Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

52304321 .. 52308880

Gene Structure 4560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG297500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTGCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACGCCCCTCGCAGCTGCTGTGGGGCCCGCCAAGATGGCTGGGCCGGCTGCCGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGCAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCCACTTTCTCTTCATTTGAGTAACAGGGGGCTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCTCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACATATACGAGATGTGAAGTCATTTATTGTATCGGTTCTTCTTGTGAGGTCAAGGATGAATGTGCCAACGTGAGTGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

221

Amino Acids

23.42

Weight (kDa)

8.87

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	66 - 92	3.7e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	154 - 180	8.4e-13	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	244
AciI	CCGC	5 cut(s)	153, 177, 186, 480, 485
AclWI	GGATC	1 cut(s)	10
AcyI	GRCGYC	1 cut(s)	526
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	4 cut(s)	40, 244, 480, 545
AflIII	ACRYGT	2 cut(s)	212, 381
AgsI	TTSAA	1 cut(s)	358
AjiI	CACGTC	2 cut(s)	213, 384
AjnI	CCWGG	2 cut(s)	117, 558
AluBI	AGCT	5 cut(s)	64, 140, 182, 554, 572
AluI	AGCT	5 cut(s)	64, 140, 182, 554, 572
Alw21I	GWGCWC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	5 cut(s)	31, 149, 167, 504, 514
ApaI	GGGCCC	1 cut(s)	153
ApeKI	GCWGC	6 cut(s)	64, 137, 140, 173, 179, 281
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	5 cut(s)	44, 149, 150, 167, 548
AsuC2I	CCSGG	4 cut(s)	40, 41, 257, 533
AsuHPI	GGTGA	2 cut(s)	245, 484
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	44, 548
BaeGI	GKGCMC	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	2 cut(s)	153, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	604, 636
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	473
BbvI	GCAGC	6 cut(s)	51, 127, 149, 160, 191, 293
BccI	CCATC	2 cut(s)	154, 337
BciT130I	CCWGG	2 cut(s)	119, 560
BcnI	CCSGG	4 cut(s)	40, 41, 257, 533
BfoI	RGCGCY	1 cut(s)	529
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	7 cut(s)	65, 138, 141, 174, 177, 180, 282
BlsI	GCNGC	7 cut(s)	66, 139, 142, 175, 178, 181, 283
Bme1390I	CCNGG	6 cut(s)	40, 41, 119, 257, 533, 560
Bme18I	GGWCC	2 cut(s)	44, 548
BmeT110I	CYCGRG	1 cut(s)	39
BmgBI	CACGTC	2 cut(s)	213, 384
BmgT120I	GGNCC	5 cut(s)	44, 149, 150, 167, 548
BmiI	GGNNCC	5 cut(s)	45, 150, 151, 527, 537
BmrFI	CCNGG	6 cut(s)	40, 41, 119, 257, 533, 560
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	4 cut(s)	40, 41, 257, 533
BsaHI	GRCGYC	1 cut(s)	526
BsaJI	CCNNGG	4 cut(s)	39, 40, 507, 558
BsaWI	WCCGGW	2 cut(s)	219, 497
BsaXI	ACNNNNNCTCC	4 cut(s)	371, 401, 559, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 244, 480, 545
Bse118I	RCCGGY	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	119, 560
BseDI	CCNNGG	4 cut(s)	39, 40, 507, 558
BseGI	GGATG	4 cut(s)	301, 340, 392, 643
BseLI	CCNNNNNNNGG	4 cut(s)	40, 244, 480, 545
BseRI	GAGGAG	3 cut(s)	379, 564, 567
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	6 cut(s)	51, 127, 149, 160, 191, 293
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	5 cut(s)	33, 151, 169, 506, 516
BshNI	GGYRCC	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	473
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	6 cut(s)	40, 170, 220, 256, 498, 532
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	4 cut(s)	40, 244, 480, 545
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	5 cut(s)	33, 151, 169, 506, 516
BsoBI	CYCGRG	1 cut(s)	39
Bsp120I	GGGCCC	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	153, 473, 538
Bsp143I	GATC	2 cut(s)	15, 82
BspACI	CCGC	5 cut(s)	153, 177, 186, 480, 485
BspANI	GGCC	5 cut(s)	33, 151, 169, 506, 516
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	5 cut(s)	45, 150, 151, 527, 537
BspPI	GGATC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	169
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	39, 40, 507, 558
BssMI	GATC	2 cut(s)	15, 82
BssNI	GRCGYC	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	119, 560
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	526
BstC8I	GCNNGC	3 cut(s)	153, 171, 184
BstDEI	CTNAG	1 cut(s)	456
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	301, 340, 392, 643
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	2 cut(s)	18, 85
BstMBI	GATC	2 cut(s)	15, 82
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 477, 560, 569
BstNI	CCWGG	2 cut(s)	119, 560
BstPI	GGTNACC	1 cut(s)	251
BstSCI	CCNGG	6 cut(s)	38, 39, 117, 255, 531, 558
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	6 cut(s)	51, 127, 149, 160, 191, 293
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	33, 151, 169, 506, 516
BtrI	CACGTC	2 cut(s)	213, 384
BtsCI	GGATG	4 cut(s)	301, 340, 392, 643
Cac8I	GCNNGC	3 cut(s)	153, 171, 184
CaiI	CAGNNNCTG	1 cut(s)	143
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	5 cut(s)	44, 149, 150, 167, 548
Cfr9I	CCCGGG	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	4 cut(s)	364, 370, 464, 520
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	456
DinI	GGCGCC	1 cut(s)	527
DpnI	GATC	2 cut(s)	17, 84
DpnII	GATC	2 cut(s)	15, 82
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	506
Eco24I	GRGCYC	2 cut(s)	153, 538
Eco47I	GGWCC	2 cut(s)	44, 548
Eco88I	CYCGRG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	251
EcoO109I	RGGNCCY	2 cut(s)	44, 149
EcoO65I	GGTNACC	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	117, 558
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	2 cut(s)	153, 538
EgeI	GGCGCC	1 cut(s)	527
EheI	GGCGCC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	4 cut(s)	367, 373, 467, 523
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	363, 369, 463, 519
FauI	CCCGC	3 cut(s)	160, 179, 473
Fnu4HI	GCNGC	7 cut(s)	65, 138, 141, 174, 177, 180, 282
FokI	GGATG	4 cut(s)	308, 347, 379, 650
FriOI	GRGCYC	2 cut(s)	153, 538
Fsp4HI	GCNGC	7 cut(s)	65, 138, 141, 174, 177, 180, 282
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	7 cut(s)	65, 138, 141, 174, 177, 180, 282
GsaI	CCCAGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	5 cut(s)	33, 151, 169, 506, 516
HapII	CCGG	6 cut(s)	40, 170, 220, 256, 498, 532
HhaI	GCGC	1 cut(s)	528
Hin1I	GRCGYC	1 cut(s)	526
Hin1II	CATG	4 cut(s)	367, 373, 467, 523
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	2 cut(s)	114, 262
HpaII	CCGG	6 cut(s)	40, 170, 220, 256, 498, 532
HphI	GGTGA	2 cut(s)	245, 484
Hpy166II	GTNNAC	2 cut(s)	492, 567
Hpy188I	TCNGA	2 cut(s)	111, 334
Hpy188III	TCNNGA	3 cut(s)	358, 433, 464
Hpy8I	GTNNAC	2 cut(s)	492, 567
HpyAV	CCTTC	2 cut(s)	57, 240
HpyCH4IV	ACGT	3 cut(s)	212, 383, 651
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 477, 560, 569
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	3 cut(s)	212, 383, 651
Hsp92I	GRCGYC	1 cut(s)	526
Hsp92II	CATG	4 cut(s)	367, 373, 467, 523
HspAI	GCGC	1 cut(s)	526
KasI	GGCGCC	1 cut(s)	525
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	15, 82
LmnI	GCTCC	3 cut(s)	476, 541, 577
Lsp1109I	GCAGC	6 cut(s)	51, 127, 149, 160, 191, 293
MaeII	ACGT	3 cut(s)	212, 383, 651
MaeIII	GTNAC	5 cut(s)	215, 251, 263, 324, 416
MalI	GATC	2 cut(s)	17, 84
MboI	GATC	2 cut(s)	15, 82
MboII	GAAGA	5 cut(s)	42, 350, 353, 398, 612
MhlI	GDGCHC	3 cut(s)	153, 473, 538
MluCI	AATT	4 cut(s)	7, 315, 350, 659
Mly113I	GGCGCC	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	3 cut(s)	89, 523, 605
MroNI	GCCGGC	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	140, 182
MspI	CCGG	6 cut(s)	40, 170, 220, 256, 498, 532
MspR9I	CCNGG	6 cut(s)	40, 41, 119, 257, 533, 560
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	2 cut(s)	119, 560
MwoI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 477, 560, 569
NaeI	GCCGGC	1 cut(s)	171
NarI	GGCGCC	1 cut(s)	526
NciI	CCSGG	4 cut(s)	40, 41, 257, 533
NdeII	GATC	2 cut(s)	15, 82
NgoMIV	GCCGGC	1 cut(s)	169
NlaIII	CATG	4 cut(s)	367, 373, 467, 523
NlaIV	GGNNCC	5 cut(s)	45, 150, 151, 527, 537
NmuCI	GTSAC	2 cut(s)	251, 263
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	506
PctI	GAATGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	7 cut(s)	66, 139, 142, 175, 178, 181, 283
PleI	GAGTC	1 cut(s)	270
PluTI	GGCGCC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	270
PpuMI	RGGWCCY	1 cut(s)	44
PsiI	TTATAA	1 cut(s)	664
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	117, 558
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	2 cut(s)	117, 558
PspN4I	GGNNCC	5 cut(s)	45, 150, 151, 527, 537
PspOMI	GGGCCC	1 cut(s)	149
PspPI	GGNCC	5 cut(s)	44, 149, 150, 167, 548
PspPPI	RGGWCCY	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	2 cut(s)	140, 182
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	7 cut(s)	65, 138, 141, 174, 177, 180, 282
Sau3AI	GATC	2 cut(s)	15, 82
Sau96I	GGNCC	5 cut(s)	44, 149, 150, 167, 548
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	6 cut(s)	40, 41, 119, 257, 533, 560
SduI	GDGCHC	3 cut(s)	153, 473, 538
SfoI	GGCGCC	1 cut(s)	527
SinI	GGWCC	2 cut(s)	44, 548
SmaI	CCCGGG	1 cut(s)	41
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	4 cut(s)	7, 315, 350, 659
SseBI	AGGCCT	1 cut(s)	506
SsiI	CCGC	5 cut(s)	153, 177, 186, 480, 485
SspDI	GGCGCC	1 cut(s)	525
StuI	AGGCCT	1 cut(s)	506
StyD4I	CCNGG	6 cut(s)	38, 39, 117, 255, 531, 558
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	3 cut(s)	215, 386, 654
TasI	AATT	4 cut(s)	7, 315, 350, 659
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	251, 263
TseI	GCWGC	6 cut(s)	64, 137, 140, 173, 179, 281
Tsp45I	GTSAC	2 cut(s)	251, 263
TspDTI	ATGAA	7 cut(s)	216, 351, 380, 386, 398, 452, 654
TspMI	CCCGGG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	44, 548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	245
XmaI	CCCGGG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.