AT3G10470

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016590
Physical Location & Seq
Forward (+)
3260141 .. 3261854
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10470.1

Sequence Viewer

Length: 1197 bp
ATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAATCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCTCAGTCCCCAATCCCTTTCTCTATCATTCCTCCTATGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCTACTAGTCTTGTTTCCAAGGAGAAGAGTCTCAATGATGAAATCAACAACAATAACATCAAGAATAATAACAATACTTTGATCAATGGTGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAACAATGCCACATTAAAGGCCACGGCTGACGAAGAAGATCAAGATATGGCTAATTGTTTGATCCTCCTCGCCCAAGGTCACTCTCTTCCCCACCTCCAACCGCAACCGCACCCCCAACAACAAACAAGACAGCTTATGATGAGTTACCAAGATTCCGGTAACAACAACAACAATGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAACGGGACCACAACGAACGGTGGTGGAGGCAGAGCCGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTCCAAGCTCTTGGTGGGCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCTATGGGTCTTCACTCTAACCATGACCACAAGAAGTCTAACTACGATGACGCCGTTTCTCTCCATCTCAACAACGTTCTCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGTATACGGCAAAGGTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTAGCCGCAGCAGCCGCCTCTACCGCCACCGTATCGGTTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCGCCAATGTCGTTTGATCAGATGTCGGAGGGTCCAATTCAGGCTCCCGTTAAGAGAGCGAGGAGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAACGGATTAAGCTTTGCTTCAAAGCAAGAACACGAACAAGAACATGAACAAACACAACAGAAGAAACAGAGAGAAGAACAAAAGTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTGGATTGCCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

398

Amino Acids

42.99

Weight (kDa)

7.74

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 181 - 207 2.3e-11 C2H2-type zinc finger
zf-C2H2_6 PF13912 260 - 285 1.2e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10470 AT5G04390
fragaria_vesca FvH4_7g18360
malus_domestica MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica Prupe.2G205700_v2.0.a1
pyrus_communis pycom07g16190
rosa_chinensis RchiOBHm_Chr1g0362171
rosa_laevigata RLG00000027670
rosa_rugosa Rorug01G0294800
rosa_samantha Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana Rw1G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 574
Acc36I ACCTGC 1 cut(s) 1048
AccI GTMKAC 2 cut(s) 152, 753
AccII CGCG 1 cut(s) 1007
AclI AACGTT 1 cut(s) 702
AclWI GGATC 2 cut(s) 43, 331
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 678, 844
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 1 cut(s) 1086
AhlI ACTAGT 1 cut(s) 155
AluBI AGCT 4 cut(s) 11, 409, 587, 1077
AluI AGCT 4 cut(s) 11, 409, 587, 1077
Alw26I GTCTC 4 cut(s) 185, 476, 835, 1155
AlwI GGATC 2 cut(s) 43, 331
AoxI GGCC 2 cut(s) 294, 903
ApeKI GCWGC 5 cut(s) 8, 11, 465, 869, 872
ApoI RAATTY 1 cut(s) 806
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 3 cut(s) 501, 778, 971
AsuC2I CCSGG 2 cut(s) 817, 1046
AsuHPI GGTGA 1 cut(s) 700
AvaII GGWCC 3 cut(s) 501, 778, 971
BarI GAAGNNNNNNTAC 2 cut(s) 653, 685
BbsI GAAGAC 3 cut(s) 114, 629, 1155
BbvI GCAGC 4 cut(s) 20, 477, 881, 884
BccI CCATC 1 cut(s) 699
BceAI ACGGC 4 cut(s) 315, 665, 772, 942
BclI TGATCA 2 cut(s) 231, 955
BcnI CCSGG 2 cut(s) 817, 1046
BcoDI GTCTC 4 cut(s) 185, 476, 835, 1155
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 4 cut(s) 33, 156, 462, 479
BfuAI ACCTGC 1 cut(s) 1048
BglI GCCNNNNNGGC 1 cut(s) 911
BglII AGATCT 2 cut(s) 458, 1027
Bme1390I CCNGG 2 cut(s) 817, 1046
Bme18I GGWCC 3 cut(s) 501, 778, 971
BmgT120I GGNCC 3 cut(s) 501, 778, 971
BmiI GGNNCC 4 cut(s) 502, 802, 972, 984
BmrFI CCNGG 2 cut(s) 817, 1046
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 3 cut(s) 114, 629, 1155
BpuMI CCSGG 2 cut(s) 817, 1046
BsaBI GATNNNNATC 3 cut(s) 1026, 1032, 1056
BsaHI GRCGYC 2 cut(s) 678, 844
BsaJI CCNNGG 4 cut(s) 168, 297, 349, 1044
BsaWI WCCGGW 3 cut(s) 133, 431, 564
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 547
Bse8I GATNNNNATC 3 cut(s) 1026, 1032, 1056
BseDI CCNNGG 4 cut(s) 168, 297, 349, 1044
BseGI GGATG 2 cut(s) 142, 812
BseJI GATNNNNATC 3 cut(s) 1026, 1032, 1056
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 2 cut(s) 332, 1015
BseXI GCAGC 4 cut(s) 20, 477, 881, 884
BsgI GTGCAG 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 1007
BshFI GGCC 2 cut(s) 296, 905
BsiSI CCGG 7 cut(s) 134, 432, 531, 565, 816, 911, 1046
BslFI GGGAC 2 cut(s) 73, 514
BsmAI GTCTC 4 cut(s) 185, 476, 835, 1155
BsmBI CGTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 73, 514
BsnI GGCC 2 cut(s) 296, 905
Bsp143I GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
BspANI GGCC 2 cut(s) 296, 905
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 1007
BspLI GGNNCC 4 cut(s) 502, 802, 972, 984
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 2 cut(s) 43, 331
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 168, 297, 349, 1044
BssMI GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
BssNAI GTATAC 1 cut(s) 754
BssNI GRCGYC 2 cut(s) 678, 844
BssT1I CCWWGG 2 cut(s) 168, 349
Bst1107I GTATAC 1 cut(s) 754
Bst4CI ACNGT 2 cut(s) 515, 892
Bst6I CTCTTC 4 cut(s) 141, 170, 268, 366
BstACI GRCGYC 2 cut(s) 678, 844
BstC8I GCNNGC 2 cut(s) 607, 822
BstDEI CTNAG 2 cut(s) 69, 84
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 2 cut(s) 142, 812
BstFNI CGCG 1 cut(s) 1007
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 8 cut(s) 51, 234, 316, 339, 461, 743, 958, 1030
BstMAI GTCTC 4 cut(s) 185, 476, 835, 1155
BstMBI GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
BstMWI GCNNNNNNNGC 9 cut(s) 17, 26, 863, 872, 875, 884, 911, 926, 1004
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 2 cut(s) 815, 1044
BstUI CGCG 1 cut(s) 1007
BstV1I GCAGC 4 cut(s) 20, 477, 881, 884
BstV2I GAAGAC 3 cut(s) 114, 629, 1155
BstX2I RGATCY 2 cut(s) 458, 1027
BstXI CCANNNNNNTGG 2 cut(s) 590, 788
BstYI RGATCY 2 cut(s) 458, 1027
BstZ17I GTATAC 1 cut(s) 754
BsuRI GGCC 2 cut(s) 296, 905
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 142, 812
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 554, 864
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 2 cut(s) 607, 822
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 501, 778, 971
CseI GACGC 2 cut(s) 686, 852
CviAII CATG 6 cut(s) 128, 558, 650, 782, 838, 1109
DdeI CTNAG 2 cut(s) 69, 84
DpnI GATC 8 cut(s) 50, 233, 315, 338, 460, 742, 957, 1029
DpnII GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
DrdI GACNNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 903
Eam1104I CTCTTC 4 cut(s) 141, 170, 268, 366
EarI CTCTTC 4 cut(s) 141, 170, 268, 366
Eco130I CCWWGG 2 cut(s) 168, 349
Eco47I GGWCC 3 cut(s) 501, 778, 971
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 806
EcoT14I CCWWGG 2 cut(s) 168, 349
ErhI CCWWGG 2 cut(s) 168, 349
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 6 cut(s) 131, 561, 653, 785, 841, 1112
FalI AAGNNNNNCTT 2 cut(s) 1066, 1098
FaqI GGGAC 2 cut(s) 73, 514
FatI CATG 6 cut(s) 127, 557, 649, 781, 837, 1108
FbaI TGATCA 2 cut(s) 231, 955
FblI GTMKAC 2 cut(s) 152, 753
FokI GGATG 2 cut(s) 149, 799
FspBI CTAG 4 cut(s) 33, 156, 462, 479
GlaI GCGC 1 cut(s) 1006
HaeIII GGCC 2 cut(s) 296, 905
HapII CCGG 7 cut(s) 134, 432, 531, 565, 816, 911, 1046
HgaI GACGC 2 cut(s) 686, 852
HhaI GCGC 1 cut(s) 1007
Hin1I GRCGYC 2 cut(s) 678, 844
Hin1II CATG 6 cut(s) 131, 561, 653, 785, 841, 1112
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 5 cut(s) 149, 178, 428, 1033, 1057
HpaII CCGG 7 cut(s) 134, 432, 531, 565, 816, 911, 1046
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 4 cut(s) 153, 544, 754, 1066
Hpy188I TCNGA 3 cut(s) 960, 967, 1032
Hpy188III TCNNGA 3 cut(s) 211, 317, 479
Hpy8I GTNNAC 4 cut(s) 153, 544, 754, 1066
HpyCH4III ACNGT 2 cut(s) 515, 892
HpyCH4IV ACGT 2 cut(s) 79, 702
HpyCH4V TGCA 3 cut(s) 552, 857, 920
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 26, 863, 872, 875, 884, 911, 926, 1004
HpyF3I CTNAG 2 cut(s) 69, 84
HpySE526I ACGT 2 cut(s) 79, 702
Hsp92I GRCGYC 2 cut(s) 678, 844
Hsp92II CATG 6 cut(s) 131, 561, 653, 785, 841, 1112
HspAI GCGC 1 cut(s) 1005
Ksp22I TGATCA 2 cut(s) 231, 955
Kzo9I GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
LmnI GCTCC 5 cut(s) 37, 800, 988, 1002, 1174
Lsp1109I GCAGC 4 cut(s) 20, 477, 881, 884
LweI GCATC 1 cut(s) 127
MaeI CTAG 4 cut(s) 33, 156, 462, 479
MaeII ACGT 2 cut(s) 79, 702
MaeIII GTNAC 8 cut(s) 241, 353, 419, 434, 533, 560, 731, 833
MalI GATC 8 cut(s) 50, 233, 315, 338, 460, 742, 957, 1029
MboI GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
MflI RGATCY 2 cut(s) 458, 1027
MluCI AATT 3 cut(s) 328, 806, 975
MlyI GAGTC 2 cut(s) 158, 187
MmeI TCCRAC 3 cut(s) 297, 397, 945
MseI TTAA 4 cut(s) 54, 290, 990, 1073
MslI CAYNNNNRTG 2 cut(s) 786, 852
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 7 cut(s) 134, 432, 531, 565, 816, 911, 1046
MspR9I CCNGG 2 cut(s) 817, 1046
MvnI CGCG 1 cut(s) 1007
MwoI GCNNNNNNNGC 9 cut(s) 17, 26, 863, 872, 875, 884, 911, 926, 1004
NciI CCSGG 2 cut(s) 817, 1046
NdeII GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
NlaIII CATG 6 cut(s) 131, 561, 653, 785, 841, 1112
NlaIV GGNNCC 4 cut(s) 502, 802, 972, 984
NmuCI GTSAC 3 cut(s) 353, 560, 833
NspI RCATGY 1 cut(s) 561
PciI ACATGT 1 cut(s) 557
PcsI WCGNNNNNNNCGW 2 cut(s) 678, 947
PfeI GAWTC 3 cut(s) 428, 1033, 1057
PleI GAGTC 2 cut(s) 157, 186
PpsI GAGTC 2 cut(s) 157, 186
PscI ACATGT 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 702
PspN4I GGNNCC 4 cut(s) 502, 802, 972, 984
PspPI GGNCC 3 cut(s) 501, 778, 971
PsuI RGATCY 2 cut(s) 458, 1027
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 786, 852
SaqAI TTAA 4 cut(s) 54, 290, 990, 1073
Sau3AI GATC 8 cut(s) 48, 231, 313, 336, 458, 740, 955, 1027
Sau96I GGNCC 3 cut(s) 501, 778, 971
SchI GAGTC 2 cut(s) 158, 187
ScrFI CCNGG 2 cut(s) 817, 1046
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 3 cut(s) 501, 778, 971
SmiMI CAYNNNNRTG 2 cut(s) 786, 852
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 3 cut(s) 328, 806, 975
SspMI CTAG 4 cut(s) 33, 156, 462, 479
StyD4I CCNGG 2 cut(s) 815, 1044
StyI CCWWGG 2 cut(s) 168, 349
TaaI ACNGT 2 cut(s) 515, 892
TaiI ACGT 2 cut(s) 82, 705
TasI AATT 3 cut(s) 328, 806, 975
TauI GCSGC 6 cut(s) 32, 76, 629, 869, 878, 905
TfiI GAWTC 3 cut(s) 428, 1033, 1057
Tru1I TTAA 4 cut(s) 54, 290, 990, 1073
Tru9I TTAA 4 cut(s) 54, 290, 990, 1073
TscAI CASTG 2 cut(s) 554, 864
TseFI GTSAC 3 cut(s) 353, 560, 833
TseI GCWGC 5 cut(s) 8, 11, 465, 869, 872
Tsp45I GTSAC 3 cut(s) 353, 560, 833
TspDTI ATGAA 7 cut(s) 144, 204, 240, 255, 480, 798, 1125
TspGWI ACGGA 3 cut(s) 79, 564, 1083
TspRI CASTG 2 cut(s) 554, 864
VpaK11BI GGWCC 3 cut(s) 501, 778, 971
XapI RAATTY 1 cut(s) 806
XbaI TCTAGA 1 cut(s) 478
XceI RCATGY 1 cut(s) 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 590
XmiI GTMKAC 2 cut(s) 152, 753
XspI CTAG 4 cut(s) 33, 156, 462, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.