HpyCH4IV	ACGT	2 cut(s)	10, 817
HpyCH4V	TGCA	8 cut(s)	131, 176, 215, 401, 646, 674, 739, 821
HpyF3I	CTNAG	2 cut(s)	270, 612
HpySE526I	ACGT	2 cut(s)	10, 817
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	851
Kzo9I	GATC	4 cut(s)	46, 491, 688, 873
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	2 cut(s)	331, 833
LweI	GCATC	4 cut(s)	119, 361, 388, 838
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	10, 817
MaeIII	GTNAC	3 cut(s)	535, 622, 868
MalI	GATC	4 cut(s)	48, 493, 690, 875
MboI	GATC	4 cut(s)	46, 491, 688, 873
MboII	GAAGA	4 cut(s)	93, 130, 435, 691
MluCI	AATT	5 cut(s)	93, 378, 515, 560, 662
MnlI	CCTC	9 cut(s)	59, 142, 158, 526, 607, 704, 724, 797, 856
MseI	TTAA	4 cut(s)	480, 588, 716, 878
MspA1I	CMGCKG	1 cut(s)	824
MspCI	CTTAAG	2 cut(s)	715, 877
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	256, 569
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	46, 491, 688, 873
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	34, 354
PaqCI	CACCTGC	1 cut(s)	679
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	5 cut(s)	84, 218, 263, 411, 725
PkrI	GCNGC	3 cut(s)	346, 571, 823
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	34, 354
PspPI	GGNCC	2 cut(s)	352, 521
PstNI	CAGNNNCTG	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	4 cut(s)	480, 588, 716, 878
SatI	GCNGC	3 cut(s)	345, 570, 822
Sau3AI	GATC	4 cut(s)	46, 491, 688, 873
Sau96I	GGNCC	2 cut(s)	352, 521
ScrFI	CCNGG	1 cut(s)	350
SfaNI	GCATC	4 cut(s)	119, 361, 388, 838
SinI	GGWCC	2 cut(s)	352, 521
SmlI	CTYRAG	2 cut(s)	715, 877
SmoI	CTYRAG	2 cut(s)	715, 877
Sse9I	AATT	5 cut(s)	93, 378, 515, 560, 662
SsiI	CCGC	3 cut(s)	14, 569, 577
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	75, 198
TaaI	ACNGT	4 cut(s)	600, 702, 831, 891
TaiI	ACGT	2 cut(s)	13, 820
TasI	AATT	5 cut(s)	93, 378, 515, 560, 662
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	5 cut(s)	84, 218, 263, 411, 725
Tru1I	TTAA	4 cut(s)	480, 588, 716, 878
Tru9I	TTAA	4 cut(s)	480, 588, 716, 878
TscAI	CASTG	4 cut(s)	34, 365, 579, 836
TseI	GCWGC	2 cut(s)	344, 821
TspDTI	ATGAA	4 cut(s)	17, 435, 692, 828
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	4 cut(s)	34, 365, 579, 836
Vha464I	CTTAAG	2 cut(s)	715, 877
VpaK11BI	GGWCC	2 cut(s)	352, 521
XapI	RAATTY	3 cut(s)	93, 515, 560
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.