AT5G04390

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016590
Physical Location & Seq
Forward (+)
1238820 .. 1240517
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04390.1

Sequence Viewer

Length: 1089 bp
ATGGAAGCGTTCGAAGAGGCCACAAAGGAGCAATCTTTGATCCTTAAAGGGAAGCGGACGAAGCGACAACGTCCACAATCTCCTATTCCTTTCTCTATCTCCCCTCCTATAGTTTCTACCCCGGAAAACAACATGGAAGAAGAATACACTGATCTTGATTCCAAGGACAATGCTTTAGGAAATGATGAGGGCAACCACAAAAAGGATGGTGTGATCACATCTTCATCTTCATCAGCCTCTTGGTCCTCCCAAAACAATCACACATTGAAGGCAGCAGAAGACGAGGAAGATCAAGACATAGCCAATTGTTTGATACTCCTTGCCCAAGGACACTCTCTTCCCCACAACAATCACCACTTACCAAACAGCAACAACAACAACACGTATAGATTTACCAGCAGGAGGTTTCTAGAAACTTCTTCTTCTAACAGTGGTGGAAAAGCCGGTTACTACGTTTATCAGTGCAAGACATGTGACCGGACCTTCCCTTCTTTTCAGGCTTTAGGTGGCCACAGAGCTAGCCACAAGAAACCTAAAGCCGCCTCTTTTTACTCCAACCTTGACCTCAAGAAGAACACGTATGCAAACGACGCCGTTTCACTTGTACACACAACCACAACTGTTTTCAAGAACAATAACAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCATGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAGACGGCATAGAGGAGCTGTGGTTGTTCCGGCGGTGATAGCCCCCACCGTGACGGTGGCCACGGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGACGGTCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGACGGTCGTGTCACTGGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAGCTTTGCTTCAAAGCAAAATCACGAACAAGAACATCAACAGAAGAAGCAAAGAGAAGAACCAAAGTCTCTTGTCTTGTCTGCTCCTACTTTGGTGGATTGCCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

362

Amino Acids

39.79

Weight (kDa)

7.72

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 152 - 178 2.1e-11 C2H2-type zinc finger
zf-C2H2_6 PF13912 228 - 253 1.1e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016590)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10470 AT5G04390
fragaria_vesca FvH4_7g18360
malus_domestica MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica Prupe.2G205700_v2.0.a1
pyrus_communis pycom07g16190
rosa_chinensis RchiOBHm_Chr1g0362171
rosa_laevigata RLG00000027670
rosa_rugosa Rorug01G0294800
rosa_samantha Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana Rw1G027100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 916
AccIII TCCGGA 1 cut(s) 719
AciI CCGC 4 cut(s) 55, 540, 776, 812
AclWI GGATC 3 cut(s) 34, 882, 939
AcoI YGGCCR 4 cut(s) 508, 736, 801, 813
AcyI GRCGYC 1 cut(s) 591
AfaI GTAC 2 cut(s) 606, 659
AfiI CCNNNNNNNGG 2 cut(s) 202, 402
AflIII ACRYGT 3 cut(s) 381, 470, 576
AgsI TTSAA 3 cut(s) 268, 628, 990
AluBI AGCT 5 cut(s) 518, 761, 826, 905, 981
AluI AGCT 5 cut(s) 518, 761, 826, 905, 981
Alw26I GTCTC 2 cut(s) 739, 1050
AlwI GGATC 3 cut(s) 34, 882, 939
Aor13HI TCCGGA 1 cut(s) 719
AoxI GGCC 5 cut(s) 18, 508, 736, 801, 813
ApeKI GCWGC 2 cut(s) 272, 809
AspS9I GGNCC 2 cut(s) 243, 480
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 344, 790
AsuII TTCGAA 1 cut(s) 12
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 2 cut(s) 243, 480
AxyI CCTNAGG 1 cut(s) 730
BalI TGGCCA 3 cut(s) 510, 738, 803
BbsI GAAGAC 2 cut(s) 285, 828
BbvI GCAGC 2 cut(s) 284, 796
BccI CCATC 1 cut(s) 200
BceAI ACGGC 3 cut(s) 578, 764, 822
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 739, 1050
BfaI CTAG 3 cut(s) 410, 519, 906
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 4 cut(s) 273, 540, 810, 813
BlsI GCNGC 4 cut(s) 274, 541, 811, 814
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 2 cut(s) 243, 480
BmgT120I GGNCC 2 cut(s) 243, 480
BmiI GGNNCC 1 cut(s) 706
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 1 cut(s) 876
BmtI GCTAGC 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 285, 828
Bpu14I TTCGAA 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 2 cut(s) 384, 579
BsaBI GATNNNNATC 3 cut(s) 930, 936, 960
BsaHI GRCGYC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 120, 162, 325, 804
BsaWI WCCGGW 3 cut(s) 477, 719, 949
BsaXI ACNNNNNCTCC 2 cut(s) 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 402
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 927
Bse21I CCTNAGG 1 cut(s) 730
Bse8I GATNNNNATC 3 cut(s) 930, 936, 960
BseAI TCCGGA 1 cut(s) 719
BseDI CCNNGG 4 cut(s) 120, 162, 325, 804
BseGI GGATG 1 cut(s) 211
BseJI GATNNNNATC 3 cut(s) 930, 936, 960
BseLI CCNNNNNNNGG 2 cut(s) 202, 402
BseNI ACTGG 1 cut(s) 927
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 2 cut(s) 284, 796
Bsh1285I CGRYCG 1 cut(s) 915
BshFI GGCC 5 cut(s) 20, 510, 738, 803, 815
BsiEI CGRYCG 1 cut(s) 915
BsiSI CCGG 6 cut(s) 122, 444, 478, 720, 773, 950
BslI CCNNNNNNNGG 2 cut(s) 202, 402
BsmAI GTCTC 2 cut(s) 739, 1050
BsmBI CGTCTC 1 cut(s) 739
BsnI GGCC 5 cut(s) 20, 510, 738, 803, 815
Bsp119I TTCGAA 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 719
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
BspACI CCGC 4 cut(s) 55, 540, 776, 812
BspANI GGCC 5 cut(s) 20, 510, 738, 803, 815
BspEI TCCGGA 1 cut(s) 719
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 1 cut(s) 706
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 3 cut(s) 34, 882, 939
BspT104I TTCGAA 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 443
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 1 cut(s) 927
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 4 cut(s) 120, 162, 325, 804
BssMI GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
BssNI GRCGYC 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 162, 325
Bst4CI ACNGT 9 cut(s) 431, 622, 641, 662, 793, 799, 834, 866, 913
Bst6I CTCTTC 2 cut(s) 9, 342
BstACI GRCGYC 1 cut(s) 591
BstAUI TGTACA 1 cut(s) 604
BstBAI YACGTR 2 cut(s) 384, 579
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 520, 891
BstDEI CTNAG 1 cut(s) 730
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 8 cut(s) 42, 154, 216, 292, 647, 853, 877, 934
BstMAI GTCTC 2 cut(s) 739, 1050
BstMBI GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
BstMCI CGRYCG 1 cut(s) 915
BstMWI GCNNNNNNNGC 5 cut(s) 61, 590, 782, 809, 890
BstNSI RCATGY 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 284, 796
BstV2I GAAGAC 2 cut(s) 285, 828
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
Bsu36I CCTNAGG 1 cut(s) 730
BsuRI GGCC 5 cut(s) 20, 510, 738, 803, 815
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 5 cut(s) 147, 436, 467, 830, 920
Cac8I GCNNGC 2 cut(s) 520, 891
CciI TCATGA 1 cut(s) 685
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 2 cut(s) 243, 480
CseI GACGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 605, 658
CviAII CATG 4 cut(s) 133, 471, 686, 742
CviQI GTAC 2 cut(s) 605, 658
DdeI CTNAG 1 cut(s) 730
DpnI GATC 8 cut(s) 41, 153, 215, 291, 646, 852, 876, 933
DpnII GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
DrdI GACNNNNNNGTC 1 cut(s) 916
DseDI GACNNNNNNGTC 1 cut(s) 916
EaeI YGGCCR 4 cut(s) 508, 736, 801, 813
Eam1104I CTCTTC 2 cut(s) 9, 342
EarI CTCTTC 2 cut(s) 9, 342
Eco130I CCWWGG 2 cut(s) 162, 325
Eco47I GGWCC 2 cut(s) 243, 480
Eco81I CCTNAGG 1 cut(s) 730
EcoT14I CCWWGG 2 cut(s) 162, 325
ErhI CCWWGG 2 cut(s) 162, 325
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 4 cut(s) 136, 474, 689, 745
FaiI YATR 9 cut(s) 110, 134, 299, 387, 472, 582, 687, 743, 753
FatI CATG 4 cut(s) 132, 470, 685, 741
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 4 cut(s) 273, 540, 810, 813
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 4 cut(s) 273, 540, 810, 813
FspBI CTAG 3 cut(s) 410, 519, 906
GluI GCNGC 4 cut(s) 273, 540, 810, 813
HaeIII GGCC 5 cut(s) 20, 510, 738, 803, 815
HapII CCGG 6 cut(s) 122, 444, 478, 720, 773, 950
HgaI GACGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 591
Hin1II CATG 4 cut(s) 136, 474, 689, 745
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HinfI GANTC 5 cut(s) 158, 696, 937, 961, 975
HpaII CCGG 6 cut(s) 122, 444, 478, 720, 773, 950
HphI GGTGA 2 cut(s) 344, 790
Hpy166II GTNNAC 5 cut(s) 74, 607, 658, 714, 970
Hpy188I TCNGA 2 cut(s) 862, 936
Hpy188III TCNNGA 9 cut(s) 155, 293, 410, 568, 628, 686, 720, 872, 1001
Hpy8I GTNNAC 5 cut(s) 74, 607, 658, 714, 970
Hpy99I CGWCG 1 cut(s) 593
HpyAV CCTTC 3 cut(s) 262, 493, 498
HpyCH4III ACNGT 9 cut(s) 431, 622, 641, 662, 793, 799, 834, 866, 913
HpyCH4IV ACGT 5 cut(s) 70, 383, 453, 578, 716
HpyCH4V TGCA 2 cut(s) 465, 584
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 590, 782, 809, 890
HpyF3I CTNAG 1 cut(s) 730
HpySE526I ACGT 5 cut(s) 70, 383, 453, 578, 716
Hsp92I GRCGYC 1 cut(s) 591
Hsp92II CATG 4 cut(s) 136, 474, 689, 745
Kpn2I TCCGGA 1 cut(s) 719
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
LmnI GCTCC 5 cut(s) 28, 704, 758, 823, 1066
Lsp1109I GCAGC 2 cut(s) 284, 796
LweI GCATC 1 cut(s) 876
MaeI CTAG 3 cut(s) 410, 519, 906
MaeII ACGT 5 cut(s) 70, 383, 453, 578, 716
MaeIII GTNAC 4 cut(s) 446, 473, 793, 918
MalI GATC 8 cut(s) 41, 153, 215, 291, 646, 852, 876, 933
MboI GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
MfeI CAATTG 1 cut(s) 304
MflI RGATCY 1 cut(s) 931
MlsI TGGCCA 3 cut(s) 510, 738, 803
MluCI AATT 1 cut(s) 304
MluNI TGGCCA 3 cut(s) 510, 738, 803
MmeI TCCRAC 1 cut(s) 579
Mox20I TGGCCA 3 cut(s) 510, 738, 803
MroI TCCGGA 1 cut(s) 719
MscI TGGCCA 3 cut(s) 510, 738, 803
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 690
Msp20I TGGCCA 3 cut(s) 510, 738, 803
MspI CCGG 6 cut(s) 122, 444, 478, 720, 773, 950
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 304
MwoI GCNNNNNNNGC 5 cut(s) 61, 590, 782, 809, 890
NciI CCSGG 1 cut(s) 122
NdeII GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 4 cut(s) 136, 474, 689, 745
NlaIV GGNNCC 1 cut(s) 706
NmeAIII GCCGAG 1 cut(s) 733
NmuCI GTSAC 3 cut(s) 473, 793, 918
NspI RCATGY 1 cut(s) 474
NspV TTCGAA 1 cut(s) 12
PagI TCATGA 1 cut(s) 685
PciI ACATGT 1 cut(s) 470
PfeI GAWTC 5 cut(s) 158, 696, 937, 961, 975
PflFI GACNNNGTC 1 cut(s) 69
PkrI GCNGC 4 cut(s) 274, 541, 811, 814
Ppu21I YACGTR 2 cut(s) 384, 579
PscI ACATGT 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 706
PspPI GGNCC 2 cut(s) 243, 480
PsuI RGATCY 1 cut(s) 931
PsyI GACNNNGTC 1 cut(s) 69
RsaI GTAC 2 cut(s) 606, 659
RsaNI GTAC 2 cut(s) 605, 658
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 273, 540, 810, 813
Sau3AI GATC 8 cut(s) 39, 151, 213, 289, 644, 850, 874, 931
Sau96I GGNCC 2 cut(s) 243, 480
ScrFI CCNGG 1 cut(s) 122
SfaNI GCATC 1 cut(s) 876
SfcI CTRYAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 12
SinI GGWCC 2 cut(s) 243, 480
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 1 cut(s) 304
SsiI CCGC 4 cut(s) 55, 540, 776, 812
SspMI CTAG 3 cut(s) 410, 519, 906
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 2 cut(s) 162, 325
TaaI ACNGT 9 cut(s) 431, 622, 641, 662, 793, 799, 834, 866, 913
TaiI ACGT 5 cut(s) 73, 386, 456, 581, 719
TaqI TCGA 3 cut(s) 12, 839, 849
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 604
TauI GCSGC 2 cut(s) 542, 815
TfiI GAWTC 5 cut(s) 158, 696, 937, 961, 975
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 5 cut(s) 154, 436, 467, 837, 927
TseFI GTSAC 3 cut(s) 473, 793, 918
TseI GCWGC 2 cut(s) 272, 809
Tsp45I GTSAC 3 cut(s) 473, 793, 918
TspDTI ATGAA 4 cut(s) 213, 219, 674, 702
TspGWI ACGGA 2 cut(s) 836, 987
TspRI CASTG 5 cut(s) 154, 436, 467, 837, 927
Tth111I GACNNNGTC 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 243, 480
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 474
XcmI CCANNNNNNNNNTGG 2 cut(s) 203, 796
XspI CTAG 3 cut(s) 410, 519, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.