Rh1BG267500

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
40142966 .. 40145673
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG267500.1

Sequence Viewer

Length: 1191 bp
ATGTCTCAACAGGTAGAGGAGGAGAGGGAACAGCCAAACATGGAAGAAGCCGATCATCAACATGATCATCAAGAGGAAGAAGTCATCATAGGCTGCAACGAACAACACAACAGCAACAACAACACCGCCGCCACCACCACCAACAACAACATTATTATCAAGGGCAAGCGCACAAAGCGCCTTAGGCCTCAATCCCCCATCCCTTTCGCCATCCCCACGAACTCGTCCACCGCGGATGGCGTTGGCCAAGGTGGCGGTGGTGGTGAGTGTGACAACACCACCAACTCGTCCCCCACCACCTCCACGGAGTTCCAGGATAGCACCGAGGAAGAGGAGGACATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTGCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACGCCCCTCGCAGCTGCTGTGGGGCCCGCCAAGATGGCTGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGCAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGCTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCTCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAAACACAACAAAACCAACACCAACATCAACACCACCACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGATGATCATCATCATCGAGATCAATCCAAATTTGTGTTTGCACCCAAACAGCAGCAGCAACAACAACCGCAGCAGCCTCCGCAGCAACAGCAGCAAGAAAGGTTAAGAATTTTGGTGGATTGTCATTACTAA

Protein Analysis

396

Amino Acids

43.38

Weight (kDa)

6.3

Isoelectric Point (pI)

74.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 179 - 205 8e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 267 - 293 1.8e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10470 AT5G04390
fragaria_vesca FvH4_7g18360
malus_domestica MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica Prupe.2G205700_v2.0.a1
pyrus_communis pycom07g16190
rosa_chinensis RchiOBHm_Chr1g0362171
rosa_laevigata RLG00000027670
rosa_rugosa Rorug01G0294800
rosa_samantha Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana Rw1G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 864
AccB7I CCANNNNNTGG 1 cut(s) 583
AccII CGCG 1 cut(s) 233
AclWI GGATC 2 cut(s) 349, 1044
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 1088, 1167
AcyI GRCGYC 1 cut(s) 865
AfaI GTAC 1 cut(s) 778
AfiI CCNNNNNNNGG 4 cut(s) 379, 583, 819, 884
AflIII ACRYGT 2 cut(s) 551, 720
AgsI TTSAA 1 cut(s) 697
AjiI CACGTC 2 cut(s) 552, 723
AjnI CCWGG 3 cut(s) 312, 456, 897
AluBI AGCT 6 cut(s) 403, 479, 521, 893, 911, 944
AluI AGCT 6 cut(s) 403, 479, 521, 893, 911, 944
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 349, 1044
AlwNI CAGNNNCTG 1 cut(s) 482
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 7 cut(s) 185, 244, 370, 488, 506, 843, 853
ApaI GGGCCC 1 cut(s) 492
ApoI RAATTY 2 cut(s) 1088, 1167
AspLEI GCGC 3 cut(s) 171, 180, 867
AspS9I GGNCC 5 cut(s) 383, 488, 489, 506, 887
AsuC2I CCSGG 4 cut(s) 379, 380, 596, 872
AsuHPI GGTGA 3 cut(s) 275, 584, 823
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 2 cut(s) 383, 887
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 492
BalI TGGCCA 1 cut(s) 246
BanI GGYRCC 1 cut(s) 864
BanII GRGCYC 2 cut(s) 492, 877
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 812
BccI CCATC 5 cut(s) 206, 218, 230, 493, 676
BciT130I CCWGG 3 cut(s) 314, 458, 899
BclI TGATCA 2 cut(s) 64, 1063
BcnI CCSGG 4 cut(s) 379, 380, 596, 872
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 2 cut(s) 181, 868
BglI GCCNNNNNGGC 2 cut(s) 252, 500
Bme1390I CCNGG 7 cut(s) 314, 379, 380, 458, 596, 872, 899
Bme18I GGWCC 2 cut(s) 383, 887
BmeT110I CYCGRG 1 cut(s) 378
BmgBI CACGTC 2 cut(s) 552, 723
BmgT120I GGNCC 5 cut(s) 383, 488, 489, 506, 887
BmiI GGNNCC 5 cut(s) 384, 489, 490, 866, 876
BmrFI CCNGG 7 cut(s) 314, 379, 380, 458, 596, 872, 899
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 4 cut(s) 379, 380, 596, 872
BsaBI GATNNNNATC 3 cut(s) 1035, 1065, 1068
BsaHI GRCGYC 1 cut(s) 865
BsaJI CCNNGG 9 cut(s) 231, 247, 303, 324, 378, 379, 846, 897, 936
BsaWI WCCGGW 2 cut(s) 558, 836
BsaXI ACNNNNNCTCC 4 cut(s) 710, 740, 898, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 379, 583, 819, 884
Bse118I RCCGGY 1 cut(s) 508
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 3 cut(s) 1035, 1065, 1068
BseBI CCWGG 3 cut(s) 314, 458, 899
BseDI CCNNGG 9 cut(s) 231, 247, 303, 324, 378, 379, 846, 897, 936
BseGI GGATG 6 cut(s) 198, 210, 241, 640, 679, 731
BseJI GATNNNNATC 3 cut(s) 1035, 1065, 1068
BseLI CCNNNNNNNGG 4 cut(s) 379, 583, 819, 884
BseRI GAGGAG 6 cut(s) 32, 35, 347, 718, 903, 906
BseSI GKGCMC 1 cut(s) 492
BseYI CCCAGC 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 7 cut(s) 187, 246, 372, 490, 508, 845, 855
BshNI GGYRCC 1 cut(s) 864
BsiHKAI GWGCWC 1 cut(s) 812
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 6 cut(s) 379, 509, 559, 595, 837, 871
BslFI GGGAC 2 cut(s) 274, 379
BslI CCNNNNNNNGG 4 cut(s) 379, 583, 819, 884
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 274, 379
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 7 cut(s) 187, 246, 372, 490, 508, 845, 855
BsoBI CYCGRG 1 cut(s) 378
Bsp120I GGGCCC 1 cut(s) 488
Bsp1286I GDGCHC 3 cut(s) 492, 812, 877
Bsp143I GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
BspANI GGCC 7 cut(s) 187, 246, 372, 490, 508, 845, 855
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 5 cut(s) 384, 489, 490, 866, 876
BspPI GGATC 2 cut(s) 349, 1044
BspT107I GGYRCC 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 508
BssECI CCNNGG 9 cut(s) 231, 247, 303, 324, 378, 379, 846, 897, 936
BssMI GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
BssNI GRCGYC 1 cut(s) 865
BssT1I CCWWGG 3 cut(s) 247, 846, 936
Bst2UI CCWGG 3 cut(s) 314, 458, 899
Bst4CI ACNGT 1 cut(s) 925
Bst6I CTCTTC 2 cut(s) 324, 750
BstACI GRCGYC 1 cut(s) 865
BstC8I GCNNGC 4 cut(s) 167, 492, 510, 523
BstDEI CTNAG 2 cut(s) 182, 795
BstDSI CCRYGG 2 cut(s) 231, 303
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 6 cut(s) 198, 210, 241, 640, 679, 731
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 2 cut(s) 181, 868
BstHHI GCGC 3 cut(s) 171, 180, 867
BstKTI GATC 7 cut(s) 55, 67, 357, 424, 1039, 1066, 1081
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
BstNI CCWGG 3 cut(s) 314, 458, 899
BstNSI RCATGY 1 cut(s) 1021
BstPI GGTNACC 1 cut(s) 590
BstSCI CCNGG 7 cut(s) 312, 377, 378, 456, 594, 870, 897
BstSLI GKGCMC 1 cut(s) 492
BstUI CGCG 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 1036
BstYI RGATCY 1 cut(s) 1036
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 7 cut(s) 187, 246, 372, 490, 508, 845, 855
BtgI CCRYGG 2 cut(s) 231, 303
BtrI CACGTC 2 cut(s) 552, 723
BtsCI GGATG 6 cut(s) 198, 210, 241, 640, 679, 731
Cac8I GCNNGC 4 cut(s) 167, 492, 510, 523
CaiI CAGNNNCTG 1 cut(s) 482
CciI TCATGA 1 cut(s) 802
CfoI GCGC 3 cut(s) 171, 180, 867
Cfr10I RCCGGY 1 cut(s) 508
Cfr13I GGNCC 5 cut(s) 383, 488, 489, 506, 887
Cfr42I CCGCGG 1 cut(s) 234
Cfr9I CCCGGG 1 cut(s) 378
Csp6I GTAC 1 cut(s) 777
CviAII CATG 8 cut(s) 40, 62, 340, 703, 709, 803, 859, 1018
CviQI GTAC 1 cut(s) 777
DdeI CTNAG 2 cut(s) 182, 795
DinI GGCGCC 1 cut(s) 866
DpnI GATC 7 cut(s) 54, 66, 356, 423, 1038, 1065, 1080
DpnII GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 324, 750
EarI CTCTTC 2 cut(s) 324, 750
EciI GGCGGA 1 cut(s) 839
Eco130I CCWWGG 3 cut(s) 247, 846, 936
Eco147I AGGCCT 2 cut(s) 187, 845
Eco24I GRGCYC 2 cut(s) 492, 877
Eco47I GGWCC 2 cut(s) 383, 887
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 590
EcoO109I RGGNCCY 2 cut(s) 383, 488
EcoO65I GGTNACC 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 312, 456, 897
EcoT14I CCWWGG 3 cut(s) 247, 846, 936
EcoT38I GRGCYC 2 cut(s) 492, 877
EgeI GGCGCC 1 cut(s) 866
EheI GGCGCC 1 cut(s) 866
ErhI CCWWGG 3 cut(s) 247, 846, 936
FaeI CATG 8 cut(s) 43, 65, 343, 706, 712, 806, 862, 1021
FaqI GGGAC 2 cut(s) 274, 379
FatI CATG 8 cut(s) 39, 61, 339, 702, 708, 802, 858, 1017
FauI CCCGC 3 cut(s) 499, 518, 812
FbaI TGATCA 2 cut(s) 64, 1063
FokI GGATG 6 cut(s) 185, 197, 248, 647, 686, 718
FriOI GRGCYC 2 cut(s) 492, 877
GlaI GCGC 3 cut(s) 170, 179, 866
GsaI CCCAGC 1 cut(s) 507
HaeII RGCGCY 2 cut(s) 181, 868
HaeIII GGCC 7 cut(s) 187, 246, 372, 490, 508, 845, 855
HapII CCGG 6 cut(s) 379, 509, 559, 595, 837, 871
HhaI GCGC 3 cut(s) 171, 180, 867
Hin1I GRCGYC 1 cut(s) 865
Hin1II CATG 8 cut(s) 43, 65, 343, 706, 712, 806, 862, 1021
Hin6I GCGC 3 cut(s) 169, 178, 865
HinP1I GCGC 3 cut(s) 169, 178, 865
HincII GTYRAC 1 cut(s) 906
HindII GTYRAC 1 cut(s) 906
HinfI GANTC 2 cut(s) 453, 601
HpaII CCGG 6 cut(s) 379, 509, 559, 595, 837, 871
HphI GGTGA 3 cut(s) 275, 584, 823
Hpy166II GTNNAC 3 cut(s) 228, 831, 906
Hpy188I TCNGA 2 cut(s) 450, 673
Hpy188III TCNNGA 5 cut(s) 71, 697, 772, 803, 1076
Hpy8I GTNNAC 3 cut(s) 228, 831, 906
HpyAV CCTTC 3 cut(s) 396, 579, 1055
HpyCH4III ACNGT 1 cut(s) 925
HpyCH4IV ACGT 2 cut(s) 551, 722
HpyCH4V TGCA 3 cut(s) 96, 546, 1100
HpyF3I CTNAG 2 cut(s) 182, 795
HpySE526I ACGT 2 cut(s) 551, 722
Hsp92I GRCGYC 1 cut(s) 865
Hsp92II CATG 8 cut(s) 43, 65, 343, 706, 712, 806, 862, 1021
HspAI GCGC 3 cut(s) 169, 178, 865
KasI GGCGCC 1 cut(s) 864
KroI GCCGGC 1 cut(s) 508
KroNI GCCGGC 1 cut(s) 510
Ksp22I TGATCA 2 cut(s) 64, 1063
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
LmnI GCTCC 4 cut(s) 815, 880, 916, 949
MaeII ACGT 2 cut(s) 551, 722
MaeIII GTNAC 6 cut(s) 269, 554, 590, 602, 663, 755
MalI GATC 7 cut(s) 54, 66, 356, 423, 1038, 1065, 1080
MboI GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
MboII GAAGA 8 cut(s) 56, 89, 341, 381, 689, 692, 737, 1070
MflI RGATCY 1 cut(s) 1036
MhlI GDGCHC 3 cut(s) 492, 812, 877
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 5 cut(s) 346, 654, 689, 1088, 1167
MluNI TGGCCA 1 cut(s) 246
Mly113I GGCGCC 1 cut(s) 865
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 3 cut(s) 428, 862, 944
Mox20I TGGCCA 1 cut(s) 246
MroNI GCCGGC 1 cut(s) 508
MscI TGGCCA 1 cut(s) 246
MseI TTAA 2 cut(s) 1001, 1163
MslI CAYNNNNRTG 2 cut(s) 60, 707
Msp20I TGGCCA 1 cut(s) 246
MspA1I CMGCKG 3 cut(s) 233, 479, 521
MspI CCGG 6 cut(s) 379, 509, 559, 595, 837, 871
MspR9I CCNGG 7 cut(s) 314, 379, 380, 458, 596, 872, 899
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 3 cut(s) 314, 458, 899
MvnI CGCG 1 cut(s) 233
NaeI GCCGGC 1 cut(s) 510
NarI GGCGCC 1 cut(s) 865
NciI CCSGG 4 cut(s) 379, 380, 596, 872
NdeII GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
NgoMIV GCCGGC 1 cut(s) 508
NlaIII CATG 8 cut(s) 43, 65, 343, 706, 712, 806, 862, 1021
NlaIV GGNNCC 5 cut(s) 384, 489, 490, 866, 876
NmuCI GTSAC 3 cut(s) 269, 590, 602
NspI RCATGY 1 cut(s) 1021
PagI TCATGA 1 cut(s) 802
PceI AGGCCT 2 cut(s) 187, 845
PctI GAATGC 1 cut(s) 548
PdiI GCCGGC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 2 cut(s) 312, 456
PleI GAGTC 1 cut(s) 609
PluTI GGCGCC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 609
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 312, 456, 897
PspEI GGTNACC 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 3 cut(s) 312, 456, 897
PspN4I GGNNCC 5 cut(s) 384, 489, 490, 866, 876
PspOMI GGGCCC 1 cut(s) 488
PspPI GGNCC 5 cut(s) 383, 488, 489, 506, 887
PspPPI RGGWCCY 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 1036
PvuII CAGCTG 2 cut(s) 479, 521
RsaI GTAC 1 cut(s) 778
RsaNI GTAC 1 cut(s) 777
RseI CAYNNNNRTG 2 cut(s) 60, 707
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 2 cut(s) 1001, 1163
Sau3AI GATC 7 cut(s) 52, 64, 354, 421, 1036, 1063, 1078
Sau96I GGNCC 5 cut(s) 383, 488, 489, 506, 887
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 7 cut(s) 314, 379, 380, 458, 596, 872, 899
SduI GDGCHC 3 cut(s) 492, 812, 877
SfoI GGCGCC 1 cut(s) 866
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 2 cut(s) 383, 887
SmaI CCCGGG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 60, 707
SmlI CTYRAG 1 cut(s) 772
SmoI CTYRAG 1 cut(s) 772
Sse9I AATT 5 cut(s) 346, 654, 689, 1088, 1167
SseBI AGGCCT 2 cut(s) 187, 845
SspDI GGCGCC 1 cut(s) 864
StuI AGGCCT 2 cut(s) 187, 845
StyD4I CCNGG 7 cut(s) 312, 377, 378, 456, 594, 870, 897
StyI CCWWGG 3 cut(s) 247, 846, 936
TaaI ACNGT 1 cut(s) 925
TaiI ACGT 2 cut(s) 554, 725
TaqI TCGA 1 cut(s) 1075
TasI AATT 5 cut(s) 346, 654, 689, 1088, 1167
TauI GCSGC 2 cut(s) 131, 518
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 2 cut(s) 1001, 1163
Tru9I TTAA 2 cut(s) 1001, 1163
TseFI GTSAC 3 cut(s) 269, 590, 602
Tsp45I GTSAC 3 cut(s) 269, 590, 602
TspDTI ATGAA 6 cut(s) 555, 690, 719, 725, 737, 791
TspGWI ACGGA 1 cut(s) 320
TspMI CCCGGG 1 cut(s) 378
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 383, 887
XapI RAATTY 2 cut(s) 1088, 1167
XceI RCATGY 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 2 cut(s) 254, 584
XmaI CCCGGG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.