Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

21301872 .. 21302969

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1099800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGCAGCAGGTGGTGATCGTCATCATCAAGAGGAAGTCATGATTTTGGGGTGCAAGGAACAACATAACAACAATATTAATATTATGAAGGGTAAGCGCACAAAACGCCTGAGGCCCCAATCCCCAATCCCTTTTGCCATCCCAAGAAACTCATCTTCCCCGGAGGGTGGCGTTGGCGACCGTGGAGGTGGTGATGGCGGCGAAAATAACAACGATTGCATCAATAGTACCAACTTGTCCCCCACCACATCAGCTGAAATATTCCAAGACAGCACCACATCAGAAGAGGAGGACATGGCAAACTGCCTAATTCTTTTGGCGCAAGGCCAATCCCGGGCGGCTTCTTCCTCCCCCGATCACCACCACCAACCCCACAACGATCATATTACTACAAGTAGTCGAAGATTCTTGGAAGCAACAACTGCCCCGGCGGGCAAGGTGGCGGGGGCGGCTGGGTATTATGTGTATGAATGCAAGACTTGTAACAGAACGTTCCCTTCTTTCCAAGCATTAGGGGGTCACAGGGCGAGTCACAAGAAGCCGAAGGCGAATATAGGAGACGATCACAAAAACAAACACGTTGGAATTGGGCTATTGCCGCCGTCGGATGAAGATCAAGACACGCAATTGTTTAAGAACAACATTTTCCACAACAACAACATCAAGACATCTTCATCTCCACTTTCTCTCCATTTGAGCAACAGGGGTTTGGTTTTGAGCTCCAACAAGTCCTCTTCTAAAATCCACGAGTGCTCAATTTGCAGCGCGGAATTCACATCCGGACAGGCCTTGGGCGGCCACATGAGGCGCCACAGGGGGCCGACTGGAGCCACCAACACAACCTTGTCGTTGACGCCTCCGCCAGTCTCAGCGGCCTTTGAATCTCATCAACAGCAACAACAGCAGCAACCACAGCTGCCCATGAAGAAGCAGAAAAGCATGTTGAATTTGGATTTGGATCTCAACCTTCCAGCACCTTCAGAAGATGATCACCACAGAGAAACCAAGTTTGTGTTTGCTTCAAAGCAGCAGCAACAAGAACAGCAGCAGCAAGAAAGGTTAAGAACACAAATTTTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

366

Amino Acids

40.1

Weight (kDa)

7.34

Isoelectric Point (pI)

75.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	156 - 182	7.2e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	250 - 274	6.8e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	1 cut(s)	810
AccII	CGCG	1 cut(s)	770
AccIII	TCCGGA	1 cut(s)	782
AclI	AACGTT	1 cut(s)	494
AclWI	GGATC	1 cut(s)	969
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	3 cut(s)	773, 949, 1074
AcuI	CTGAAG	1 cut(s)	966
AcyI	GRCGYC	2 cut(s)	811, 857
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	170, 337
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	3 cut(s)	884, 949, 1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	941, 973
AluBI	AGCT	3 cut(s)	257, 723, 919
AluI	AGCT	3 cut(s)	257, 723, 919
Alw21I	GWGCWC	2 cut(s)	725, 758
Alw26I	GTCTC	2 cut(s)	555, 874
AlwI	GGATC	1 cut(s)	969
Ama87I	CYCGRG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	782
AoxI	GGCC	6 cut(s)	116, 328, 789, 799, 821, 876
ApeKI	GCWGC	8 cut(s)	8, 765, 907, 919, 1030, 1033, 1048, 1051
ApoI	RAATTY	3 cut(s)	773, 949, 1074
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	4 cut(s)	102, 325, 770, 813
AspS9I	GGNCC	2 cut(s)	117, 821
AsuC2I	CCSGG	4 cut(s)	164, 337, 338, 431
AsuHPI	GGTGA	4 cut(s)	29, 206, 353, 986
AvaI	CYCGRG	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	725
BauI	CACGAG	1 cut(s)	749
Bbv12I	GWGCWC	2 cut(s)	725, 758
BbvI	GCAGC	8 cut(s)	20, 777, 906, 919, 1042, 1045, 1060, 1063
BccI	CCATC	2 cut(s)	149, 191
BceAI	ACGGC	1 cut(s)	589
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	4 cut(s)	164, 337, 338, 431
BcoDI	GTCTC	2 cut(s)	555, 874
BfoI	RGCGCY	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	2
Bme1390I	CCNGG	4 cut(s)	164, 337, 338, 431
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	117, 821
BmiI	GGNNCC	4 cut(s)	119, 812, 822, 832
BmrFI	CCNGG	4 cut(s)	164, 337, 338, 431
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	849
BpuMI	CCSGG	4 cut(s)	164, 337, 338, 431
BsaBI	GATNNNNATC	3 cut(s)	24, 615, 960
BsaHI	GRCGYC	2 cut(s)	811, 857
BsaJI	CCNNGG	5 cut(s)	162, 184, 336, 429, 792
BsaWI	WCCGGW	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 337
Bse1I	ACTGG	2 cut(s)	832, 866
Bse21I	CCTNAGG	1 cut(s)	113
Bse8I	GATNNNNATC	3 cut(s)	24, 615, 960
BseAI	TCCGGA	1 cut(s)	782
BseDI	CCNNGG	5 cut(s)	162, 184, 336, 429, 792
BseGI	GGATG	3 cut(s)	141, 616, 779
BseJI	GATNNNNATC	3 cut(s)	24, 615, 960
BseLI	CCNNNNNNNGG	2 cut(s)	170, 337
BseMII	CTCAG	2 cut(s)	104, 885
BseNI	ACTGG	2 cut(s)	832, 866
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	8 cut(s)	20, 777, 906, 919, 1042, 1045, 1060, 1063
BseYI	CCCAGC	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	770
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	6 cut(s)	118, 330, 791, 801, 823, 878
BshNI	GGYRCC	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	725, 758
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	164, 337, 431, 783
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	170, 337
BsmAI	GTCTC	2 cut(s)	555, 874
BsmBI	CGTCTC	1 cut(s)	555
BsmFI	GGGAC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	6 cut(s)	118, 330, 791, 801, 823, 878
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	725, 758
Bsp13I	TCCGGA	1 cut(s)	782
Bsp143I	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
BspANI	GGCC	6 cut(s)	118, 330, 791, 801, 823, 878
BspCNI	CTCAG	2 cut(s)	105, 884
BspEI	TCCGGA	1 cut(s)	782
BspFNI	CGCG	1 cut(s)	770
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	119, 812, 822, 832
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	969
BspT107I	GGYRCC	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	832, 866
BssECI	CCNNGG	5 cut(s)	162, 184, 336, 429, 792
BssMI	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
BssNI	GRCGYC	2 cut(s)	811, 857
BssSI	CACGAG	1 cut(s)	749
BssT1I	CCWWGG	1 cut(s)	792
Bst2BI	CACGAG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	282, 742
BstACI	GRCGYC	2 cut(s)	811, 857
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	113, 871
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	3 cut(s)	141, 616, 779
BstFNI	CGCG	1 cut(s)	770
BstH2I	RGCGCY	1 cut(s)	814
BstHHI	GCGC	4 cut(s)	102, 325, 770, 813
BstKTI	GATC	7 cut(s)	22, 361, 385, 568, 619, 964, 994
BstMAI	GTCTC	2 cut(s)	555, 874
BstMBI	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 425, 452, 601, 762, 904, 916
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	162, 335, 336, 429
BstUI	CGCG	1 cut(s)	770
BstV1I	GCAGC	8 cut(s)	20, 777, 906, 919, 1042, 1045, 1060, 1063
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
Bsu36I	CCTNAGG	1 cut(s)	113
BsuRI	GGCC	6 cut(s)	118, 330, 791, 801, 823, 878
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	3 cut(s)	141, 616, 779
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	4 cut(s)	102, 325, 770, 813
Cfr13I	GGNCC	2 cut(s)	117, 821
Cfr9I	CCCGGG	1 cut(s)	336
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	5 cut(s)	43, 298, 805, 925, 943
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	113, 871
DinI	GGCGCC	1 cut(s)	812
DpnI	GATC	7 cut(s)	21, 360, 384, 567, 618, 963, 993
DpnII	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	2 cut(s)	282, 742
EarI	CTCTTC	2 cut(s)	282, 742
EciI	GGCGGA	1 cut(s)	852
Ecl136II	GAGCTC	1 cut(s)	723
Eco130I	CCWWGG	1 cut(s)	792
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	723
Eco57I	CTGAAG	1 cut(s)	966
Eco81I	CCTNAGG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	773
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	725
EgeI	GGCGCC	1 cut(s)	812
EheI	GGCGCC	1 cut(s)	812
ErhI	CCWWGG	1 cut(s)	792
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	5 cut(s)	46, 301, 808, 928, 946
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	42, 297, 804, 924, 942
FauI	CCCGC	2 cut(s)	427, 439
FbaI	TGATCA	1 cut(s)	991
FokI	GGATG	3 cut(s)	128, 623, 766
FriOI	GRGCYC	1 cut(s)	725
GlaI	GCGC	4 cut(s)	101, 324, 769, 812
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	849
HaeII	RGCGCY	1 cut(s)	814
HaeIII	GGCC	6 cut(s)	118, 330, 791, 801, 823, 878
HapII	CCGG	4 cut(s)	164, 337, 431, 783
HgaI	GACGC	1 cut(s)	865
HhaI	GCGC	4 cut(s)	102, 325, 770, 813
Hin1I	GRCGYC	2 cut(s)	811, 857
Hin1II	CATG	5 cut(s)	46, 301, 808, 928, 946
Hin6I	GCGC	4 cut(s)	100, 323, 768, 811
HinP1I	GCGC	4 cut(s)	100, 323, 768, 811
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	3 cut(s)	408, 532, 884
HpaII	CCGG	4 cut(s)	164, 337, 431, 783
HphI	GGTGA	4 cut(s)	29, 206, 353, 986
Hpy166II	GTNNAC	1 cut(s)	855
Hpy188I	TCNGA	3 cut(s)	286, 610, 985
Hpy188III	TCNNGA	5 cut(s)	32, 43, 620, 667, 783
Hpy8I	GTNNAC	1 cut(s)	855
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	5 cut(s)	85, 510, 541, 980, 990
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	494, 582
HpyCH4V	TGCA	4 cut(s)	57, 222, 477, 765
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 425, 452, 601, 762, 904, 916
HpyF3I	CTNAG	2 cut(s)	113, 871
HpySE526I	ACGT	2 cut(s)	494, 582
Hsp92I	GRCGYC	2 cut(s)	811, 857
Hsp92II	CATG	5 cut(s)	46, 301, 808, 928, 946
HspAI	GCGC	4 cut(s)	100, 323, 768, 811
KasI	GGCGCC	1 cut(s)	810
Kpn2I	TCCGGA	1 cut(s)	782
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
LmnI	GCTCC	2 cut(s)	728, 830
Lsp1109I	GCAGC	8 cut(s)	20, 777, 906, 919, 1042, 1045, 1060, 1063
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	494, 582
MaeIII	GTNAC	3 cut(s)	485, 521, 533
MalI	GATC	7 cut(s)	21, 360, 384, 567, 618, 963, 993
MboI	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
MboII	GAAGA	9 cut(s)	150, 299, 339, 417, 626, 666, 729, 940, 998
MfeI	CAATTG	1 cut(s)	629
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	2 cut(s)	725, 758
MluCI	AATT	7 cut(s)	312, 588, 629, 759, 773, 949, 1074
Mly113I	GGCGCC	1 cut(s)	811
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	3 cut(s)	565, 588, 750
MroI	TCCGGA	1 cut(s)	782
MseI	TTAA	3 cut(s)	81, 636, 1064
MspA1I	CMGCKG	3 cut(s)	257, 875, 919
MspI	CCGG	4 cut(s)	164, 337, 431, 783
MspR9I	CCNGG	4 cut(s)	164, 337, 338, 431
MunI	CAATTG	1 cut(s)	629
Mva1269I	GAATGC	1 cut(s)	479
MvnI	CGCG	1 cut(s)	770
MwoI	GCNNNNNNNGC	7 cut(s)	108, 425, 452, 601, 762, 904, 916
NarI	GGCGCC	1 cut(s)	811
NciI	CCSGG	4 cut(s)	164, 337, 338, 431
NdeII	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
NlaIII	CATG	5 cut(s)	46, 301, 808, 928, 946
NlaIV	GGNNCC	4 cut(s)	119, 812, 822, 832
NmuCI	GTSAC	2 cut(s)	521, 533
NspI	RCATGY	1 cut(s)	946
PagI	TCATGA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	2
PceI	AGGCCT	1 cut(s)	791
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	408, 884
PleI	GAGTC	1 cut(s)	540
PluTI	GGCGCC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	540
PshBI	ATTAAT	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	725
Psp1406I	AACGTT	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	4 cut(s)	119, 812, 822, 832
PspPI	GGNCC	2 cut(s)	117, 821
PsuI	RGATCY	1 cut(s)	961
PvuII	CAGCTG	2 cut(s)	257, 919
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	81, 636, 1064
Sau3AI	GATC	7 cut(s)	19, 358, 382, 565, 616, 961, 991
Sau96I	GGNCC	2 cut(s)	117, 821
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	4 cut(s)	164, 337, 338, 431
SduI	GDGCHC	2 cut(s)	725, 758
SfaNI	GCATC	1 cut(s)	231
SfoI	GGCGCC	1 cut(s)	812
SmaI	CCCGGG	1 cut(s)	338
Sse9I	AATT	7 cut(s)	312, 588, 629, 759, 773, 949, 1074
SseBI	AGGCCT	1 cut(s)	791
SspDI	GGCGCC	1 cut(s)	810
SspI	AATATT	3 cut(s)	79, 85, 264
SstI	GAGCTC	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	4 cut(s)	162, 335, 336, 429
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	497, 585
TaqI	TCGA	1 cut(s)	403
TasI	AATT	7 cut(s)	312, 588, 629, 759, 773, 949, 1074
TauI	GCSGC	6 cut(s)	204, 344, 455, 604, 801, 878
TfiI	GAWTC	2 cut(s)	408, 884
Tru1I	TTAA	3 cut(s)	81, 636, 1064
Tru9I	TTAA	3 cut(s)	81, 636, 1064
TseFI	GTSAC	2 cut(s)	521, 533
TseI	GCWGC	8 cut(s)	8, 765, 907, 919, 1030, 1033, 1048, 1051
Tsp45I	GTSAC	2 cut(s)	521, 533
TspDTI	ATGAA	5 cut(s)	104, 486, 627, 666, 941
TspMI	CCCGGG	1 cut(s)	336
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	3 cut(s)	773, 949, 1074
XceI	RCATGY	1 cut(s)	946
XmaI	CCCGGG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.