Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24016110 .. 24017189

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGGTGCAAGGAACAACACCACAACAACATTATTATCAAGGGTAAGCGCACAAAGCGCTTGAGGCCCCAATCTCCAATCCCTTTTGCCATCCCAACAACCTCATCGTCCCCCGAAGATGGCGGTGGCGGTGATGGAGGCGGCGAGAACGATTACATCAATAGTGCCACCAACTTGTCTCCCACCACATCTGTTGAATTTCAAGATAGCACCACAGAGGAAGAGGAGGACATGGCAAACTGCCTAATTCTGTTGGCAAAAGGCCAATCCAGGGCTGCTTCTTCTTCCCCCAGTCACCACCACCACCAACCCCATAACGATCACAACACTACAAGTCGAAGGTTCTTGGAGGCAACAACAGCGGTGGGGCCTACCGGGGCCAAGGCGGGGGCGGTGGCAGCAGGAGGAGGGTATCATGCGTATGAATGCAAGACTTGCAACAGAACTTTCCCTTCTTTCCAAGCATTAGGAGGGCACAGGGCCAGCCACAAGAAGCCCAAGGCAAATACTGGGGATGATCAGAAAAACAAACACTTTGCAATTGGGTTGTTGCCATCAGATGAAGAAGACACACAATTATTCAAGAACAGCATTCTCCACAACAACAACAATACATCTTCTTCCCCACTTTCTCTGCATTTGAGCAACAGAGGGTTGGTCTTGAGTAGCAACAAGTCTTCTTCCAAGGTTCATGAGTGTTCAATTTGTGGGGCAGAATTCACATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAGCGCCAGCTGCAGCCAACACAACCTTGGCATTGACAGCTCCCTCAGTCTCTGCCTTTGAACCTCAGCAACATCAAAATCAACATCAACAACAACAACCCATTAAGAAACAGAGAAGCGTGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCAGAAGATGATCACCATAAAGAATCCAAATTTGTGTTTGCAACATCAAAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAACAGCAGCAACAGCAGCAGCAGCAACCAGAAAGGTTAAGAACACAAATTCTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

360

Amino Acids

39.34

Weight (kDa)

8.16

Isoelectric Point (pI)

77.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	753
AciI	CCGC	6 cut(s)	123, 129, 141, 362, 386, 392
AclWI	GGATC	1 cut(s)	906
AcsI	RAATTY	4 cut(s)	197, 716, 944, 1056
AcyI	GRCGYC	1 cut(s)	754
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	119, 271, 387
AgsI	TTSAA	5 cut(s)	197, 203, 583, 702, 821
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	2 cut(s)	770, 800
AluI	AGCT	2 cut(s)	770, 800
Alw26I	GTCTC	2 cut(s)	183, 814
AlwI	GGATC	1 cut(s)	906
AlwNI	CAGNNNCTG	1 cut(s)	812
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	6 cut(s)	65, 262, 368, 378, 480, 742
ApoI	RAATTY	4 cut(s)	197, 716, 944, 1056
AspLEI	GCGC	4 cut(s)	51, 60, 756, 766
AspS9I	GGNCC	4 cut(s)	66, 368, 378, 480
AsuC2I	CCSGG	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	143, 287, 920
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	753
BbsI	GAAGAC	2 cut(s)	573, 669
BbvCI	CCTCAGC	1 cut(s)	825
BccI	CCATC	4 cut(s)	98, 113, 128, 562
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	2 cut(s)	517, 925
BcnI	CCSGG	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	183, 814
BfmI	CTRYAG	1 cut(s)	771
BfoI	RGCGCY	3 cut(s)	61, 757, 767
Bme1390I	CCNGG	2 cut(s)	271, 376
BmgT120I	GGNCC	4 cut(s)	66, 368, 378, 480
BmiI	GGNNCC	4 cut(s)	68, 369, 379, 755
BmrFI	CCNGG	2 cut(s)	271, 376
BmrI	ACTGGG	2 cut(s)	285, 519
BmuI	ACTGGG	2 cut(s)	285, 519
BpiI	GAAGAC	2 cut(s)	573, 669
Bpu10I	CCTNAGC	1 cut(s)	825
BpuEI	CTTGAG	2 cut(s)	82, 682
BpuMI	CCSGG	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	897
BsaHI	GRCGYC	1 cut(s)	754
BsaJI	CCNNGG	7 cut(s)	270, 375, 381, 498, 684, 735, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 271, 387
Bse1I	ACTGG	2 cut(s)	291, 514
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	7 cut(s)	270, 375, 381, 498, 684, 735, 786
BseGI	GGATG	2 cut(s)	90, 520
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	3 cut(s)	119, 271, 387
BseMII	CTCAG	2 cut(s)	819, 839
BseNI	ACTGG	2 cut(s)	291, 514
BseRI	GAGGAG	2 cut(s)	239, 420
BseSI	GKGCMC	1 cut(s)	477
BshFI	GGCC	6 cut(s)	67, 264, 370, 380, 482, 744
BshNI	GGYRCC	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	119, 271, 387
BsmAI	GTCTC	2 cut(s)	183, 814
BsmFI	GGGAC	1 cut(s)	94
BsmI	GAATGC	2 cut(s)	431, 591
BsnI	GGCC	6 cut(s)	67, 264, 370, 380, 482, 744
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	319, 517, 898, 925
BspACI	CCGC	6 cut(s)	123, 129, 141, 362, 386, 392
BspANI	GGCC	6 cut(s)	67, 264, 370, 380, 482, 744
BspCNI	CTCAG	2 cut(s)	818, 838
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	4 cut(s)	68, 369, 379, 755
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	291, 514
BssECI	CCNNGG	7 cut(s)	270, 375, 381, 498, 684, 735, 786
BssMI	GATC	4 cut(s)	319, 517, 898, 925
BssNI	GRCGYC	1 cut(s)	754
BssT1I	CCWWGG	5 cut(s)	381, 498, 684, 735, 786
Bst2UI	CCWGG	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	754
BstAPI	GCANNNNNTGC	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	484, 732, 768
BstDEI	CTNAG	2 cut(s)	805, 825
BstF5I	GGATG	2 cut(s)	90, 520
BstH2I	RGCGCY	3 cut(s)	61, 757, 767
BstHHI	GCGC	4 cut(s)	51, 60, 756, 766
BstKTI	GATC	4 cut(s)	322, 520, 901, 928
BstMAI	GTCTC	2 cut(s)	183, 814
BstMBI	GATC	4 cut(s)	319, 517, 898, 925
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	269, 374
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	477
BstV2I	GAAGAC	2 cut(s)	573, 669
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	6 cut(s)	67, 264, 370, 380, 482, 744
BtsCI	GGATG	2 cut(s)	90, 520
Cac8I	GCNNGC	3 cut(s)	484, 732, 768
CaiI	CAGNNNCTG	1 cut(s)	812
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	4 cut(s)	51, 60, 756, 766
Cfr13I	GGNCC	4 cut(s)	66, 368, 378, 480
CspCI	CAANNNNNGTGG	4 cut(s)	175, 210, 345, 380
CviAII	CATG	4 cut(s)	232, 416, 692, 748
DdeI	CTNAG	2 cut(s)	805, 825
DinI	GGCGCC	1 cut(s)	755
DpnI	GATC	4 cut(s)	321, 519, 900, 927
DpnII	GATC	4 cut(s)	319, 517, 898, 925
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	5 cut(s)	381, 498, 684, 735, 786
Eco47III	AGCGCT	1 cut(s)	59
EcoO109I	RGGNCCY	2 cut(s)	66, 368
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	5 cut(s)	381, 498, 684, 735, 786
EgeI	GGCGCC	1 cut(s)	755
EheI	GGCGCC	1 cut(s)	755
ErhI	CCWWGG	5 cut(s)	381, 498, 684, 735, 786
FaeI	CATG	4 cut(s)	235, 419, 695, 751
FaiI	YATR	7 cut(s)	233, 315, 417, 423, 693, 749, 933
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	4 cut(s)	231, 415, 691, 747
FauI	CCCGC	1 cut(s)	379
FbaI	TGATCA	2 cut(s)	517, 925
FokI	GGATG	2 cut(s)	77, 527
GlaI	GCGC	4 cut(s)	50, 59, 755, 765
HaeII	RGCGCY	3 cut(s)	61, 757, 767
HaeIII	GGCC	6 cut(s)	67, 264, 370, 380, 482, 744
HapII	CCGG	1 cut(s)	375
HhaI	GCGC	4 cut(s)	51, 60, 756, 766
Hin1I	GRCGYC	1 cut(s)	754
Hin1II	CATG	4 cut(s)	235, 419, 695, 751
Hin6I	GCGC	4 cut(s)	49, 58, 754, 764
HinP1I	GCGC	4 cut(s)	49, 58, 754, 764
HinfI	GANTC	1 cut(s)	938
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	3 cut(s)	143, 287, 920
Hpy188I	TCNGA	2 cut(s)	522, 559
Hpy188III	TCNNGA	4 cut(s)	203, 583, 661, 692
HpyAV	CCTTC	3 cut(s)	333, 462, 917
HpyCH4V	TGCA	7 cut(s)	9, 429, 438, 539, 637, 773, 956
HpyF3I	CTNAG	2 cut(s)	805, 825
Hsp92I	GRCGYC	1 cut(s)	754
Hsp92II	CATG	4 cut(s)	235, 419, 695, 751
HspAI	GCGC	4 cut(s)	49, 58, 754, 764
KasI	GGCGCC	1 cut(s)	753
Ksp22I	TGATCA	2 cut(s)	517, 925
Kzo9I	GATC	4 cut(s)	319, 517, 898, 925
LmnI	GCTCC	1 cut(s)	805
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	321, 519, 900, 927
MboI	GATC	4 cut(s)	319, 517, 898, 925
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	8 cut(s)	197, 246, 540, 575, 702, 716, 944, 1056
Mly113I	GGCGCC	1 cut(s)	754
MseI	TTAA	2 cut(s)	864, 1046
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	362, 770
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	2 cut(s)	271, 376
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	431, 591
MvaI	CCWGG	1 cut(s)	271
NarI	GGCGCC	1 cut(s)	754
NciI	CCSGG	1 cut(s)	376
NdeII	GATC	4 cut(s)	319, 517, 898, 925
NlaIII	CATG	4 cut(s)	235, 419, 695, 751
NlaIV	GGNNCC	4 cut(s)	68, 369, 379, 755
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	691
PctI	GAATGC	2 cut(s)	431, 591
PfeI	GAWTC	1 cut(s)	938
PluTI	GGCGCC	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	4 cut(s)	68, 369, 379, 755
PspPI	GGNCC	4 cut(s)	66, 368, 378, 480
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	864, 1046
Sau3AI	GATC	4 cut(s)	319, 517, 898, 925
Sau96I	GGNCC	4 cut(s)	66, 368, 378, 480
ScrFI	CCNGG	2 cut(s)	271, 376
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	104, 344, 690, 772, 788, 802, 826, 909, 1046
SfcI	CTRYAG	1 cut(s)	771
SfoI	GGCGCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	61, 661
SmoI	CTYRAG	2 cut(s)	61, 661
Sse9I	AATT	8 cut(s)	197, 246, 540, 575, 702, 716, 944, 1056
SsiI	CCGC	6 cut(s)	123, 129, 141, 362, 386, 392
SspDI	GGCGCC	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	269, 374
StyI	CCWWGG	5 cut(s)	381, 498, 684, 735, 786
TaqI	TCGA	1 cut(s)	337
TasI	AATT	8 cut(s)	197, 246, 540, 575, 702, 716, 944, 1056
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	2 cut(s)	864, 1046
Tru9I	TTAA	2 cut(s)	864, 1046
TseFI	GTSAC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	438, 576, 680
XapI	RAATTY	4 cut(s)	197, 716, 944, 1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.