Rh1CG285700

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016590
Physical Location & Seq
Reverse (-)
55693349 .. 55694513
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG285700.1

Sequence Viewer

Length: 774 bp
ATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTTCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACACCCCTCGCCGCTGCTGTGGGGCCCGCCAAGATGGCGGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGTAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGTTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCGCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAACCACAACAAAACCAACACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGACGATCATCATCATCGAGATCAATCCAAATTTGGGTTTGTTGTTGGTCGTTTTCTAGTGGGAGAAATGTGA

Protein Analysis

257

Amino Acids

27.64

Weight (kDa)

9.28

Isoelectric Point (pI)

58.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 66 - 92 4.6e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 154 - 180 1e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10470 AT5G04390
fragaria_vesca FvH4_7g18360
malus_domestica MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica Prupe.2G205700_v2.0.a1
pyrus_communis pycom07g16190
rosa_chinensis RchiOBHm_Chr1g0362171
rosa_laevigata RLG00000027670
rosa_rugosa Rorug01G0294800
rosa_samantha Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana Rw1G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 525, 535
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 8 cut(s) 138, 153, 164, 177, 186, 480, 485, 608
AclWI GGATC 2 cut(s) 10, 687
AcsI RAATTY 1 cut(s) 731
AcyI GRCGYC 2 cut(s) 526, 536
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 5 cut(s) 40, 244, 480, 545, 735
AflIII ACRYGT 2 cut(s) 212, 381
AgsI TTSAA 1 cut(s) 358
AjiI CACGTC 2 cut(s) 213, 384
AjnI CCWGG 2 cut(s) 117, 558
AluBI AGCT 5 cut(s) 64, 182, 554, 572, 605
AluI AGCT 5 cut(s) 64, 182, 554, 572, 605
Alw21I GWGCWC 1 cut(s) 473
AlwI GGATC 2 cut(s) 10, 687
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 5 cut(s) 31, 149, 167, 504, 514
ApaI GGGCCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 140, 173, 179
ApoI RAATTY 1 cut(s) 731
AspLEI GCGC 2 cut(s) 528, 538
AspS9I GGNCC 5 cut(s) 44, 149, 150, 167, 548
AsuC2I CCSGG 4 cut(s) 40, 41, 257, 533
AsuHPI GGTGA 2 cut(s) 245, 484
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 44, 548
BaeGI GKGCMC 1 cut(s) 153
BanI GGYRCC 2 cut(s) 525, 535
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 348, 708
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 3 cut(s) 127, 160, 191
BccI CCATC 2 cut(s) 154, 337
BciT130I CCWGG 2 cut(s) 119, 560
BcnI CCSGG 4 cut(s) 40, 41, 257, 533
BfaI CTAG 1 cut(s) 758
BfoI RGCGCY 2 cut(s) 529, 539
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 5 cut(s) 138, 141, 174, 177, 180
BlsI GCNGC 5 cut(s) 139, 142, 175, 178, 181
Bme1390I CCNGG 6 cut(s) 40, 41, 119, 257, 533, 560
Bme18I GGWCC 2 cut(s) 44, 548
BmeT110I CYCGRG 1 cut(s) 39
BmgBI CACGTC 2 cut(s) 213, 384
BmgT120I GGNCC 5 cut(s) 44, 149, 150, 167, 548
BmiI GGNNCC 6 cut(s) 45, 150, 151, 168, 527, 537
BmrFI CCNGG 6 cut(s) 40, 41, 119, 257, 533, 560
BpiI GAAGAC 2 cut(s) 348, 708
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BpuEI CTTGAG 1 cut(s) 454
BpuMI CCSGG 4 cut(s) 40, 41, 257, 533
BsaBI GATNNNNATC 2 cut(s) 678, 711
BsaHI GRCGYC 2 cut(s) 526, 536
BsaJI CCNNGG 5 cut(s) 39, 40, 507, 558, 597
BsaWI WCCGGW 2 cut(s) 219, 497
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 559, 589
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 244, 480, 545, 735
Bse118I RCCGGY 1 cut(s) 169
Bse8I GATNNNNATC 2 cut(s) 678, 711
BseBI CCWGG 2 cut(s) 119, 560
BseDI CCNNGG 5 cut(s) 39, 40, 507, 558, 597
BseGI GGATG 3 cut(s) 301, 340, 392
BseJI GATNNNNATC 2 cut(s) 678, 711
BseLI CCNNNNNNNGG 5 cut(s) 40, 244, 480, 545, 735
BseRI GAGGAG 3 cut(s) 379, 564, 567
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 3 cut(s) 127, 160, 191
BshFI GGCC 5 cut(s) 33, 151, 169, 506, 516
BshNI GGYRCC 2 cut(s) 525, 535
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 6 cut(s) 40, 170, 220, 256, 498, 532
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 5 cut(s) 40, 244, 480, 545, 735
BsmFI GGGAC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 5 cut(s) 33, 151, 169, 506, 516
BsoBI CYCGRG 1 cut(s) 39
Bsp120I GGGCCC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 153, 473
Bsp143I GATC 5 cut(s) 15, 82, 679, 706, 721
BspACI CCGC 8 cut(s) 138, 153, 164, 177, 186, 480, 485, 608
BspANI GGCC 5 cut(s) 33, 151, 169, 506, 516
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 6 cut(s) 45, 150, 151, 168, 527, 537
BspPI GGATC 2 cut(s) 10, 687
BspT107I GGYRCC 2 cut(s) 525, 535
BsrFI RCCGGY 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 5 cut(s) 39, 40, 507, 558, 597
BssMI GATC 5 cut(s) 15, 82, 679, 706, 721
BssNI GRCGYC 2 cut(s) 526, 536
BssT1I CCWWGG 2 cut(s) 507, 597
Bst2UI CCWGG 2 cut(s) 119, 560
Bst4CI ACNGT 1 cut(s) 586
Bst6I CTCTTC 1 cut(s) 411
BstACI GRCGYC 2 cut(s) 526, 536
BstC8I GCNNGC 3 cut(s) 153, 171, 184
BstDEI CTNAG 1 cut(s) 456
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 3 cut(s) 301, 340, 392
BstH2I RGCGCY 2 cut(s) 529, 539
BstHHI GCGC 2 cut(s) 528, 538
BstKTI GATC 5 cut(s) 18, 85, 682, 709, 724
BstMBI GATC 5 cut(s) 15, 82, 679, 706, 721
BstMWI GCNNNNNNNGC 7 cut(s) 161, 170, 179, 477, 560, 569, 602
BstNI CCWGG 2 cut(s) 119, 560
BstNSI RCATGY 1 cut(s) 664
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 6 cut(s) 38, 39, 117, 255, 531, 558
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 127, 160, 191
BstV2I GAAGAC 2 cut(s) 348, 708
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 5 cut(s) 33, 151, 169, 506, 516
BtrI CACGTC 2 cut(s) 213, 384
BtsCI GGATG 3 cut(s) 301, 340, 392
Cac8I GCNNGC 3 cut(s) 153, 171, 184
CciI TCATGA 1 cut(s) 463
CfoI GCGC 2 cut(s) 528, 538
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 44, 149, 150, 167, 548
Cfr9I CCCGGG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 438
CviAII CATG 5 cut(s) 364, 370, 464, 520, 661
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 1 cut(s) 456
DinI GGCGCC 2 cut(s) 527, 537
DpnI GATC 5 cut(s) 17, 84, 681, 708, 723
DpnII GATC 5 cut(s) 15, 82, 679, 706, 721
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 2 cut(s) 507, 597
Eco147I AGGCCT 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 44, 548
Eco88I CYCGRG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 44, 149
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 117, 558
EcoT14I CCWWGG 2 cut(s) 507, 597
EcoT38I GRGCYC 1 cut(s) 153
EgeI GGCGCC 2 cut(s) 527, 537
EheI GGCGCC 2 cut(s) 527, 537
ErhI CCWWGG 2 cut(s) 507, 597
FaeI CATG 5 cut(s) 367, 373, 467, 523, 664
FaiI YATR 8 cut(s) 78, 195, 201, 365, 371, 465, 521, 662
FaqI GGGAC 1 cut(s) 40
FatI CATG 5 cut(s) 363, 369, 463, 519, 660
FauI CCCGC 4 cut(s) 157, 160, 179, 473
Fnu4HI GCNGC 5 cut(s) 138, 141, 174, 177, 180
FokI GGATG 3 cut(s) 308, 347, 379
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 138, 141, 174, 177, 180
FspBI CTAG 1 cut(s) 758
GlaI GCGC 2 cut(s) 527, 537
GluI GCNGC 5 cut(s) 138, 141, 174, 177, 180
HaeII RGCGCY 2 cut(s) 529, 539
HaeIII GGCC 5 cut(s) 33, 151, 169, 506, 516
HapII CCGG 6 cut(s) 40, 170, 220, 256, 498, 532
HhaI GCGC 2 cut(s) 528, 538
Hin1I GRCGYC 2 cut(s) 526, 536
Hin1II CATG 5 cut(s) 367, 373, 467, 523, 664
Hin6I GCGC 2 cut(s) 526, 536
HinP1I GCGC 2 cut(s) 526, 536
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 114, 262
HpaII CCGG 6 cut(s) 40, 170, 220, 256, 498, 532
HphI GGTGA 2 cut(s) 245, 484
Hpy166II GTNNAC 2 cut(s) 492, 567
Hpy188I TCNGA 2 cut(s) 111, 334
Hpy188III TCNNGA 4 cut(s) 358, 433, 464, 719
Hpy8I GTNNAC 2 cut(s) 492, 567
HpyAV CCTTC 3 cut(s) 57, 240, 698
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 2 cut(s) 212, 383
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 170, 179, 477, 560, 569, 602
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 2 cut(s) 212, 383
Hsp92I GRCGYC 2 cut(s) 526, 536
Hsp92II CATG 5 cut(s) 367, 373, 467, 523, 664
HspAI GCGC 2 cut(s) 526, 536
KasI GGCGCC 2 cut(s) 525, 535
KroI GCCGGC 1 cut(s) 169
KroNI GCCGGC 1 cut(s) 171
Kzo9I GATC 5 cut(s) 15, 82, 679, 706, 721
LmnI GCTCC 3 cut(s) 476, 577, 610
Lsp1109I GCAGC 3 cut(s) 127, 160, 191
MaeI CTAG 1 cut(s) 758
MaeII ACGT 2 cut(s) 212, 383
MaeIII GTNAC 5 cut(s) 215, 251, 263, 324, 416
MalI GATC 5 cut(s) 17, 84, 681, 708, 723
MboI GATC 5 cut(s) 15, 82, 679, 706, 721
MboII GAAGA 5 cut(s) 42, 350, 353, 398, 713
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 153, 473
MluCI AATT 4 cut(s) 7, 315, 350, 731
Mly113I GGCGCC 2 cut(s) 526, 536
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 3 cut(s) 89, 523, 605
MroNI GCCGGC 1 cut(s) 169
MseI TTAA 1 cut(s) 644
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 140, 182
MspI CCGG 6 cut(s) 40, 170, 220, 256, 498, 532
MspR9I CCNGG 6 cut(s) 40, 41, 119, 257, 533, 560
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 2 cut(s) 119, 560
MwoI GCNNNNNNNGC 7 cut(s) 161, 170, 179, 477, 560, 569, 602
NaeI GCCGGC 1 cut(s) 171
NarI GGCGCC 2 cut(s) 526, 536
NciI CCSGG 4 cut(s) 40, 41, 257, 533
NdeII GATC 5 cut(s) 15, 82, 679, 706, 721
NgoMIV GCCGGC 1 cut(s) 169
NlaIII CATG 5 cut(s) 367, 373, 467, 523, 664
NlaIV GGNNCC 6 cut(s) 45, 150, 151, 168, 527, 537
NmuCI GTSAC 2 cut(s) 251, 263
NspI RCATGY 1 cut(s) 664
PagI TCATGA 1 cut(s) 463
PceI AGGCCT 1 cut(s) 506
PctI GAATGC 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 114
PflMI CCANNNNNTGG 1 cut(s) 244
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 5 cut(s) 139, 142, 175, 178, 181
PleI GAGTC 1 cut(s) 270
PluTI GGCGCC 2 cut(s) 529, 539
PpsI GAGTC 1 cut(s) 270
PpuMI RGGWCCY 1 cut(s) 44
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 2 cut(s) 117, 558
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 2 cut(s) 117, 558
PspN4I GGNNCC 6 cut(s) 45, 150, 151, 168, 527, 537
PspOMI GGGCCC 1 cut(s) 149
PspPI GGNCC 5 cut(s) 44, 149, 150, 167, 548
PspPPI RGGWCCY 1 cut(s) 44
PsuI RGATCY 1 cut(s) 679
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 1 cut(s) 644
SatI GCNGC 5 cut(s) 138, 141, 174, 177, 180
Sau3AI GATC 5 cut(s) 15, 82, 679, 706, 721
Sau96I GGNCC 5 cut(s) 44, 149, 150, 167, 548
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 6 cut(s) 40, 41, 119, 257, 533, 560
SduI GDGCHC 2 cut(s) 153, 473
SfoI GGCGCC 2 cut(s) 527, 537
SinI GGWCC 2 cut(s) 44, 548
SmaI CCCGGG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 4 cut(s) 7, 315, 350, 731
SseBI AGGCCT 1 cut(s) 506
SsiI CCGC 8 cut(s) 138, 153, 164, 177, 186, 480, 485, 608
SspDI GGCGCC 2 cut(s) 525, 535
SspMI CTAG 1 cut(s) 758
StuI AGGCCT 1 cut(s) 506
StyD4I CCNGG 6 cut(s) 38, 39, 117, 255, 531, 558
StyI CCWWGG 2 cut(s) 507, 597
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 2 cut(s) 215, 386
TaqI TCGA 1 cut(s) 718
TasI AATT 4 cut(s) 7, 315, 350, 731
TauI GCSGC 2 cut(s) 140, 179
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 644
Tru9I TTAA 1 cut(s) 644
TseFI GTSAC 2 cut(s) 251, 263
TseI GCWGC 3 cut(s) 140, 173, 179
Tsp45I GTSAC 2 cut(s) 251, 263
TspDTI ATGAA 6 cut(s) 216, 351, 380, 386, 398, 452
TspMI CCCGGG 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 44, 548
XapI RAATTY 1 cut(s) 731
XceI RCATGY 1 cut(s) 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XmaI CCCGGG 1 cut(s) 39
XspI CTAG 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.