Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0006670

Physical Location & Seq

Genomic Coordinates Reverse (-)

89308 .. 90086

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgagctcgttcgcttctggccatggttgtcatccatggcatcgccgacgaagaacatctccgacgtcagaagctctccctcgaaggcaaccgacggttgcacagggaacctcagcgctggccggacgatctcgacagagagaagccttgttgtggatcggagtgaaacgagacgacatcgtttcaccacctcctcctctttctcccgcgtttctcttatctcgacgcctatccaaagcagatctaacgggacctcgtcgttcgttcgatatatgtcgcccgccaaaattcaccactgcagctgaatgtgccacactggattatgatgataatggcgatgctaaatcaagagagaaagatgttgcactgcatttgcctctcccaccgctttctggcgatttcgggcacgaatctatgttgtccttgccgcggttttttcactcaaggcgtgcacctgtgatctccactggttccttgaagcttgatatagctttcgggactggaggattaccaaacgtaataattggctacagaagtgtaggtctttgcattcagaccttctgtactaggatgagaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008094 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 RecA

Protein Analysis

193

Amino Acids

21.23

Weight (kDa)

10.39

Isoelectric Point (pI)

74.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10140
fragaria_vesca	FvH4_6g24630 FvH4_6g24630 FvH4_6g24630 FvH4_6g24630
malus_domestica	MD08G1164600.v1.1
prunus_persica	Prupe.7G052200_v2.0.a1
pyrus_communis	pycom12654g00020
rosa_chinensis	RchiOBHm_Chr3g0483971
rosa_laevigata	RLG00000015036 RLG00000023245 RLG00000030551 RLG00000032361
rosa_multiflora	Rmu_sc0001190.1_g000001 Rmu_sc0001527.1_g000019 Rmu_sc0003477.1_g000015 Rmu_sc0020880.1_g000007 Rmu_ssc0000295.1_g000053
rosa_roxburghii	Rroxscaffold_6G00397920
rosa_rugosa	Rorug03G0209800
rosa_samantha	Rh3AG258000 Rh3BG295100 Rh3CG292500 Rh3DG288200 Rh6AG313300
rosa_wichuraiana	Rw6G027080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccII	CGCG	2 cut(s)	209, 430
AciI	CCGC	5 cut(s)	207, 281, 386, 428, 430
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	2 cut(s)	19, 120
AcsI	RAATTY	1 cut(s)	287
AcyI	GRCGYC	2 cut(s)	65, 226
AfaI	GTAC	1 cut(s)	565
AfeI	AGCGCT	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	153, 392, 429
AgsI	TTSAA	1 cut(s)	478
AluBI	AGCT	5 cut(s)	6, 74, 302, 481, 491
AluI	AGCT	5 cut(s)	6, 74, 302, 481, 491
Alw21I	GWGCWC	2 cut(s)	8, 454
Alw26I	GTCTC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	117
AoxI	GGCC	2 cut(s)	19, 120
ApaLI	GTGCAC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	177, 283
AvaII	GGWCC	1 cut(s)	251
BaeGI	GKGCMC	2 cut(s)	408, 454
BalI	TGGCCA	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	8, 454
BbvCI	CCTCAGC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	567, 580
BfmI	CTRYAG	2 cut(s)	297, 529
BfoI	RGCGCY	1 cut(s)	119
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	2 cut(s)	300, 428
BlsI	GCNGC	2 cut(s)	301, 429
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	109, 252, 472
BmsI	GCATC	2 cut(s)	49, 328
BpmI	CTGGAG	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	427
BsaHI	GRCGYC	2 cut(s)	65, 226
BsaJI	CCNNGG	3 cut(s)	22, 35, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 392, 429
Bse1I	ACTGG	3 cut(s)	321, 472, 505
BseDI	CCNNGG	3 cut(s)	22, 35, 428
BseGI	GGATG	2 cut(s)	31, 576
BseLI	CCNNNNNNNGG	3 cut(s)	153, 392, 429
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	3 cut(s)	321, 472, 505
BseRI	GAGGAG	2 cut(s)	183, 186
BseSI	GKGCMC	2 cut(s)	408, 454
BseXI	GCAGC	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	209, 430
BshFI	GGCC	2 cut(s)	21, 122
BsiHKAI	GWGCWC	2 cut(s)	8, 454
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	2 cut(s)	264, 511
BslI	CCNNNNNNNGG	3 cut(s)	153, 392, 429
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	264, 511
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	21, 122
Bsp1286I	GDGCHC	3 cut(s)	8, 408, 454
Bsp143I	GATC	4 cut(s)	128, 156, 241, 459
Bsp19I	CCATGG	2 cut(s)	22, 35
BspACI	CCGC	5 cut(s)	207, 281, 386, 428, 430
BspANI	GGCC	2 cut(s)	21, 122
BspCNI	CTCAG	1 cut(s)	125
BspFNI	CGCG	2 cut(s)	209, 430
BspLI	GGNNCC	3 cut(s)	109, 252, 472
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	321, 472, 505
BssECI	CCNNGG	3 cut(s)	22, 35, 428
BssMI	GATC	4 cut(s)	128, 156, 241, 459
BssNI	GRCGYC	2 cut(s)	65, 226
BssT1I	CCWWGG	2 cut(s)	22, 35
Bst4CI	ACNGT	1 cut(s)	97
BstACI	GRCGYC	2 cut(s)	65, 226
BstC8I	GCNNGC	3 cut(s)	120, 281, 450
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	3 cut(s)	22, 35, 428
BstF5I	GGATG	2 cut(s)	31, 576
BstFNI	CGCG	2 cut(s)	209, 430
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	118
BstKTI	GATC	4 cut(s)	131, 159, 244, 462
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	4 cut(s)	128, 156, 241, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	297, 529
BstSLI	GKGCMC	2 cut(s)	408, 454
BstUI	CGCG	2 cut(s)	209, 430
BstV1I	GCAGC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	21, 122
BtgI	CCRYGG	3 cut(s)	22, 35, 428
BtgZI	GCGATG	2 cut(s)	26, 351
BtsCI	GGATG	2 cut(s)	31, 576
BtsI	GCAGTG	2 cut(s)	294, 365
BtsIMutI	CAGTG	4 cut(s)	294, 314, 365, 465
Cac8I	GCNNGC	3 cut(s)	120, 281, 450
CfoI	GCGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	2 cut(s)	23, 36
CviJI	RGCY	9 cut(s)	6, 21, 74, 122, 146, 302, 481, 491, 528
CviKI_1	RGCY	9 cut(s)	6, 21, 74, 122, 146, 302, 481, 491, 528
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	4 cut(s)	130, 158, 243, 461
DpnII	GATC	4 cut(s)	128, 156, 241, 459
EaeI	YGGCCR	2 cut(s)	19, 120
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	22, 35
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	251
Eco47III	AGCGCT	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	6
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	22, 35
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	22, 35
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	2 cut(s)	26, 39
FaiI	YATR	7 cut(s)	24, 37, 272, 274, 324, 416, 488
FaqI	GGGAC	2 cut(s)	264, 511
FatI	CATG	2 cut(s)	22, 35
FauI	CCCGC	2 cut(s)	214, 288
Fnu4HI	GCNGC	2 cut(s)	300, 428
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	300, 428
FspBI	CTAG	2 cut(s)	567, 580
GlaI	GCGC	1 cut(s)	117
GluI	GCNGC	2 cut(s)	300, 428
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	21, 122
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	65, 226
Hin1II	CATG	2 cut(s)	26, 39
Hin6I	GCGC	1 cut(s)	116
HinP1I	GCGC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	177, 283
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	63, 70, 161, 555
Hpy188III	TCNNGA	4 cut(s)	132, 222, 348, 496
Hpy8I	GTNNAC	1 cut(s)	452
Hpy99I	CGWCG	5 cut(s)	51, 67, 97, 228, 261
HpyAV	CCTTC	2 cut(s)	78, 568
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	2 cut(s)	65, 516
HpyCH4V	TGCA	6 cut(s)	101, 299, 365, 370, 452, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	112
HpySE526I	ACGT	2 cut(s)	65, 516
Hsp92I	GRCGYC	2 cut(s)	65, 226
Hsp92II	CATG	2 cut(s)	26, 39
HspAI	GCGC	1 cut(s)	116
KspI	CCGCGG	1 cut(s)	431
Kzo9I	GATC	4 cut(s)	128, 156, 241, 459
LpnPI	CCDG	9 cut(s)	3, 89, 104, 136, 302, 378, 453, 468, 486
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	49, 328
MaeI	CTAG	2 cut(s)	567, 580
MaeII	ACGT	2 cut(s)	65, 516
MalI	GATC	4 cut(s)	130, 158, 243, 461
MboI	GATC	4 cut(s)	128, 156, 241, 459
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	3 cut(s)	8, 408, 454
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	2 cut(s)	287, 522
MluNI	TGGCCA	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	8 cut(s)	90, 121, 201, 204, 207, 264, 387, 497
Mox20I	TGGCCA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	21
MspA1I	CMGCKG	2 cut(s)	302, 430
MspI	CCGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	549
MvnI	CGCG	2 cut(s)	209, 430
MwoI	GCNNNNNNNGC	1 cut(s)	308
NcoI	CCATGG	2 cut(s)	22, 35
NdeII	GATC	4 cut(s)	128, 156, 241, 459
NlaIII	CATG	2 cut(s)	26, 39
NlaIV	GGNNCC	3 cut(s)	109, 252, 472
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	410
PflFI	GACNNNGTC	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	301, 429
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	3 cut(s)	109, 252, 472
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	8
SacII	CCGCGG	1 cut(s)	431
SatI	GCNGC	2 cut(s)	300, 428
Sau3AI	GATC	4 cut(s)	128, 156, 241, 459
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	3 cut(s)	8, 408, 454
SfaNI	GCATC	2 cut(s)	49, 328
SfcI	CTRYAG	2 cut(s)	297, 529
Sfr303I	CCGCGG	1 cut(s)	431
SgrBI	CCGCGG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	2 cut(s)	287, 522
SsiI	CCGC	5 cut(s)	207, 281, 386, 428, 430
SspMI	CTAG	2 cut(s)	567, 580
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	2 cut(s)	22, 35
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	2 cut(s)	68, 519
TaqI	TCGA	4 cut(s)	82, 133, 223, 267
TasI	AATT	2 cut(s)	287, 522
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	410
TscAI	CASTG	4 cut(s)	301, 321, 372, 472
TseI	GCWGC	1 cut(s)	299
TspRI	CASTG	4 cut(s)	301, 321, 372, 472
Tth111I	GACNNNGTC	1 cut(s)	255
VneI	GTGCAC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	287
XspI	CTAG	2 cut(s)	567, 580
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.