Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

54449742 .. 54450868

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAGAAGCCGATCATCAACATGATCATCAAGAGGAAGAAGTCATCATAGGCTGCAACGAACAACACAACAACAACACCGCCACCACCACCACCAACAACAACATTATCATCAAGGGCAAGCGCACAAAGCGCCTTAGGCCTCAATCCCCCATCCCTTTCGCCGTCCCCACGAACTCGTCCACCGCGGATGGCGGTGGCCAAGGTGGCGGTGGTGGTGAGTGTAACAACACCACCAACTCCACCGAGGAAGAGGAGGACATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTTCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACACCCCTCGCCGCTGCTGTGGGGCCCGCCAAGATGGCTGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGTAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGTTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCGCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAACCACAACAAAACCAACACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGACGATCATCATCATCGAGATCAATCCAAATTTGTGTTTGCACCCAAACAGCAGCAGCAGCAACAACCGCAGCAGCCTCCGCAGCAACAGCAACAAGAAAGGTTAAGAATTTTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

364

Amino Acids

39.6

Weight (kDa)

6.99

Isoelectric Point (pI)

73.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	153 - 179	7.2e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	241 - 267	1.6e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	786, 796
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	1 cut(s)	188
AclWI	GGATC	2 cut(s)	271, 948
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	992, 1071
AcyI	GRCGYC	2 cut(s)	787, 797
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	4 cut(s)	301, 505, 741, 806
AflIII	ACRYGT	2 cut(s)	473, 642
AgsI	TTSAA	1 cut(s)	619
AjiI	CACGTC	2 cut(s)	474, 645
AjnI	CCWGG	2 cut(s)	378, 819
AluBI	AGCT	5 cut(s)	325, 443, 815, 833, 866
AluI	AGCT	5 cut(s)	325, 443, 815, 833, 866
Alw21I	GWGCWC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	271, 948
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	7 cut(s)	140, 199, 292, 410, 428, 765, 775
ApaI	GGGCCC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	992, 1071
AspLEI	GCGC	4 cut(s)	126, 135, 789, 799
AspS9I	GGNCC	5 cut(s)	305, 410, 411, 428, 809
AsuC2I	CCSGG	4 cut(s)	301, 302, 518, 794
AsuHPI	GGTGA	3 cut(s)	230, 506, 745
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	2 cut(s)	305, 809
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	786, 796
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	609, 969
Bbv12I	GWGCWC	1 cut(s)	734
BccI	CCATC	4 cut(s)	161, 185, 415, 598
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	2 cut(s)	380, 821
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	4 cut(s)	301, 302, 518, 794
BfoI	RGCGCY	3 cut(s)	136, 790, 800
BglI	GCCNNNNNGGC	2 cut(s)	207, 422
Bme1390I	CCNGG	6 cut(s)	301, 302, 380, 518, 794, 821
Bme18I	GGWCC	2 cut(s)	305, 809
BmeT110I	CYCGRG	1 cut(s)	300
BmgBI	CACGTC	2 cut(s)	474, 645
BmgT120I	GGNCC	5 cut(s)	305, 410, 411, 428, 809
BmiI	GGNNCC	5 cut(s)	306, 411, 412, 788, 798
BmrFI	CCNGG	6 cut(s)	301, 302, 380, 518, 794, 821
BpiI	GAAGAC	2 cut(s)	609, 969
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	4 cut(s)	301, 302, 518, 794
BsaBI	GATNNNNATC	2 cut(s)	939, 972
BsaHI	GRCGYC	2 cut(s)	787, 797
BsaJI	CCNNGG	8 cut(s)	186, 202, 246, 300, 301, 768, 819, 858
BsaWI	WCCGGW	2 cut(s)	480, 758
BsaXI	ACNNNNNCTCC	4 cut(s)	632, 662, 820, 850
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 505, 741, 806
Bse118I	RCCGGY	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	137
Bse8I	GATNNNNATC	2 cut(s)	939, 972
BseBI	CCWGG	2 cut(s)	380, 821
BseDI	CCNNGG	8 cut(s)	186, 202, 246, 300, 301, 768, 819, 858
BseGI	GGATG	5 cut(s)	153, 196, 562, 601, 653
BseJI	GATNNNNATC	2 cut(s)	939, 972
BseLI	CCNNNNNNNGG	4 cut(s)	301, 505, 741, 806
BseRI	GAGGAG	4 cut(s)	269, 640, 825, 828
BseSI	GKGCMC	1 cut(s)	414
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	7 cut(s)	142, 201, 294, 412, 430, 767, 777
BshNI	GGYRCC	2 cut(s)	786, 796
BsiHKAI	GWGCWC	1 cut(s)	734
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	6 cut(s)	301, 431, 481, 517, 759, 793
BslFI	GGGAC	2 cut(s)	152, 301
BslI	CCNNNNNNNGG	4 cut(s)	301, 505, 741, 806
BsmFI	GGGAC	2 cut(s)	152, 301
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	7 cut(s)	142, 201, 294, 412, 430, 767, 777
BsoBI	CYCGRG	1 cut(s)	300
Bsp120I	GGGCCC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	414, 734
Bsp143I	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
BspANI	GGCC	7 cut(s)	142, 201, 294, 412, 430, 767, 777
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	5 cut(s)	306, 411, 412, 788, 798
BspPI	GGATC	2 cut(s)	271, 948
BspT107I	GGYRCC	2 cut(s)	786, 796
BsrFI	RCCGGY	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	8 cut(s)	186, 202, 246, 300, 301, 768, 819, 858
BssMI	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
BssNI	GRCGYC	2 cut(s)	787, 797
BssT1I	CCWWGG	3 cut(s)	202, 768, 858
Bst2UI	CCWGG	2 cut(s)	380, 821
Bst4CI	ACNGT	1 cut(s)	847
Bst6I	CTCTTC	2 cut(s)	246, 672
BstACI	GRCGYC	2 cut(s)	787, 797
BstC8I	GCNNGC	4 cut(s)	122, 414, 432, 445
BstDEI	CTNAG	2 cut(s)	137, 717
BstDSI	CCRYGG	1 cut(s)	186
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	5 cut(s)	153, 196, 562, 601, 653
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	3 cut(s)	136, 790, 800
BstHHI	GCGC	4 cut(s)	126, 135, 789, 799
BstKTI	GATC	7 cut(s)	16, 28, 279, 346, 943, 970, 985
BstMBI	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
BstNI	CCWGG	2 cut(s)	380, 821
BstNSI	RCATGY	1 cut(s)	925
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	6 cut(s)	299, 300, 378, 516, 792, 819
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	609, 969
BstX2I	RGATCY	1 cut(s)	940
BstYI	RGATCY	1 cut(s)	940
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	7 cut(s)	142, 201, 294, 412, 430, 767, 777
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	2 cut(s)	474, 645
BtsCI	GGATG	5 cut(s)	153, 196, 562, 601, 653
Cac8I	GCNNGC	4 cut(s)	122, 414, 432, 445
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	4 cut(s)	126, 135, 789, 799
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	5 cut(s)	305, 410, 411, 428, 809
Cfr42I	CCGCGG	1 cut(s)	189
Cfr9I	CCCGGG	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	7 cut(s)	23, 262, 625, 631, 725, 781, 922
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	2 cut(s)	137, 717
DinI	GGCGCC	2 cut(s)	788, 798
DpnI	GATC	7 cut(s)	15, 27, 278, 345, 942, 969, 984
DpnII	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	246, 672
EarI	CTCTTC	2 cut(s)	246, 672
EciI	GGCGGA	1 cut(s)	761
Eco130I	CCWWGG	3 cut(s)	202, 768, 858
Eco147I	AGGCCT	2 cut(s)	142, 767
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	305, 809
Eco81I	CCTNAGG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	300
Eco91I	GGTNACC	1 cut(s)	512
EcoO109I	RGGNCCY	2 cut(s)	305, 410
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	378, 819
EcoT14I	CCWWGG	3 cut(s)	202, 768, 858
EcoT38I	GRGCYC	1 cut(s)	414
EgeI	GGCGCC	2 cut(s)	788, 798
EheI	GGCGCC	2 cut(s)	788, 798
ErhI	CCWWGG	3 cut(s)	202, 768, 858
FaeI	CATG	7 cut(s)	26, 265, 628, 634, 728, 784, 925
FaqI	GGGAC	2 cut(s)	152, 301
FatI	CATG	7 cut(s)	22, 261, 624, 630, 724, 780, 921
FauI	CCCGC	3 cut(s)	421, 440, 734
FbaI	TGATCA	1 cut(s)	25
FokI	GGATG	5 cut(s)	140, 203, 569, 608, 640
FriOI	GRGCYC	1 cut(s)	414
GlaI	GCGC	4 cut(s)	125, 134, 788, 798
GsaI	CCCAGC	1 cut(s)	429
HaeII	RGCGCY	3 cut(s)	136, 790, 800
HaeIII	GGCC	7 cut(s)	142, 201, 294, 412, 430, 767, 777
HapII	CCGG	6 cut(s)	301, 431, 481, 517, 759, 793
HhaI	GCGC	4 cut(s)	126, 135, 789, 799
Hin1I	GRCGYC	2 cut(s)	787, 797
Hin1II	CATG	7 cut(s)	26, 265, 628, 634, 728, 784, 925
Hin6I	GCGC	4 cut(s)	124, 133, 787, 797
HinP1I	GCGC	4 cut(s)	124, 133, 787, 797
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	375, 523
HpaII	CCGG	6 cut(s)	301, 431, 481, 517, 759, 793
HphI	GGTGA	3 cut(s)	230, 506, 745
Hpy166II	GTNNAC	3 cut(s)	183, 753, 828
Hpy188I	TCNGA	2 cut(s)	372, 595
Hpy188III	TCNNGA	5 cut(s)	32, 619, 694, 725, 980
Hpy8I	GTNNAC	3 cut(s)	183, 753, 828
HpyAV	CCTTC	3 cut(s)	318, 501, 959
HpyCH4III	ACNGT	1 cut(s)	847
HpyCH4IV	ACGT	2 cut(s)	473, 644
HpyCH4V	TGCA	3 cut(s)	57, 468, 1004
HpyF3I	CTNAG	2 cut(s)	137, 717
HpySE526I	ACGT	2 cut(s)	473, 644
Hsp92I	GRCGYC	2 cut(s)	787, 797
Hsp92II	CATG	7 cut(s)	26, 265, 628, 634, 728, 784, 925
HspAI	GCGC	4 cut(s)	124, 133, 787, 797
KasI	GGCGCC	2 cut(s)	786, 796
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	189
Kzo9I	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
LmnI	GCTCC	3 cut(s)	737, 838, 871
MaeII	ACGT	2 cut(s)	473, 644
MaeIII	GTNAC	6 cut(s)	224, 476, 512, 524, 585, 677
MalI	GATC	7 cut(s)	15, 27, 278, 345, 942, 969, 984
MboI	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
MboII	GAAGA	8 cut(s)	17, 50, 263, 303, 611, 614, 659, 974
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	414, 734
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	5 cut(s)	268, 576, 611, 992, 1071
MluNI	TGGCCA	1 cut(s)	201
Mly113I	GGCGCC	2 cut(s)	787, 797
MlyI	GAGTC	1 cut(s)	532
MmeI	TCCRAC	3 cut(s)	350, 784, 866
Mox20I	TGGCCA	1 cut(s)	201
MroNI	GCCGGC	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	2 cut(s)	905, 1067
MslI	CAYNNNNRTG	2 cut(s)	21, 629
Msp20I	TGGCCA	1 cut(s)	201
MspA1I	CMGCKG	3 cut(s)	188, 401, 443
MspI	CCGG	6 cut(s)	301, 431, 481, 517, 759, 793
MspR9I	CCNGG	6 cut(s)	301, 302, 380, 518, 794, 821
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	2 cut(s)	380, 821
MvnI	CGCG	1 cut(s)	188
NaeI	GCCGGC	1 cut(s)	432
NarI	GGCGCC	2 cut(s)	787, 797
NciI	CCSGG	4 cut(s)	301, 302, 518, 794
NdeII	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
NgoMIV	GCCGGC	1 cut(s)	430
NlaIII	CATG	7 cut(s)	26, 265, 628, 634, 728, 784, 925
NlaIV	GGNNCC	5 cut(s)	306, 411, 412, 788, 798
NmuCI	GTSAC	2 cut(s)	512, 524
NspI	RCATGY	1 cut(s)	925
PagI	TCATGA	1 cut(s)	724
PceI	AGGCCT	2 cut(s)	142, 767
PctI	GAATGC	1 cut(s)	470
PdiI	GCCGGC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	378
PleI	GAGTC	1 cut(s)	531
PluTI	GGCGCC	2 cut(s)	790, 800
PpsI	GAGTC	1 cut(s)	531
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	378, 819
PspEI	GGTNACC	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	2 cut(s)	378, 819
PspN4I	GGNNCC	5 cut(s)	306, 411, 412, 788, 798
PspOMI	GGGCCC	1 cut(s)	410
PspPI	GGNCC	5 cut(s)	305, 410, 411, 428, 809
PspPPI	RGGWCCY	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	2 cut(s)	21, 629
SacII	CCGCGG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	905, 1067
Sau3AI	GATC	7 cut(s)	13, 25, 276, 343, 940, 967, 982
Sau96I	GGNCC	5 cut(s)	305, 410, 411, 428, 809
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	6 cut(s)	301, 302, 380, 518, 794, 821
SduI	GDGCHC	2 cut(s)	414, 734
SfoI	GGCGCC	2 cut(s)	788, 798
Sfr303I	CCGCGG	1 cut(s)	189
SgrBI	CCGCGG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	305, 809
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	21, 629
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	5 cut(s)	268, 576, 611, 992, 1071
SseBI	AGGCCT	2 cut(s)	142, 767
SspDI	GGCGCC	2 cut(s)	786, 796
StuI	AGGCCT	2 cut(s)	142, 767
StyD4I	CCNGG	6 cut(s)	299, 300, 378, 516, 792, 819
StyI	CCWWGG	3 cut(s)	202, 768, 858
TaaI	ACNGT	1 cut(s)	847
TaiI	ACGT	2 cut(s)	476, 647
TaqI	TCGA	1 cut(s)	979
TasI	AATT	5 cut(s)	268, 576, 611, 992, 1071
TauI	GCSGC	2 cut(s)	401, 440
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	905, 1067
Tru9I	TTAA	2 cut(s)	905, 1067
TseFI	GTSAC	2 cut(s)	512, 524
Tsp45I	GTSAC	2 cut(s)	512, 524
TspDTI	ATGAA	6 cut(s)	477, 612, 641, 647, 659, 713
TspMI	CCCGGG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	2 cut(s)	305, 809
XapI	RAATTY	2 cut(s)	992, 1071
XceI	RCATGY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 506
XmaI	CCCGGG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.