Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

19763306 .. 19768650

Gene Structure 5345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGTTTACTCAACTCTCCTCCACTCGCACACCGTCTTGCCCTGGCGGCGTTCACCCACCCTCGCCTCTCTTCTCTACTCTCCTCTTTTGTTTCTCCACACAGAGGAAGAAGACACACGACGACGGCGACTTGTAGTGGTGAATGTGCTACACCGGACTATGATGATGATAATGACGATGCTAAAGCAAGAGACAAAGATGCTGCACTGCATTTGGCTCTCTCACGGCTTTCTGGGGATTTCGGGCACGAATCCATGTTGTCCCTGCCGCGGTTTTTTCGCTCGAGGCGCGCACCTGTTATCTCCACTGGCTCCTTGAAGCTTGATATAGCTCTGGGGACTGGAGGATTGCCAAAGGGAAGAATTGTTGAGATTTATGGGCAGGAAGCATCTGGGAAGACTACGCTTGCCCTTCACATCGTCAAGGAAGCCCAAAAGCTTGGAGGGTATTGTGCATATCTGGATGTAGAGAATGCGTTGGACCCTTCACTTGCAGAATCGATGGGTGTAAACACAGAAAACCTTCTCATTTCGCATCCCAATTCTGCTGAAAATGTGCTGAATGTGGTCGACACTCTGACGAAAAGTGGTTCCTTGGATGTAATTGTTGTGGATAGTGTAGCTGCTCTTGTCCCCCAGTGTGAACTTGATGTTGCAATTGGTAGTGCATACCCAGACGCTCAGTCAAGAATAATGACCCAAGCACTACGGAAAATTCATTCTTCATTAAGCCATTCTCAAGCACTTGTTGTCTTTATAAATCAGGTTAGATCAAGTCCAAACTCAGGGCAAGGTTTTGGACCTGTGGATGAGGTCACCTGTGGTGGAAATGCCTTGAGATTCTATGCAGCAGTTCGATTGAGAATAAAAAGAACCCAGTTGCTTAAGACTGAGGATCAGATTACAGGTCTTGGGATTTCCGTGCAAGTGGTGAAAAATAAATTGGCACTTGCAATGAAGAAGGCTGATCTGGGGATACAGTTTGGTAGAGGGTTATGTTGTGAATCTGAGGTATTGCAATTGGCTTGCGAACATGGGGTCATTGCAAAAGAAGGAAGCAACTACCACATAGGAAGAAAGGTTTTTAGTAATGTACATTCAGCAGAACAGTATTTGGCTAAAAATGATGATATTTTGAATAAGATAGTTAGGATCTTGAGGCACACTTTATTTGAAGAAGATAGTCAATTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

398

Amino Acids

43.05

Weight (kDa)

7.66

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	69 - 332	1.8e-87	RecA N-terminal domain
Rad51	PF08423	100 - 292	2.5e-10	Rad51
ATPase	PF06745	102 - 174	3.5e-06	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	2 cut(s)	271, 291
AciI	CCGC	3 cut(s)	47, 269, 271
AclWI	GGATC	2 cut(s)	903, 1160
AcsI	RAATTY	1 cut(s)	714
AfaI	GTAC	1 cut(s)	1095
AfiI	CCNNNNNNNGG	3 cut(s)	104, 270, 785
AflII	CTTAAG	1 cut(s)	884
AgsI	TTSAA	3 cut(s)	319, 1138, 1175
AhdI	GACNNNNNGTC	1 cut(s)	682
AjnI	CCWGG	1 cut(s)	42
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	4 cut(s)	322, 332, 439, 623
AluI	AGCT	4 cut(s)	322, 332, 439, 623
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	903, 1160
Ama87I	CYCGRG	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	203, 623, 848
ApoI	RAATTY	1 cut(s)	714
ArsI	GACNNNNNNTTYG	2 cut(s)	1023, 1055
Asp700I	GAANNNNTTC	1 cut(s)	522
AspLEI	GCGC	2 cut(s)	291, 293
AspS9I	GGNCC	2 cut(s)	481, 800
AsuHPI	GGTGA	4 cut(s)	46, 152, 808, 943
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	2 cut(s)	481, 800
BaeGI	GKGCMC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	118, 404
BbvI	GCAGC	3 cut(s)	190, 610, 860
BccI	CCATC	1 cut(s)	496
BceAI	ACGGC	2 cut(s)	141, 242
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	1 cut(s)	969
BcoDI	GTCTC	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	884
BfuI	GTATCC	1 cut(s)	969
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	5 cut(s)	48, 204, 269, 624, 849
BlsI	GCNGC	5 cut(s)	49, 205, 270, 625, 850
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	481, 800
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	481, 800
BmiI	GGNNCC	3 cut(s)	313, 483, 592
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	2 cut(s)	631, 871
BmsI	GCATC	4 cut(s)	169, 190, 398, 544
BmuI	ACTGGG	2 cut(s)	631, 871
BpiI	GAAGAC	2 cut(s)	118, 404
BpmI	CTGGAG	1 cut(s)	363
BpuEI	CTTGAG	3 cut(s)	723, 856, 1177
Bsa29I	ATCGAT	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	42, 269, 594
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 270, 785
Bse1I	ACTGG	4 cut(s)	313, 346, 637, 877
Bse3DI	GCAATG	2 cut(s)	960, 1041
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	3 cut(s)	42, 269, 594
BseGI	GGATG	4 cut(s)	469, 535, 604, 814
BseLI	CCNNNNNNNGG	3 cut(s)	104, 270, 785
BseMI	GCAATG	2 cut(s)	960, 1041
BseMII	CTCAG	4 cut(s)	695, 798, 882, 999
BseNI	ACTGG	4 cut(s)	313, 346, 637, 877
BsePI	GCGCGC	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	9, 73
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	3 cut(s)	190, 610, 860
BsgI	GTGCAG	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	271, 291
BshVI	ATCGAT	1 cut(s)	500
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	3 cut(s)	247, 352, 617
BslI	CCNNNNNNNGG	3 cut(s)	104, 270, 785
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	3 cut(s)	247, 352, 617
BsmI	GAATGC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	1093
Bsp143I	GATC	4 cut(s)	770, 895, 967, 1152
BspACI	CCGC	3 cut(s)	47, 269, 271
BspCNI	CTCAG	4 cut(s)	694, 797, 883, 1000
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	2 cut(s)	271, 291
BspLI	GGNNCC	3 cut(s)	313, 483, 592
BspPI	GGATC	2 cut(s)	903, 1160
BspTI	CTTAAG	1 cut(s)	884
BsrDI	GCAATG	2 cut(s)	960, 1041
BsrGI	TGTACA	1 cut(s)	1093
BsrI	ACTGG	4 cut(s)	313, 346, 637, 877
BssECI	CCNNGG	3 cut(s)	42, 269, 594
BssHII	GCGCGC	1 cut(s)	289
BssMI	GATC	4 cut(s)	770, 895, 967, 1152
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	35, 981, 1110
Bst6I	CTCTTC	1 cut(s)	76
BstAFI	CTTAAG	1 cut(s)	884
BstAUI	TGTACA	1 cut(s)	1093
BstC8I	GCNNGC	3 cut(s)	291, 408, 1027
BstDEI	CTNAG	4 cut(s)	681, 784, 891, 1008
BstDSI	CCRYGG	1 cut(s)	269
BstEII	GGTNACC	1 cut(s)	814
BstF5I	GGATG	4 cut(s)	469, 535, 604, 814
BstFNI	CGCG	2 cut(s)	271, 291
BstHHI	GCGC	2 cut(s)	291, 293
BstKTI	GATC	4 cut(s)	773, 898, 970, 1155
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	4 cut(s)	770, 895, 967, 1152
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 288
BstNI	CCWGG	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	814
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	2 cut(s)	271, 291
BstV1I	GCAGC	3 cut(s)	190, 610, 860
BstV2I	GAAGAC	2 cut(s)	118, 404
BstX2I	RGATCY	1 cut(s)	1152
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	1152
Bsu15I	ATCGAT	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	969
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	469, 535, 604, 814
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	206, 306, 644
Cac8I	GCNNGC	3 cut(s)	291, 408, 1027
CfoI	GCGC	2 cut(s)	291, 293
Cfr13I	GGNCC	2 cut(s)	481, 800
Cfr42I	CCGCGG	1 cut(s)	272
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	1094
CviAII	CATG	2 cut(s)	256, 1034
CviQI	GTAC	1 cut(s)	1094
DdeI	CTNAG	4 cut(s)	681, 784, 891, 1008
DpnI	GATC	4 cut(s)	772, 897, 969, 1154
DpnII	GATC	4 cut(s)	770, 895, 967, 1152
DriI	GACNNNNNGTC	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	594
Eco47I	GGWCC	2 cut(s)	481, 800
Eco88I	CYCGRG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	814
EcoO65I	GGTNACC	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	259, 1037
FaqI	GGGAC	3 cut(s)	247, 352, 617
FatI	CATG	2 cut(s)	255, 1033
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	48, 204, 269, 624, 849
FokI	GGATG	4 cut(s)	476, 522, 611, 821
Fsp4HI	GCNGC	5 cut(s)	48, 204, 269, 624, 849
GlaI	GCGC	2 cut(s)	290, 292
GluI	GCNGC	5 cut(s)	48, 204, 269, 624, 849
GsuI	CTGGAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	2 cut(s)	291, 293
Hin1II	CATG	2 cut(s)	259, 1037
Hin6I	GCGC	2 cut(s)	289, 291
HinP1I	GCGC	2 cut(s)	289, 291
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	2 cut(s)	320, 437
HinfI	GANTC	4 cut(s)	251, 497, 840, 1004
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	4 cut(s)	46, 152, 808, 943
Hpy166II	GTNNAC	5 cut(s)	8, 54, 511, 571, 644
Hpy188I	TCNGA	3 cut(s)	579, 900, 1009
Hpy188III	TCNNGA	3 cut(s)	461, 687, 1156
Hpy8I	GTNNAC	5 cut(s)	8, 54, 511, 571, 644
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	5 cut(s)	422, 495, 533, 955, 1046
HpyCH4III	ACNGT	3 cut(s)	35, 981, 1110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 288
HpyF3I	CTNAG	4 cut(s)	681, 784, 891, 1008
Hsp92II	CATG	2 cut(s)	259, 1037
HspAI	GCGC	2 cut(s)	289, 291
KspI	CCGCGG	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	770, 895, 967, 1152
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	3 cut(s)	190, 610, 860
LweI	GCATC	4 cut(s)	169, 190, 398, 544
MaeIII	GTNAC	1 cut(s)	814
MalI	GATC	4 cut(s)	772, 897, 969, 1154
MboI	GATC	4 cut(s)	770, 895, 967, 1152
MfeI	CAATTG	2 cut(s)	657, 1019
MflI	RGATCY	1 cut(s)	1152
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	8 cut(s)	363, 541, 603, 657, 714, 941, 1019, 1187
MmeI	TCCRAC	1 cut(s)	459
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	728, 885
MspA1I	CMGCKG	1 cut(s)	271
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	44
MunI	CAATTG	2 cut(s)	657, 1019
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	44
MvnI	CGCG	2 cut(s)	271, 291
MwoI	GCNNNNNNNGC	2 cut(s)	47, 288
NdeII	GATC	4 cut(s)	770, 895, 967, 1152
NlaIII	CATG	2 cut(s)	259, 1037
NlaIV	GGNNCC	3 cut(s)	313, 483, 592
NmuCI	GTSAC	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	283
PauI	GCGCGC	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	251, 497, 840, 1004
PkrI	GCNGC	5 cut(s)	49, 205, 270, 625, 850
PsiI	TTATAA	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	42
PspEI	GGTNACC	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	313, 483, 592
PspPI	GGNCC	2 cut(s)	481, 800
PspXI	VCTCGAGB	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	1152
PteI	GCGCGC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	1095
RsaNI	GTAC	1 cut(s)	1094
SacII	CCGCGG	1 cut(s)	272
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	728, 885
SatI	GCNGC	5 cut(s)	48, 204, 269, 624, 849
Sau3AI	GATC	4 cut(s)	770, 895, 967, 1152
Sau96I	GGNCC	2 cut(s)	481, 800
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	4 cut(s)	169, 190, 398, 544
Sfr274I	CTCGAG	1 cut(s)	283
Sfr303I	CCGCGG	1 cut(s)	272
SgrBI	CCGCGG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	481, 800
SlaI	CTCGAG	1 cut(s)	283
SmlI	CTYRAG	5 cut(s)	283, 738, 835, 884, 1156
SmoI	CTYRAG	5 cut(s)	283, 738, 835, 884, 1156
Sse9I	AATT	8 cut(s)	363, 541, 603, 657, 714, 941, 1019, 1187
SsiI	CCGC	3 cut(s)	47, 269, 271
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	35, 981, 1110
TaqI	TCGA	4 cut(s)	284, 500, 570, 856
TasI	AATT	8 cut(s)	363, 541, 603, 657, 714, 941, 1019, 1187
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	2 cut(s)	50, 271
TfiI	GAWTC	4 cut(s)	251, 497, 840, 1004
Tru1I	TTAA	2 cut(s)	728, 885
Tru9I	TTAA	2 cut(s)	728, 885
TscAI	CASTG	3 cut(s)	213, 313, 644
TseFI	GTSAC	1 cut(s)	814
TseI	GCWGC	3 cut(s)	203, 623, 848
Tsp45I	GTSAC	1 cut(s)	814
TspDTI	ATGAA	3 cut(s)	707, 714, 971
TspGWI	ACGGA	2 cut(s)	724, 910
TspRI	CASTG	3 cut(s)	213, 313, 644
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	2 cut(s)	481, 800
XapI	RAATTY	1 cut(s)	714
XhoI	CTCGAG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.