Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Forward (+)

41036232 .. 41038497

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0294800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGAAGTTTATTCTGAGATTGGATTTGCATGATGACAAAGCCAAGCAGAAGGCATTGAAGACAGTCTCTACTCTTTCAGGCATTGATTCCATCGCCATGGACATGAAGGAGAAGAAACTAACAGTGATCGGGTCGGTGGATCCAGTGAATGTGGTGAGCAAATTGCGCAAGTATTGGCCAACAACAGATATAATCTCAGTAGGGCCAGCAGTAGAGCCTAAGAAAGAGGAGCCAAAGAAGGAAGAAGCAAAGAAAGAAGAAGGAAAGAAGGAAGGAGAGGAAGCGAAGAAAGAAGGGGAAGAGGCGAAGAAGGAGGAACCCAAGAAAGAGGAGGAGAAGAAAGAAGGAGGAGGAGAGGAAGCTAAGAAAGAAGAGCCAAAGAAAGAGGAAGAGAAGAAAGAAGAAGAGAAGAAGAAAGAGGTTCCTCCTCCAGACCCCGTCTTAGAGCTTGTCAAGGCTTACAAAGCATACAACCCTCACATGACCACTTATTACTATGTGCAAAGCATGGAAGAGAATCCAAATGCTTGTGTTATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

181

Amino Acids

20.65

Weight (kDa)

5.97

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 58	6.1e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AclWI	GGATC	2 cut(s)	137, 150
AcoI	YGGCCR	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	2 cut(s)	365, 451
AluI	AGCT	2 cut(s)	365, 451
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	2 cut(s)	179, 206
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	4 cut(s)	144, 234, 321, 426
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	8, 213
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	6 cut(s)	245, 347, 350, 366, 369, 420
BshFI	GGCC	2 cut(s)	181, 208
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	181, 208
Bsp143I	GATC	2 cut(s)	129, 142
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	2 cut(s)	181, 208
BspCNI	CTCAG	2 cut(s)	9, 212
BspLI	GGNNCC	4 cut(s)	144, 234, 321, 426
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	129, 142
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	67, 127
Bst6I	CTCTTC	5 cut(s)	297, 369, 387, 402, 510
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	5 cut(s)	17, 199, 222, 366, 445
BstDSI	CCRYGG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	132, 145
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	2 cut(s)	129, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 467
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	181, 208
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	132, 153
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	206
CviAII	CATG	5 cut(s)	32, 100, 106, 484, 511
CviJI	RGCY	9 cut(s)	44, 181, 208, 220, 235, 365, 379, 451, 461
CviKI_1	RGCY	9 cut(s)	44, 181, 208, 220, 235, 365, 379, 451, 461
DdeI	CTNAG	5 cut(s)	17, 199, 222, 366, 445
DpnI	GATC	2 cut(s)	131, 144
DpnII	GATC	2 cut(s)	129, 142
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	5 cut(s)	297, 369, 387, 402, 510
EarI	CTCTTC	5 cut(s)	297, 369, 387, 402, 510
Eco130I	CCWWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	35, 103, 109, 487, 514
FaiI	YATR	8 cut(s)	33, 101, 107, 194, 472, 485, 501, 512
FatI	CATG	5 cut(s)	31, 99, 105, 483, 510
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	181, 208
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	35, 103, 109, 487, 514
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	89, 520
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	434
HpyAV	CCTTC	9 cut(s)	46, 103, 235, 257, 265, 269, 290, 307, 341
HpyCH4III	ACNGT	2 cut(s)	67, 127
HpyCH4V	TGCA	2 cut(s)	31, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 467
HpyF3I	CTNAG	5 cut(s)	17, 199, 222, 366, 445
Hsp92II	CATG	5 cut(s)	35, 103, 109, 487, 514
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	129, 142
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	4 cut(s)	66, 159, 222, 447
MalI	GATC	2 cut(s)	131, 144
MboI	GATC	2 cut(s)	129, 142
MflI	RGATCY	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MslI	CAYNNNNRTG	2 cut(s)	98, 104
Msp20I	TGGCCA	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	168, 467
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	129, 142
NlaIII	CATG	5 cut(s)	35, 103, 109, 487, 514
NlaIV	GGNNCC	4 cut(s)	144, 234, 321, 426
NsbI	TGCGCA	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	89, 520
PflFI	GACNNNGTC	1 cut(s)	440
PspN4I	GGNNCC	4 cut(s)	144, 234, 321, 426
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	440
RseI	CAYNNNNRTG	2 cut(s)	98, 104
SapI	GCTCTTC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	129, 142
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	3 cut(s)	367, 426, 453
SmiMI	CAYNNNNRTG	2 cut(s)	98, 104
Sse9I	AATT	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	67, 127
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	89, 520
TscAI	CASTG	2 cut(s)	132, 153
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	2 cut(s)	132, 153
Tth111I	GACNNNGTC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.