Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Forward (+)

19296339 .. 19300423

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1164600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGTTGCTTCTCCGTCCTCCGCTTGCACAGCGGCTTGGTCTGGCTGCCTTCAAGCAACCTCGTCTTTCTTCCGTACTTTGCTCCTTCCTCCAGAGAGGAAGAAGACATTGGACAAATTGTGCCGCTGAATGTGATGGACTGTTGGATCATGATGATAATGACGATGCCAAAGCAAGGGAGAAAGAAGATGCATTGAGTTCGGCTCTCTCACGGCTTTCCGGTGATTTTGGCCGGGAGTCTATGATGTCAATGCAGCGGTTTTCTCGATCAAGACGTCCGCCTGTCATCTCCACTGGCTCCTTGAAGCTTGATCTAGCTCTTGGGATTGGAGGATTACCCAAGGGAAGAATCATTGAAATTTACGGGCAAGAAGCATCCGGGAAGACCACGCTTGCACTTCACATCATCAAGGAGGCTCAAAAGCTTGGAGGACTTTGTGCATTTCTTGATATAGAGAATGCCATGGAATGTTCACTTGCAGAATCTATGGGTATAAACACCAAAAACCTTCTCTTTTCGCGTCCCGATTCTGCTGAGAATATGCTATGTGCTGTTGACACTCTGACTAAAAGTGGTTCTTTGGATGTAATTGTGGTTGATAGTGTAGCTGCCCTGGTCCCCCAGTGCGAACTTGATGCTGAAATTGATAGTGACTACCGAGATGCACAATCAAGAATCATAACCCAAGCATTACGAAAAATACATTCTTCATTATCCCATTCTCGTACCCTTATTGTTTTTATTAACCAGATTAGATCAAGTCCAAAGTCAGGGAAAGAATTTGGACCTACAGATGAGGTTACGTGTGGTGGAAATGCCTTGAAATTCTACGCAGCAGTGCGGTTGAGACTTAAAAGAATACAGTTGCTTCAGACTGAGGATAAGGTTACAGGTCTTGGGATTTCTGTGCAAGTTGTGAAAAATAAATTAGCACCTGCAATGAAGAAGGCCGATCTGGGGATACACTTCGGGAGAGGCTTAAGCTGTGAATCAGAGGTATTGCAGTTGGCTTGTGAACACAGGGTCATTGCCAAAGAAGGAAGCAACTACCTCATAGGGCAGAAGGTTTTTAGTAATGAAAATTCAGCCGAACAGTATTTGGCAAAAAACGATGCGCTTTTTGATGAGGTAGTAACGATCTTAAGGAAAATACTGTTTGAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

390

Amino Acids

42.65

Weight (kDa)

8.46

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	65 - 329	1.1e-87	RecA N-terminal domain
Rad51	PF08423	97 - 288	9.8e-09	Rad51
ATPase	PF06745	98 - 170	5.7e-06	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	946
AatII	GACGTC	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	946
AccII	CGCG	1 cut(s)	523
AciI	CCGC	6 cut(s)	23, 34, 126, 259, 281, 844
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	360, 782, 827, 1084
AcuI	CTGAAG	1 cut(s)	857
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	78, 730
AfiI	CCNNNNNNNGG	3 cut(s)	177, 773, 960
AflII	CTTAAG	2 cut(s)	982, 1144
AflIII	ACRYGT	1 cut(s)	806
AgsI	TTSAA	5 cut(s)	55, 307, 359, 826, 1163
AjnI	CCWGG	1 cut(s)	615
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	5 cut(s)	310, 320, 427, 611, 987
AluI	AGCT	5 cut(s)	310, 320, 427, 611, 987
Alw26I	GTCTC	1 cut(s)	844
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	2 cut(s)	232, 951
ApeKI	GCWGC	4 cut(s)	47, 256, 611, 836
ApoI	RAATTY	4 cut(s)	360, 782, 827, 1084
AspLEI	GCGC	1 cut(s)	1120
AspS9I	GGNCC	2 cut(s)	619, 788
AsuC2I	CCSGG	2 cut(s)	236, 382
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	619, 788
BbsI	GAAGAC	2 cut(s)	112, 392
BbvI	GCAGC	4 cut(s)	34, 268, 598, 848
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	4 cut(s)	183, 217, 620, 654
BciT130I	CCWGG	1 cut(s)	617
BciVI	GTATCC	1 cut(s)	957
BcnI	CCSGG	2 cut(s)	236, 382
BcoDI	GTCTC	1 cut(s)	844
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	792
BfrI	CTTAAG	2 cut(s)	982, 1144
BfuAI	ACCTGC	1 cut(s)	946
BfuI	GTATCC	1 cut(s)	957
BisI	GCNGC	6 cut(s)	35, 48, 126, 257, 612, 837
BlsI	GCNGC	6 cut(s)	36, 49, 127, 258, 613, 838
Bme1390I	CCNGG	3 cut(s)	236, 382, 617
Bme18I	GGWCC	2 cut(s)	619, 788
BmgT120I	GGNCC	2 cut(s)	619, 788
BmiI	GGNNCC	2 cut(s)	301, 621
BmrFI	CCNGG	3 cut(s)	236, 382, 617
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	6 cut(s)	157, 181, 386, 628, 655, 1105
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	2 cut(s)	112, 392
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
BpmI	CTGGAG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	236, 382
BsaAI	YACGTR	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	342, 465, 615
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 773, 960
Bse1I	ACTGG	2 cut(s)	301, 625
Bse3DI	GCAATG	2 cut(s)	948, 1029
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	342, 465, 615
BseGI	GGATG	2 cut(s)	377, 592
BseLI	CCNNNNNNNGG	3 cut(s)	177, 773, 960
BseMI	GCAATG	2 cut(s)	948, 1029
BseMII	CTCAG	2 cut(s)	528, 870
BseNI	ACTGG	2 cut(s)	301, 625
BseXI	GCAGC	4 cut(s)	34, 268, 598, 848
Bsh1236I	CGCG	1 cut(s)	523
BshFI	GGCC	2 cut(s)	234, 953
BsiSI	CCGG	3 cut(s)	222, 235, 381
BslFI	GGGAC	2 cut(s)	510, 605
BslI	CCNNNNNNNGG	3 cut(s)	177, 773, 960
BsmAI	GTCTC	1 cut(s)	844
BsmFI	GGGAC	2 cut(s)	510, 605
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	234, 953
Bsp143I	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
Bsp19I	CCATGG	1 cut(s)	465
BspACI	CCGC	6 cut(s)	23, 34, 126, 259, 281, 844
BspANI	GGCC	2 cut(s)	234, 953
BspCNI	CTCAG	2 cut(s)	529, 871
BspFNI	CGCG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	301, 621
BspMI	ACCTGC	1 cut(s)	946
BspPI	GGATC	1 cut(s)	156
BspTI	CTTAAG	2 cut(s)	982, 1144
BsrDI	GCAATG	2 cut(s)	948, 1029
BsrI	ACTGG	2 cut(s)	301, 625
BssECI	CCNNGG	3 cut(s)	342, 465, 615
BssMI	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
BssNI	GRCGYC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	342, 465
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	4 cut(s)	144, 867, 1098, 1158
BstACI	GRCGYC	1 cut(s)	277
BstAFI	CTTAAG	2 cut(s)	982, 1144
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	27, 396
BstDEI	CTNAG	2 cut(s)	537, 879
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	377, 592
BstFNI	CGCG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	1120
BstKTI	GATC	6 cut(s)	151, 272, 316, 761, 958, 1143
BstMAI	GTCTC	1 cut(s)	844
BstMBI	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	3 cut(s)	234, 380, 615
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	4 cut(s)	34, 268, 598, 848
BstV2I	GAAGAC	2 cut(s)	112, 392
BsuI	GTATCC	1 cut(s)	957
BsuRI	GGCC	2 cut(s)	234, 953
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	377, 592
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	3 cut(s)	294, 632, 846
BveI	ACCTGC	1 cut(s)	946
Cac8I	GCNNGC	2 cut(s)	27, 396
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	1120
Cfr13I	GGNCC	2 cut(s)	619, 788
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	77, 729
CviAII	CATG	2 cut(s)	152, 466
CviQI	GTAC	2 cut(s)	77, 729
DdeI	CTNAG	2 cut(s)	537, 879
DpnI	GATC	6 cut(s)	150, 271, 315, 760, 957, 1142
DpnII	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
EaeI	YGGCCR	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	342, 465
Eco47I	GGWCC	2 cut(s)	619, 788
Eco57I	CTGAAG	1 cut(s)	857
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	342, 465
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	2 cut(s)	342, 465
FaeI	CATG	2 cut(s)	155, 469
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	2 cut(s)	510, 605
FatI	CATG	2 cut(s)	151, 465
Fnu4HI	GCNGC	6 cut(s)	35, 48, 126, 257, 612, 837
FokI	GGATG	2 cut(s)	364, 599
Fsp4HI	GCNGC	6 cut(s)	35, 48, 126, 257, 612, 837
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	1119
GluI	GCNGC	6 cut(s)	35, 48, 126, 257, 612, 837
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	234, 953
HapII	CCGG	3 cut(s)	222, 235, 381
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	1120
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	155, 469
Hin6I	GCGC	1 cut(s)	1118
HinP1I	GCGC	1 cut(s)	1118
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	2 cut(s)	308, 425
HinfI	GANTC	6 cut(s)	239, 351, 485, 530, 678, 992
HpaII	CCGG	3 cut(s)	222, 235, 381
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	476, 559, 1019
Hpy188I	TCNGA	3 cut(s)	567, 876, 997
Hpy188III	TCNNGA	8 cut(s)	94, 152, 267, 273, 449, 527, 675, 973
Hpy8I	GTNNAC	3 cut(s)	476, 559, 1019
HpyAV	CCTTC	6 cut(s)	61, 97, 521, 943, 1034, 1060
HpyCH4III	ACNGT	4 cut(s)	144, 867, 1098, 1158
HpyCH4IV	ACGT	2 cut(s)	277, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	537, 879
HpySE526I	ACGT	2 cut(s)	277, 806
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	155, 469
HspAI	GCGC	1 cut(s)	1118
Kzo9I	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
LmnI	GCTCC	2 cut(s)	89, 305
Lsp1109I	GCAGC	4 cut(s)	34, 268, 598, 848
LweI	GCATC	6 cut(s)	157, 181, 386, 628, 655, 1105
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	2 cut(s)	277, 806
MaeIII	GTNAC	4 cut(s)	653, 802, 889, 1135
MalI	GATC	6 cut(s)	150, 271, 315, 760, 957, 1142
MboI	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
MboII	GAAGA	8 cut(s)	63, 114, 117, 200, 360, 397, 702, 958
MluCI	AATT	8 cut(s)	118, 360, 591, 645, 782, 827, 929, 1084
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	126
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	4 cut(s)	747, 855, 983, 1145
MspA1I	CMGCKG	3 cut(s)	34, 128, 259
MspCI	CTTAAG	2 cut(s)	982, 1144
MspI	CCGG	3 cut(s)	222, 235, 381
MspR9I	CCNGG	3 cut(s)	236, 382, 617
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	2 cut(s)	236, 382
NcoI	CCATGG	1 cut(s)	465
NdeII	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
NlaIII	CATG	2 cut(s)	155, 469
NlaIV	GGNNCC	2 cut(s)	301, 621
NmuCI	GTSAC	1 cut(s)	653
NsiI	ATGCAT	1 cut(s)	196
PagI	TCATGA	1 cut(s)	151
PaqCI	CACCTGC	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	5 cut(s)	351, 485, 530, 678, 992
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	36, 49, 127, 258, 613, 838
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Ppu21I	YACGTR	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	301, 621
PspPI	GGNCC	2 cut(s)	619, 788
RsaI	GTAC	2 cut(s)	78, 730
RsaNI	GTAC	2 cut(s)	77, 729
SaqAI	TTAA	4 cut(s)	747, 855, 983, 1145
SatI	GCNGC	6 cut(s)	35, 48, 126, 257, 612, 837
Sau3AI	GATC	6 cut(s)	148, 269, 313, 758, 955, 1140
Sau96I	GGNCC	2 cut(s)	619, 788
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	3 cut(s)	236, 382, 617
SfaNI	GCATC	6 cut(s)	157, 181, 386, 628, 655, 1105
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	2 cut(s)	619, 788
SmlI	CTYRAG	2 cut(s)	982, 1144
SmoI	CTYRAG	2 cut(s)	982, 1144
Sse9I	AATT	8 cut(s)	118, 360, 591, 645, 782, 827, 929, 1084
SsiI	CCGC	6 cut(s)	23, 34, 126, 259, 281, 844
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	3 cut(s)	234, 380, 615
StyI	CCWWGG	2 cut(s)	342, 465
TaaI	ACNGT	4 cut(s)	144, 867, 1098, 1158
TaiI	ACGT	2 cut(s)	280, 809
TaqI	TCGA	1 cut(s)	268
TasI	AATT	8 cut(s)	118, 360, 591, 645, 782, 827, 929, 1084
TauI	GCSGC	2 cut(s)	37, 128
TfiI	GAWTC	5 cut(s)	351, 485, 530, 678, 992
Tru1I	TTAA	4 cut(s)	747, 855, 983, 1145
Tru9I	TTAA	4 cut(s)	747, 855, 983, 1145
TscAI	CASTG	3 cut(s)	301, 632, 846
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	4 cut(s)	47, 256, 611, 836
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	702, 959, 1095
TspGWI	ACGGA	2 cut(s)	5, 64
TspRI	CASTG	3 cut(s)	301, 632, 846
Vha464I	CTTAAG	2 cut(s)	982, 1144
VpaK11BI	GGWCC	2 cut(s)	619, 788
XapI	RAATTY	4 cut(s)	360, 782, 827, 1084
XspI	CTAG	1 cut(s)	317
ZraI	GACGTC	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.