RLG00000027670

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016590
Physical Location & Seq
Forward (+)
13800031 .. 13801212
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027670

Sequence Viewer

Length: 1182 bp
ATGTCTCAACAGGTAGAGGAGGAGAGGGAACAGCCAAACATGGAAGAAGCCGATCATCAACATGATCATCAAGAGGAAGAAGTCATCATAGGCTGCAACGAACAACACAACAGCAACAACACCGCCACCACCACCACCACCACCACCACCAACAACAACATTATCATCAAGGGGAAGCGCACAAAGCGCCTTAGGCCTCAATCCCCCATCCCTTTCGCCGTCCCCACGAACTCGTCCACCGCTGATGGTGGTGGCCAAGGTGGCGGTGGTGGTGAGTGTAACAATACCACCAACTCGTCTCCCACCACCTCCACGGAGTTCCAGGATAGCACCGAGGAAGAGGAGGACATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTGCCCCAAGCCCATAACGATCGCAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACACCCCTCACCGCTGCTGTGGGGCCCGCCAAGATGGAGGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGCAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGTTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCGCCCGTTGGAGGACCAGCTAACCTGTCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAACCACAACAAAACCAACACCAACACCACCACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGACGATCATCATCATCGAGATCAATCCAAATTTGTGTTTGCACCCAAACAGCAGCAGCAACAACAACCGCAGCAGCAGCAACAAGAAAGGTTAAGAATTTTGGTGGATTGTCATTACTAA

Protein Analysis

394

Amino Acids

43.06

Weight (kDa)

6.34

Isoelectric Point (pI)

74.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 182 - 208 7.9e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 270 - 296 1.8e-12 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10470 AT5G04390
fragaria_vesca FvH4_7g18360
malus_domestica MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica Prupe.2G205700_v2.0.a1
pyrus_communis pycom07g16190
rosa_chinensis RchiOBHm_Chr1g0362171
rosa_laevigata RLG00000027670
rosa_rugosa Rorug01G0294800
rosa_samantha Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana Rw1G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 873, 883
AccB7I CCANNNNNTGG 1 cut(s) 592
AclWI GGATC 2 cut(s) 358, 1047
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 1091, 1158
AcyI GRCGYC 2 cut(s) 874, 884
AfaI GTAC 1 cut(s) 787
AfiI CCNNNNNNNGG 4 cut(s) 388, 592, 828, 893
AflIII ACRYGT 2 cut(s) 560, 729
AgsI TTSAA 1 cut(s) 706
AjiI CACGTC 2 cut(s) 561, 732
AjnI CCWGG 2 cut(s) 321, 465
AluBI AGCT 5 cut(s) 412, 530, 902, 920, 953
AluI AGCT 5 cut(s) 412, 530, 902, 920, 953
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 2 cut(s) 9, 303
AlwI GGATC 2 cut(s) 358, 1047
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 7 cut(s) 194, 253, 379, 497, 515, 852, 862
ApaI GGGCCC 1 cut(s) 501
ApoI RAATTY 2 cut(s) 1091, 1158
AspLEI GCGC 4 cut(s) 180, 189, 876, 886
AspS9I GGNCC 5 cut(s) 392, 497, 498, 515, 896
AsuC2I CCSGG 4 cut(s) 388, 389, 605, 881
AsuHPI GGTGA 4 cut(s) 284, 475, 593, 832
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 2 cut(s) 392, 896
AxyI CCTNAGG 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 501
BalI TGGCCA 1 cut(s) 255
BanI GGYRCC 2 cut(s) 873, 883
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 696, 1068
Bbv12I GWGCWC 1 cut(s) 821
BccI CCATC 4 cut(s) 215, 239, 502, 685
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 323, 467
BclI TGATCA 1 cut(s) 64
BcnI CCSGG 4 cut(s) 388, 389, 605, 881
BcoDI GTCTC 2 cut(s) 9, 303
BfoI RGCGCY 3 cut(s) 190, 877, 887
BglI GCCNNNNNGGC 1 cut(s) 261
Bme1390I CCNGG 6 cut(s) 323, 388, 389, 467, 605, 881
Bme18I GGWCC 2 cut(s) 392, 896
BmeT110I CYCGRG 1 cut(s) 387
BmgBI CACGTC 2 cut(s) 561, 732
BmgT120I GGNCC 5 cut(s) 392, 497, 498, 515, 896
BmiI GGNNCC 6 cut(s) 393, 498, 499, 516, 875, 885
BmrFI CCNGG 6 cut(s) 323, 388, 389, 467, 605, 881
BpiI GAAGAC 2 cut(s) 696, 1068
BplI GAGNNNNNCTC 2 cut(s) 827, 859
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 4 cut(s) 388, 389, 605, 881
BsaBI GATNNNNATC 2 cut(s) 1038, 1071
BsaHI GRCGYC 2 cut(s) 874, 884
BsaJI CCNNGG 7 cut(s) 256, 312, 333, 387, 388, 855, 945
BsaWI WCCGGW 2 cut(s) 567, 845
BsaXI ACNNNNNCTCC 4 cut(s) 719, 749, 907, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 388, 592, 828, 893
Bse118I RCCGGY 1 cut(s) 517
Bse21I CCTNAGG 1 cut(s) 191
Bse8I GATNNNNATC 2 cut(s) 1038, 1071
BseBI CCWGG 2 cut(s) 323, 467
BseDI CCNNGG 7 cut(s) 256, 312, 333, 387, 388, 855, 945
BseGI GGATG 4 cut(s) 207, 649, 688, 740
BseJI GATNNNNATC 2 cut(s) 1038, 1071
BseLI CCNNNNNNNGG 4 cut(s) 388, 592, 828, 893
BseRI GAGGAG 6 cut(s) 32, 35, 356, 727, 912, 915
BseSI GKGCMC 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 7 cut(s) 196, 255, 381, 499, 517, 854, 864
BshNI GGYRCC 2 cut(s) 873, 883
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 821
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 6 cut(s) 388, 518, 568, 604, 846, 880
BslFI GGGAC 2 cut(s) 206, 388
BslI CCNNNNNNNGG 4 cut(s) 388, 592, 828, 893
BsmAI GTCTC 2 cut(s) 9, 303
BsmBI CGTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 206, 388
BsmI GAATGC 1 cut(s) 557
BsnI GGCC 7 cut(s) 196, 255, 381, 499, 517, 854, 864
BsoBI CYCGRG 1 cut(s) 387
Bsp120I GGGCCC 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 501, 821
Bsp143I GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
BspANI GGCC 7 cut(s) 196, 255, 381, 499, 517, 854, 864
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 6 cut(s) 393, 498, 499, 516, 875, 885
BspPI GGATC 2 cut(s) 358, 1047
BspT107I GGYRCC 2 cut(s) 873, 883
BsrFI RCCGGY 1 cut(s) 517
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 7 cut(s) 256, 312, 333, 387, 388, 855, 945
BssMI GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
BssNI GRCGYC 2 cut(s) 874, 884
BssT1I CCWWGG 3 cut(s) 256, 855, 945
Bst2UI CCWGG 2 cut(s) 323, 467
Bst4CI ACNGT 1 cut(s) 934
Bst6I CTCTTC 2 cut(s) 333, 759
BstACI GRCGYC 2 cut(s) 874, 884
BstC8I GCNNGC 3 cut(s) 501, 519, 532
BstDEI CTNAG 2 cut(s) 191, 804
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 4 cut(s) 207, 649, 688, 740
BstH2I RGCGCY 3 cut(s) 190, 877, 887
BstHHI GCGC 4 cut(s) 180, 189, 876, 886
BstKTI GATC 7 cut(s) 55, 67, 366, 433, 1042, 1069, 1084
BstMAI GTCTC 2 cut(s) 9, 303
BstMBI GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 8 cut(s) 184, 186, 193, 261, 527, 825, 950, 1138
BstNI CCWGG 2 cut(s) 323, 467
BstNSI RCATGY 1 cut(s) 1024
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 6 cut(s) 321, 386, 387, 465, 603, 879
BstSLI GKGCMC 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 696, 1068
BstX2I RGATCY 1 cut(s) 1039
BstYI RGATCY 1 cut(s) 1039
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 7 cut(s) 196, 255, 381, 499, 517, 854, 864
BtgI CCRYGG 1 cut(s) 312
BtrI CACGTC 2 cut(s) 561, 732
BtsCI GGATG 4 cut(s) 207, 649, 688, 740
Cac8I GCNNGC 3 cut(s) 501, 519, 532
CciI TCATGA 1 cut(s) 811
CfoI GCGC 4 cut(s) 180, 189, 876, 886
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 5 cut(s) 392, 497, 498, 515, 896
Cfr9I CCCGGG 1 cut(s) 387
Csp6I GTAC 1 cut(s) 786
CviAII CATG 8 cut(s) 40, 62, 349, 712, 718, 812, 868, 1021
CviQI GTAC 1 cut(s) 786
DdeI CTNAG 2 cut(s) 191, 804
DinI GGCGCC 2 cut(s) 875, 885
DpnI GATC 7 cut(s) 54, 66, 365, 432, 1041, 1068, 1083
DpnII GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 333, 759
EarI CTCTTC 2 cut(s) 333, 759
EciI GGCGGA 1 cut(s) 848
Eco130I CCWWGG 3 cut(s) 256, 855, 945
Eco147I AGGCCT 2 cut(s) 196, 854
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 392, 896
Eco81I CCTNAGG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 387
Eco91I GGTNACC 1 cut(s) 599
EcoO109I RGGNCCY 2 cut(s) 392, 497
EcoO65I GGTNACC 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 321, 465
EcoT14I CCWWGG 3 cut(s) 256, 855, 945
EcoT38I GRGCYC 1 cut(s) 501
EgeI GGCGCC 2 cut(s) 875, 885
EheI GGCGCC 2 cut(s) 875, 885
ErhI CCWWGG 3 cut(s) 256, 855, 945
Esp3I CGTCTC 1 cut(s) 303
FaeI CATG 8 cut(s) 43, 65, 352, 715, 721, 815, 871, 1024
FaqI GGGAC 2 cut(s) 206, 388
FatI CATG 8 cut(s) 39, 61, 348, 711, 717, 811, 867, 1020
FauI CCCGC 3 cut(s) 508, 527, 821
FbaI TGATCA 1 cut(s) 64
FokI GGATG 4 cut(s) 194, 656, 695, 727
FriOI GRGCYC 1 cut(s) 501
GlaI GCGC 4 cut(s) 179, 188, 875, 885
HaeII RGCGCY 3 cut(s) 190, 877, 887
HaeIII GGCC 7 cut(s) 196, 255, 381, 499, 517, 854, 864
HapII CCGG 6 cut(s) 388, 518, 568, 604, 846, 880
HhaI GCGC 4 cut(s) 180, 189, 876, 886
Hin1I GRCGYC 2 cut(s) 874, 884
Hin1II CATG 8 cut(s) 43, 65, 352, 715, 721, 815, 871, 1024
Hin6I GCGC 4 cut(s) 178, 187, 874, 884
HinP1I GCGC 4 cut(s) 178, 187, 874, 884
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HinfI GANTC 2 cut(s) 462, 610
HpaII CCGG 6 cut(s) 388, 518, 568, 604, 846, 880
HphI GGTGA 4 cut(s) 284, 475, 593, 832
Hpy166II GTNNAC 3 cut(s) 237, 840, 915
Hpy188I TCNGA 2 cut(s) 459, 682
Hpy188III TCNNGA 5 cut(s) 71, 706, 781, 812, 1079
Hpy8I GTNNAC 3 cut(s) 237, 840, 915
HpyAV CCTTC 3 cut(s) 405, 588, 1058
HpyCH4III ACNGT 1 cut(s) 934
HpyCH4IV ACGT 2 cut(s) 560, 731
HpyCH4V TGCA 3 cut(s) 96, 555, 1103
HpyF10VI GCNNNNNNNGC 8 cut(s) 184, 186, 193, 261, 527, 825, 950, 1138
HpyF3I CTNAG 2 cut(s) 191, 804
HpySE526I ACGT 2 cut(s) 560, 731
Hsp92I GRCGYC 2 cut(s) 874, 884
Hsp92II CATG 8 cut(s) 43, 65, 352, 715, 721, 815, 871, 1024
HspAI GCGC 4 cut(s) 178, 187, 874, 884
KasI GGCGCC 2 cut(s) 873, 883
KroI GCCGGC 1 cut(s) 517
KroNI GCCGGC 1 cut(s) 519
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
LmnI GCTCC 3 cut(s) 824, 925, 958
MaeII ACGT 2 cut(s) 560, 731
MaeIII GTNAC 6 cut(s) 278, 563, 599, 611, 672, 764
MalI GATC 7 cut(s) 54, 66, 365, 432, 1041, 1068, 1083
MboI GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
MboII GAAGA 8 cut(s) 56, 89, 350, 390, 698, 701, 746, 1073
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 2 cut(s) 501, 821
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 5 cut(s) 355, 663, 698, 1091, 1158
MluNI TGGCCA 1 cut(s) 255
Mly113I GGCGCC 2 cut(s) 874, 884
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 3 cut(s) 437, 871, 953
Mox20I TGGCCA 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 517
MscI TGGCCA 1 cut(s) 255
MseI TTAA 2 cut(s) 1004, 1154
MslI CAYNNNNRTG 2 cut(s) 60, 716
Msp20I TGGCCA 1 cut(s) 255
MspA1I CMGCKG 3 cut(s) 242, 488, 530
MspI CCGG 6 cut(s) 388, 518, 568, 604, 846, 880
MspR9I CCNGG 6 cut(s) 323, 388, 389, 467, 605, 881
Mva1269I GAATGC 1 cut(s) 557
MvaI CCWGG 2 cut(s) 323, 467
MwoI GCNNNNNNNGC 8 cut(s) 184, 186, 193, 261, 527, 825, 950, 1138
NaeI GCCGGC 1 cut(s) 519
NarI GGCGCC 2 cut(s) 874, 884
NciI CCSGG 4 cut(s) 388, 389, 605, 881
NdeII GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
NgoMIV GCCGGC 1 cut(s) 517
NlaIII CATG 8 cut(s) 43, 65, 352, 715, 721, 815, 871, 1024
NlaIV GGNNCC 6 cut(s) 393, 498, 499, 516, 875, 885
NmuCI GTSAC 2 cut(s) 599, 611
NspI RCATGY 1 cut(s) 1024
PagI TCATGA 1 cut(s) 811
PceI AGGCCT 2 cut(s) 196, 854
PctI GAATGC 1 cut(s) 557
PdiI GCCGGC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 592
PfoI TCCNGGA 2 cut(s) 321, 465
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 618
PluTI GGCGCC 2 cut(s) 877, 887
PpsI GAGTC 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 321, 465
PspEI GGTNACC 1 cut(s) 599
PspGI CCWGG 2 cut(s) 321, 465
PspN4I GGNNCC 6 cut(s) 393, 498, 499, 516, 875, 885
PspOMI GGGCCC 1 cut(s) 497
PspPI GGNCC 5 cut(s) 392, 497, 498, 515, 896
PspPPI RGGWCCY 1 cut(s) 392
PsuI RGATCY 1 cut(s) 1039
PvuI CGATCG 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 530
RsaI GTAC 1 cut(s) 787
RsaNI GTAC 1 cut(s) 786
RseI CAYNNNNRTG 2 cut(s) 60, 716
SaqAI TTAA 2 cut(s) 1004, 1154
Sau3AI GATC 7 cut(s) 52, 64, 363, 430, 1039, 1066, 1081
Sau96I GGNCC 5 cut(s) 392, 497, 498, 515, 896
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 6 cut(s) 323, 388, 389, 467, 605, 881
SduI GDGCHC 2 cut(s) 501, 821
SfoI GGCGCC 2 cut(s) 875, 885
SinI GGWCC 2 cut(s) 392, 896
SmaI CCCGGG 1 cut(s) 389
SmiMI CAYNNNNRTG 2 cut(s) 60, 716
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
Sse9I AATT 5 cut(s) 355, 663, 698, 1091, 1158
SseBI AGGCCT 2 cut(s) 196, 854
SspDI GGCGCC 2 cut(s) 873, 883
StuI AGGCCT 2 cut(s) 196, 854
StyD4I CCNGG 6 cut(s) 321, 386, 387, 465, 603, 879
StyI CCWWGG 3 cut(s) 256, 855, 945
TaaI ACNGT 1 cut(s) 934
TaiI ACGT 2 cut(s) 563, 734
TaqI TCGA 1 cut(s) 1078
TasI AATT 5 cut(s) 355, 663, 698, 1091, 1158
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 1004, 1154
Tru9I TTAA 2 cut(s) 1004, 1154
TseFI GTSAC 2 cut(s) 599, 611
Tsp45I GTSAC 2 cut(s) 599, 611
TspDTI ATGAA 6 cut(s) 564, 699, 728, 734, 746, 800
TspGWI ACGGA 1 cut(s) 329
TspMI CCCGGG 1 cut(s) 387
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 392, 896
XapI RAATTY 2 cut(s) 1091, 1158
XceI RCATGY 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 2 cut(s) 263, 593
XmaI CCCGGG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.