Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

53845470 .. 53847341

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTCAACAGGTAGAGGAGGAGAGGGAACAGCCAAACATGGAAGAAGCCGATCATCAAGAGGAAGAAGTCATCATAGGCTGCAACGAACAACACAACAACAACAACACCGCCACCACCACCACCAACAACAACATTATCATCAAGGGCAAGCGCACAAAGCGCCTTAGGCCTCAATCCCCCATCCCTTTCGCCATCCCCACGAACTCGTCCACCGCGGATGGCGGTGGCCAAGGTGGCGGTGGTGGTGAGTGTAACAACACCACCAACTCGTCTCCCACCACCTCCACGGAGTTCCAGGATAGCACCGAGGAAGAGGAGGACATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTGCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACACCCCTCGCCGCTGCTGTGGGGCCAGCCAAGATGGAGGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACATGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGCAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGGCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGTTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTACATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCGCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAACCACAACAAAACCAACACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGACGATCATCATCATCGAGATCAATCCAAATTTCTGTTTGCACCCAAACAACAGCAGCAGCAACAACCGCAGCAGCCTCCGCAGCAACAGCAACAAGAAAGGTTAAGAATTTTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

385

Amino Acids

42.01

Weight (kDa)

6.21

Isoelectric Point (pI)

76.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	174 - 200	7.7e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	262 - 288	1.8e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	849, 859
AccB7I	CCANNNNNTGG	1 cut(s)	568
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	2 cut(s)	334, 1011
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	2 cut(s)	1055, 1134
AcyI	GRCGYC	2 cut(s)	850, 860
AfaI	GTAC	2 cut(s)	763, 786
AfiI	CCNNNNNNNGG	4 cut(s)	364, 568, 804, 869
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	1 cut(s)	682
AjnI	CCWGG	3 cut(s)	297, 441, 882
AluBI	AGCT	5 cut(s)	388, 506, 878, 896, 929
AluI	AGCT	5 cut(s)	388, 506, 878, 896, 929
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	2 cut(s)	9, 279
AlwI	GGATC	2 cut(s)	334, 1011
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	8 cut(s)	170, 229, 355, 473, 491, 708, 828, 838
ApoI	RAATTY	2 cut(s)	1055, 1134
AspLEI	GCGC	4 cut(s)	156, 165, 852, 862
AspS9I	GGNCC	4 cut(s)	368, 473, 491, 872
AsuC2I	CCSGG	4 cut(s)	364, 365, 581, 857
AsuHPI	GGTGA	3 cut(s)	260, 569, 808
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	2 cut(s)	368, 872
AxyI	CCTNAGG	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	2 cut(s)	849, 859
BbsI	GAAGAC	2 cut(s)	672, 1032
Bbv12I	GWGCWC	1 cut(s)	797
BccI	CCATC	5 cut(s)	191, 203, 215, 478, 661
BceAI	ACGGC	1 cut(s)	723
BciT130I	CCWGG	3 cut(s)	299, 443, 884
BcnI	CCSGG	4 cut(s)	364, 365, 581, 857
BcoDI	GTCTC	2 cut(s)	9, 279
BfoI	RGCGCY	3 cut(s)	166, 853, 863
BglI	GCCNNNNNGGC	1 cut(s)	237
Bme1390I	CCNGG	7 cut(s)	299, 364, 365, 443, 581, 857, 884
Bme18I	GGWCC	2 cut(s)	368, 872
BmeT110I	CYCGRG	1 cut(s)	363
BmgT120I	GGNCC	4 cut(s)	368, 473, 491, 872
BmiI	GGNNCC	5 cut(s)	369, 474, 492, 851, 861
BmrFI	CCNGG	7 cut(s)	299, 364, 365, 443, 581, 857, 884
BpiI	GAAGAC	2 cut(s)	672, 1032
BplI	GAGNNNNNCTC	2 cut(s)	803, 835
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	4 cut(s)	364, 365, 581, 857
BsaBI	GATNNNNATC	2 cut(s)	1002, 1035
BsaHI	GRCGYC	2 cut(s)	850, 860
BsaJI	CCNNGG	9 cut(s)	216, 232, 288, 309, 363, 364, 831, 882, 921
BsaWI	WCCGGW	2 cut(s)	543, 821
BsaXI	ACNNNNNCTCC	4 cut(s)	695, 725, 883, 913
Bsc4I	CCNNNNNNNGG	4 cut(s)	364, 568, 804, 869
Bse118I	RCCGGY	1 cut(s)	493
Bse21I	CCTNAGG	1 cut(s)	167
Bse8I	GATNNNNATC	2 cut(s)	1002, 1035
BseBI	CCWGG	3 cut(s)	299, 443, 884
BseDI	CCNNGG	9 cut(s)	216, 232, 288, 309, 363, 364, 831, 882, 921
BseGI	GGATG	6 cut(s)	183, 195, 226, 625, 664, 716
BseJI	GATNNNNATC	2 cut(s)	1002, 1035
BseLI	CCNNNNNNNGG	4 cut(s)	364, 568, 804, 869
BseRI	GAGGAG	6 cut(s)	32, 35, 332, 703, 888, 891
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	8 cut(s)	172, 231, 357, 475, 493, 710, 830, 840
BshNI	GGYRCC	2 cut(s)	849, 859
BsiHKAI	GWGCWC	1 cut(s)	797
BsiHKCI	CYCGRG	1 cut(s)	363
BsiSI	CCGG	6 cut(s)	364, 494, 544, 580, 822, 856
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	4 cut(s)	364, 568, 804, 869
BsmAI	GTCTC	2 cut(s)	9, 279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	8 cut(s)	172, 231, 357, 475, 493, 710, 830, 840
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp143I	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
BspANI	GGCC	8 cut(s)	172, 231, 357, 475, 493, 710, 830, 840
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	5 cut(s)	369, 474, 492, 851, 861
BspPI	GGATC	2 cut(s)	334, 1011
BspT107I	GGYRCC	2 cut(s)	849, 859
BsrFI	RCCGGY	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	493
BssECI	CCNNGG	9 cut(s)	216, 232, 288, 309, 363, 364, 831, 882, 921
BssMI	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
BssNI	GRCGYC	2 cut(s)	850, 860
BssT1I	CCWWGG	3 cut(s)	232, 831, 921
Bst2UI	CCWGG	3 cut(s)	299, 443, 884
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	2 cut(s)	309, 735
BstACI	GRCGYC	2 cut(s)	850, 860
BstC8I	GCNNGC	4 cut(s)	152, 477, 495, 508
BstDEI	CTNAG	2 cut(s)	167, 780
BstDSI	CCRYGG	2 cut(s)	216, 288
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	6 cut(s)	183, 195, 226, 625, 664, 716
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	3 cut(s)	166, 853, 863
BstHHI	GCGC	4 cut(s)	156, 165, 852, 862
BstKTI	GATC	6 cut(s)	55, 342, 409, 1006, 1033, 1048
BstMAI	GTCTC	2 cut(s)	9, 279
BstMBI	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
BstNI	CCWGG	3 cut(s)	299, 443, 884
BstNSI	RCATGY	2 cut(s)	540, 988
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	7 cut(s)	297, 362, 363, 441, 579, 855, 882
BstUI	CGCG	1 cut(s)	218
BstV2I	GAAGAC	2 cut(s)	672, 1032
BstX2I	RGATCY	1 cut(s)	1003
BstYI	RGATCY	1 cut(s)	1003
Bsu36I	CCTNAGG	1 cut(s)	167
BsuRI	GGCC	8 cut(s)	172, 231, 357, 475, 493, 710, 830, 840
BtgI	CCRYGG	2 cut(s)	216, 288
BtsCI	GGATG	6 cut(s)	183, 195, 226, 625, 664, 716
Cac8I	GCNNGC	4 cut(s)	152, 477, 495, 508
CfoI	GCGC	4 cut(s)	156, 165, 852, 862
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	4 cut(s)	368, 473, 491, 872
Cfr42I	CCGCGG	1 cut(s)	219
Cfr9I	CCCGGG	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	762, 785
CviAII	CATG	8 cut(s)	40, 325, 537, 688, 694, 788, 844, 985
CviQI	GTAC	2 cut(s)	762, 785
DdeI	CTNAG	2 cut(s)	167, 780
DinI	GGCGCC	2 cut(s)	851, 861
DpnI	GATC	6 cut(s)	54, 341, 408, 1005, 1032, 1047
DpnII	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	309, 735
EarI	CTCTTC	2 cut(s)	309, 735
EciI	GGCGGA	1 cut(s)	824
Eco130I	CCWWGG	3 cut(s)	232, 831, 921
Eco147I	AGGCCT	2 cut(s)	172, 830
Eco47I	GGWCC	2 cut(s)	368, 872
Eco81I	CCTNAGG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	363
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	368
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	297, 441, 882
EcoT14I	CCWWGG	3 cut(s)	232, 831, 921
EgeI	GGCGCC	2 cut(s)	851, 861
EheI	GGCGCC	2 cut(s)	851, 861
ErhI	CCWWGG	3 cut(s)	232, 831, 921
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	8 cut(s)	43, 328, 540, 691, 697, 791, 847, 988
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	8 cut(s)	39, 324, 536, 687, 693, 787, 843, 984
FauI	CCCGC	2 cut(s)	503, 797
FokI	GGATG	6 cut(s)	170, 182, 233, 632, 671, 703
GlaI	GCGC	4 cut(s)	155, 164, 851, 861
HaeII	RGCGCY	3 cut(s)	166, 853, 863
HaeIII	GGCC	8 cut(s)	172, 231, 357, 475, 493, 710, 830, 840
HapII	CCGG	6 cut(s)	364, 494, 544, 580, 822, 856
HhaI	GCGC	4 cut(s)	156, 165, 852, 862
Hin1I	GRCGYC	2 cut(s)	850, 860
Hin1II	CATG	8 cut(s)	43, 328, 540, 691, 697, 791, 847, 988
Hin6I	GCGC	4 cut(s)	154, 163, 850, 860
HinP1I	GCGC	4 cut(s)	154, 163, 850, 860
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HinfI	GANTC	2 cut(s)	438, 586
HpaII	CCGG	6 cut(s)	364, 494, 544, 580, 822, 856
HphI	GGTGA	3 cut(s)	260, 569, 808
Hpy166II	GTNNAC	3 cut(s)	213, 816, 891
Hpy188I	TCNGA	2 cut(s)	435, 658
Hpy188III	TCNNGA	4 cut(s)	59, 682, 757, 1043
Hpy8I	GTNNAC	3 cut(s)	213, 816, 891
HpyAV	CCTTC	3 cut(s)	381, 564, 1022
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4V	TGCA	3 cut(s)	84, 531, 1067
HpyF3I	CTNAG	2 cut(s)	167, 780
Hsp92I	GRCGYC	2 cut(s)	850, 860
Hsp92II	CATG	8 cut(s)	43, 328, 540, 691, 697, 791, 847, 988
HspAI	GCGC	4 cut(s)	154, 163, 850, 860
KasI	GGCGCC	2 cut(s)	849, 859
KroI	GCCGGC	1 cut(s)	493
KroNI	GCCGGC	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
LmnI	GCTCC	3 cut(s)	800, 901, 934
MaeIII	GTNAC	6 cut(s)	254, 539, 575, 587, 648, 740
MalI	GATC	6 cut(s)	54, 341, 408, 1005, 1032, 1047
MboI	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
MboII	GAAGA	8 cut(s)	56, 77, 326, 366, 674, 677, 722, 1037
MflI	RGATCY	1 cut(s)	1003
MhlI	GDGCHC	1 cut(s)	797
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	5 cut(s)	331, 639, 674, 1055, 1134
MluNI	TGGCCA	1 cut(s)	231
Mly113I	GGCGCC	2 cut(s)	850, 860
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	3 cut(s)	413, 847, 929
Mox20I	TGGCCA	1 cut(s)	231
MroNI	GCCGGC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	2 cut(s)	968, 1130
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	3 cut(s)	218, 464, 506
MspI	CCGG	6 cut(s)	364, 494, 544, 580, 822, 856
MspR9I	CCNGG	7 cut(s)	299, 364, 365, 443, 581, 857, 884
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	3 cut(s)	299, 443, 884
MvnI	CGCG	1 cut(s)	218
NaeI	GCCGGC	1 cut(s)	495
NarI	GGCGCC	2 cut(s)	850, 860
NciI	CCSGG	4 cut(s)	364, 365, 581, 857
NdeII	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
NgoMIV	GCCGGC	1 cut(s)	493
NlaIII	CATG	8 cut(s)	43, 328, 540, 691, 697, 791, 847, 988
NlaIV	GGNNCC	5 cut(s)	369, 474, 492, 851, 861
NmuCI	GTSAC	2 cut(s)	575, 587
NspI	RCATGY	2 cut(s)	540, 988
PceI	AGGCCT	2 cut(s)	172, 830
PciI	ACATGT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	568
PfoI	TCCNGGA	2 cut(s)	297, 441
PleI	GAGTC	1 cut(s)	594
PluTI	GGCGCC	2 cut(s)	853, 863
PpsI	GAGTC	1 cut(s)	594
PpuMI	RGGWCCY	1 cut(s)	368
PscI	ACATGT	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	368
Psp6I	CCWGG	3 cut(s)	297, 441, 882
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	3 cut(s)	297, 441, 882
PspN4I	GGNNCC	5 cut(s)	369, 474, 492, 851, 861
PspPI	GGNCC	4 cut(s)	368, 473, 491, 872
PspPPI	RGGWCCY	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	1003
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	2 cut(s)	763, 786
RsaNI	GTAC	2 cut(s)	762, 785
RseI	CAYNNNNRTG	1 cut(s)	692
SacII	CCGCGG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	968, 1130
Sau3AI	GATC	6 cut(s)	52, 339, 406, 1003, 1030, 1045
Sau96I	GGNCC	4 cut(s)	368, 473, 491, 872
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	7 cut(s)	299, 364, 365, 443, 581, 857, 884
SduI	GDGCHC	1 cut(s)	797
SfoI	GGCGCC	2 cut(s)	851, 861
Sfr303I	CCGCGG	1 cut(s)	219
SgrBI	CCGCGG	1 cut(s)	219
SinI	GGWCC	2 cut(s)	368, 872
SmaI	CCCGGG	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
Sse9I	AATT	5 cut(s)	331, 639, 674, 1055, 1134
SseBI	AGGCCT	2 cut(s)	172, 830
SspDI	GGCGCC	2 cut(s)	849, 859
StuI	AGGCCT	2 cut(s)	172, 830
StyD4I	CCNGG	7 cut(s)	297, 362, 363, 441, 579, 855, 882
StyI	CCWWGG	3 cut(s)	232, 831, 921
TaaI	ACNGT	1 cut(s)	910
TaqI	TCGA	1 cut(s)	1042
TasI	AATT	5 cut(s)	331, 639, 674, 1055, 1134
TauI	GCSGC	2 cut(s)	464, 503
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	2 cut(s)	968, 1130
Tru9I	TTAA	2 cut(s)	968, 1130
TseFI	GTSAC	2 cut(s)	575, 587
Tsp45I	GTSAC	2 cut(s)	575, 587
TspDTI	ATGAA	5 cut(s)	540, 675, 704, 710, 722
TspGWI	ACGGA	1 cut(s)	305
TspMI	CCCGGG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	368, 872
XapI	RAATTY	2 cut(s)	1055, 1134
XceI	RCATGY	2 cut(s)	540, 988
XcmI	CCANNNNNNNNNTGG	2 cut(s)	239, 569
XmaI	CCCGGG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.