Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016590

Physical Location & Seq

Genomic Coordinates Reverse (-)

24130272 .. 24131381

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1166800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAGCAGCAGGTGGTGATCATCATCATCAAGAGGATGTCATGATCTTGGGGTGCAAGGAACAACACAGCAACAACATTAATATTATGAAGGGTAAGCGCACAAAACGCTTGAGGCCCCAATCCCCAATCCCCTTTGCCATCCCAACAAACTCATCGTCCCCTGAGGGTGGCACCAGCCGTGGAGGGGGTGATGGCGGCGAAAACAACAACGATTGCATCAATAGTACCAACTTGTCCCCCACCACATCAGCTGAATTATTCCAAGACAGCACATCAGAAGAGGAGGACATGGCAAACTGCCTAATTCTTTTGGCGCAAGGCCAATCCCGGGCGGCTTCTTCCTCCCCCAATCACCACCACCAACCCCCCAACGATCATATTACTACAACTAGTCGAAAATTCTTGGAAGCAACAACTGTCACCGCAGGCAAGGCGGCAGGGGCGGCAGGGTATTACGTGTATGAATGCAAGACTTGTAACAGAACGTTCCCTTCTTTCCAAGCATTAGGGGGTCACAGGGCGAGTCACAAGAAGCTGAAGGCAAATATCGGAGACGATCACAAAAACAAACATCTTGGAATTGGGCTGTTGCCCCCGTCGGATGAAGATCAAGACACGCAATCGTTAAAGGACAACATTTTCCACAGAAACAACATCAACACATCTTCATCTCCACTTTCTCTCCATTTGAGCAATAGGGGTTTGGTTTTGAGCTCCAACAAGTCCTCTCCTAAAATCCACGAGTGCTCGATTTGCGGAGCGGAATTCACGTCCGGGCAGGCCTTGGGAGGCCACATGAGGCGCCACAGGGCGCCGATTGGAGCCACCAACACAACCTTGTCGTTGACGCCTCCGCCAGTCTCAGCCGCCTTTGAATCCCATCAGCAACAACATAAACATCAACAGCAGCAGCCACAGCTGCCCATGAAGAAGCAGAAAAGCATGTTGAATTTGGATTTGGATCTCAACCTTCCAGCACCTTCAGAGGATGATCACCACAAAGAAACCAAGTTTGTGTTTGCATCAAACCAGCAGCAGCAACAACAACAAGAACAGCAGCAGCAAGAAAGGTTAAGAACACAAATTTTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

370

Amino Acids

40.5

Weight (kDa)

7.1

Isoelectric Point (pI)

73.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	154 - 179	1.7e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	248 - 273	3.7e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10470 AT5G04390
fragaria_vesca	FvH4_7g18360
malus_domestica	MD01G1099800.v1.1 MD07G1166800.v1.1
prunus_persica	Prupe.2G205700_v2.0.a1
pyrus_communis	pycom07g16190
rosa_chinensis	RchiOBHm_Chr1g0362171
rosa_laevigata	RLG00000027670
rosa_rugosa	Rorug01G0294800
rosa_samantha	Rh1BG267500 Rh1CG285700 Rh1DG297500
rosa_wichuraiana	Rw1G027100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AccB1I	GGYRCC	3 cut(s)	173, 804, 814
AccBSI	CCGCTC	1 cut(s)	764
AciI	CCGC	9 cut(s)	198, 335, 426, 437, 446, 759, 764, 857, 870
AclI	AACGTT	1 cut(s)	488
AclWI	GGATC	1 cut(s)	972
AcsI	RAATTY	4 cut(s)	401, 767, 952, 1086
AcuI	CTGAAG	2 cut(s)	560, 969
AcyI	GRCGYC	3 cut(s)	805, 815, 851
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	3 cut(s)	170, 187, 331
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	878, 952
AhlI	ACTAGT	1 cut(s)	392
AjiI	CACGTC	1 cut(s)	774
AjuI	GAANNNNNNNTTGG	2 cut(s)	944, 976
AluBI	AGCT	4 cut(s)	254, 538, 717, 922
AluI	AGCT	4 cut(s)	254, 538, 717, 922
Alw21I	GWGCWC	2 cut(s)	719, 752
Alw26I	GTCTC	2 cut(s)	549, 868
AlwI	GGATC	1 cut(s)	972
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	4 cut(s)	116, 322, 783, 793
ApeKI	GCWGC	8 cut(s)	8, 910, 913, 922, 1036, 1039, 1060, 1063
ApoI	RAATTY	4 cut(s)	401, 767, 952, 1086
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AseI	ATTAAT	1 cut(s)	81
AspLEI	GCGC	4 cut(s)	102, 319, 807, 817
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	3 cut(s)	331, 332, 778
AsuHPI	GGTGA	5 cut(s)	29, 203, 347, 415, 989
AvaI	CYCGRG	1 cut(s)	330
AxyI	CCTNAGG	1 cut(s)	165
BanI	GGYRCC	3 cut(s)	173, 804, 814
BanII	GRGCYC	1 cut(s)	719
BauI	CACGAG	1 cut(s)	743
Bbv12I	GWGCWC	2 cut(s)	719, 752
BbvI	GCAGC	8 cut(s)	20, 909, 922, 925, 1048, 1051, 1072, 1075
BccI	CCATC	3 cut(s)	149, 188, 891
BceAI	ACGGC	1 cut(s)	165
BclI	TGATCA	2 cut(s)	19, 994
BcnI	CCSGG	3 cut(s)	331, 332, 778
BcoDI	GTCTC	2 cut(s)	549, 868
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BfoI	RGCGCY	2 cut(s)	808, 818
BfuAI	ACCTGC	1 cut(s)	2
Bme1390I	CCNGG	3 cut(s)	331, 332, 778
BmeT110I	CYCGRG	1 cut(s)	330
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	5 cut(s)	119, 175, 806, 816, 826
BmrFI	CCNGG	3 cut(s)	331, 332, 778
BmsI	GCATC	2 cut(s)	228, 1034
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	3 cut(s)	331, 332, 778
BsaAI	YACGTR	1 cut(s)	460
BsaBI	GATNNNNATC	3 cut(s)	24, 609, 963
BsaHI	GRCGYC	3 cut(s)	805, 815, 851
BsaJI	CCNNGG	3 cut(s)	181, 330, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 187, 331
Bse1I	ACTGG	1 cut(s)	860
Bse21I	CCTNAGG	1 cut(s)	165
Bse8I	GATNNNNATC	3 cut(s)	24, 609, 963
BseDI	CCNNGG	3 cut(s)	181, 330, 786
BseGI	GGATG	4 cut(s)	43, 141, 610, 997
BseJI	GATNNNNATC	3 cut(s)	24, 609, 963
BseLI	CCNNNNNNNGG	3 cut(s)	170, 187, 331
BseMII	CTCAG	2 cut(s)	156, 879
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	8 cut(s)	20, 909, 922, 925, 1048, 1051, 1072, 1075
BshFI	GGCC	4 cut(s)	118, 324, 785, 795
BshNI	GGYRCC	3 cut(s)	173, 804, 814
BsiHKAI	GWGCWC	2 cut(s)	719, 752
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	331, 777
BslFI	GGGAC	2 cut(s)	145, 223
BslI	CCNNNNNNNGG	3 cut(s)	170, 187, 331
BsmAI	GTCTC	2 cut(s)	549, 868
BsmBI	CGTCTC	1 cut(s)	549
BsmFI	GGGAC	2 cut(s)	145, 223
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	4 cut(s)	118, 324, 785, 795
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	719, 752
Bsp143I	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
BspACI	CCGC	9 cut(s)	198, 335, 426, 437, 446, 759, 764, 857, 870
BspANI	GGCC	4 cut(s)	118, 324, 785, 795
BspCNI	CTCAG	2 cut(s)	157, 878
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	5 cut(s)	119, 175, 806, 816, 826
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	972
BspT107I	GGYRCC	3 cut(s)	173, 804, 814
BsrBI	CCGCTC	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	860
BssECI	CCNNGG	3 cut(s)	181, 330, 786
BssMI	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
BssNI	GRCGYC	3 cut(s)	805, 815, 851
BssSI	CACGAG	1 cut(s)	743
BssT1I	CCWWGG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	743
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	3 cut(s)	805, 815, 851
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	430, 783
BstDEI	CTNAG	2 cut(s)	165, 865
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	4 cut(s)	43, 141, 610, 997
BstH2I	RGCGCY	2 cut(s)	808, 818
BstHHI	GCGC	4 cut(s)	102, 319, 807, 817
BstKTI	GATC	7 cut(s)	22, 48, 379, 562, 613, 967, 997
BstMAI	GTCTC	2 cut(s)	549, 868
BstMBI	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 434, 443, 446, 756, 919, 922
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	329, 330, 776
BstV1I	GCAGC	8 cut(s)	20, 909, 922, 925, 1048, 1051, 1072, 1075
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	118, 324, 785, 795
BtgI	CCRYGG	1 cut(s)	181
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	43, 141, 610, 997
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	430, 783
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	4 cut(s)	102, 319, 807, 817
Cfr13I	GGNCC	1 cut(s)	117
Cfr9I	CCCGGG	1 cut(s)	330
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	5 cut(s)	43, 292, 799, 928, 946
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	165, 865
DinI	GGCGCC	2 cut(s)	806, 816
DpnI	GATC	7 cut(s)	21, 47, 378, 561, 612, 966, 996
DpnII	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	846
Ecl136II	GAGCTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	786
Eco147I	AGGCCT	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	560, 969
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	767
EcoT14I	CCWWGG	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	719
EgeI	GGCGCC	2 cut(s)	806, 816
EheI	GGCGCC	2 cut(s)	806, 816
ErhI	CCWWGG	1 cut(s)	786
Esp3I	CGTCTC	1 cut(s)	549
FaeI	CATG	5 cut(s)	46, 295, 802, 931, 949
FaiI	YATR	9 cut(s)	44, 89, 293, 381, 465, 800, 897, 929, 947
FaqI	GGGAC	2 cut(s)	145, 223
FatI	CATG	5 cut(s)	42, 291, 798, 927, 945
FbaI	TGATCA	2 cut(s)	19, 994
FokI	GGATG	4 cut(s)	50, 128, 617, 1004
FriOI	GRGCYC	1 cut(s)	719
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	4 cut(s)	101, 318, 806, 816
HaeII	RGCGCY	2 cut(s)	808, 818
HaeIII	GGCC	4 cut(s)	118, 324, 785, 795
HapII	CCGG	2 cut(s)	331, 777
HgaI	GACGC	1 cut(s)	859
HhaI	GCGC	4 cut(s)	102, 319, 807, 817
Hin1I	GRCGYC	3 cut(s)	805, 815, 851
Hin1II	CATG	5 cut(s)	46, 295, 802, 931, 949
Hin6I	GCGC	4 cut(s)	100, 317, 805, 815
HinP1I	GCGC	4 cut(s)	100, 317, 805, 815
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HinfI	GANTC	2 cut(s)	526, 878
HpaII	CCGG	2 cut(s)	331, 777
HphI	GGTGA	5 cut(s)	29, 203, 347, 415, 989
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	4 cut(s)	280, 554, 604, 988
Hpy188III	TCNNGA	3 cut(s)	32, 43, 614
Hpy8I	GTNNAC	1 cut(s)	849
Hpy99I	CGWCG	1 cut(s)	604
HpyAV	CCTTC	5 cut(s)	85, 504, 535, 983, 993
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	3 cut(s)	459, 488, 773
HpyCH4V	TGCA	4 cut(s)	57, 219, 471, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 434, 443, 446, 756, 919, 922
HpyF3I	CTNAG	2 cut(s)	165, 865
HpySE526I	ACGT	3 cut(s)	459, 488, 773
Hsp92I	GRCGYC	3 cut(s)	805, 815, 851
Hsp92II	CATG	5 cut(s)	46, 295, 802, 931, 949
HspAI	GCGC	4 cut(s)	100, 317, 805, 815
KasI	GGCGCC	2 cut(s)	804, 814
Ksp22I	TGATCA	2 cut(s)	19, 994
Kzo9I	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
LmnI	GCTCC	3 cut(s)	722, 761, 824
Lsp1109I	GCAGC	8 cut(s)	20, 909, 922, 925, 1048, 1051, 1072, 1075
LweI	GCATC	2 cut(s)	228, 1034
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	3 cut(s)	459, 488, 773
MaeIII	GTNAC	4 cut(s)	421, 479, 515, 527
MalI	GATC	7 cut(s)	21, 47, 378, 561, 612, 966, 996
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
MboII	GAAGA	5 cut(s)	293, 333, 620, 660, 943
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	2 cut(s)	719, 752
MluCI	AATT	7 cut(s)	257, 306, 401, 582, 767, 952, 1086
Mly113I	GGCGCC	2 cut(s)	805, 815
MlyI	GAGTC	1 cut(s)	535
MmeI	TCCRAC	2 cut(s)	582, 744
MseI	TTAA	3 cut(s)	81, 629, 1076
MspA1I	CMGCKG	2 cut(s)	254, 922
MspI	CCGG	2 cut(s)	331, 777
MspR9I	CCNGG	3 cut(s)	331, 332, 778
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	7 cut(s)	108, 434, 443, 446, 756, 919, 922
NarI	GGCGCC	2 cut(s)	805, 815
NciI	CCSGG	3 cut(s)	331, 332, 778
NdeII	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
NlaIII	CATG	5 cut(s)	46, 295, 802, 931, 949
NlaIV	GGNNCC	5 cut(s)	119, 175, 806, 816, 826
NmuCI	GTSAC	3 cut(s)	421, 515, 527
NspI	RCATGY	1 cut(s)	949
PagI	TCATGA	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	2
PceI	AGGCCT	1 cut(s)	785
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	878
PleI	GAGTC	1 cut(s)	534
PluTI	GGCGCC	2 cut(s)	808, 818
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	719
Psp1406I	AACGTT	1 cut(s)	488
PspN4I	GGNNCC	5 cut(s)	119, 175, 806, 816, 826
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	964
PvuII	CAGCTG	2 cut(s)	254, 922
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	719
SaqAI	TTAA	3 cut(s)	81, 629, 1076
Sau3AI	GATC	7 cut(s)	19, 45, 376, 559, 610, 964, 994
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	3 cut(s)	331, 332, 778
SduI	GDGCHC	2 cut(s)	719, 752
SfaNI	GCATC	2 cut(s)	228, 1034
SfoI	GGCGCC	2 cut(s)	806, 816
SmaI	CCCGGG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	7 cut(s)	257, 306, 401, 582, 767, 952, 1086
SseBI	AGGCCT	1 cut(s)	785
SsiI	CCGC	9 cut(s)	198, 335, 426, 437, 446, 759, 764, 857, 870
SspDI	GGCGCC	2 cut(s)	804, 814
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	719
StuI	AGGCCT	1 cut(s)	785
StyD4I	CCNGG	3 cut(s)	329, 330, 776
StyI	CCWWGG	1 cut(s)	786
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	3 cut(s)	462, 491, 776
TaqI	TCGA	2 cut(s)	397, 752
TasI	AATT	7 cut(s)	257, 306, 401, 582, 767, 952, 1086
TauI	GCSGC	5 cut(s)	201, 338, 440, 449, 872
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	3 cut(s)	81, 629, 1076
Tru9I	TTAA	3 cut(s)	81, 629, 1076
TseFI	GTSAC	3 cut(s)	421, 515, 527
TseI	GCWGC	8 cut(s)	8, 910, 913, 922, 1036, 1039, 1060, 1063
Tsp45I	GTSAC	3 cut(s)	421, 515, 527
TspDTI	ATGAA	5 cut(s)	104, 480, 621, 660, 944
TspMI	CCCGGG	1 cut(s)	330
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	4 cut(s)	401, 767, 952, 1086
XceI	RCATGY	1 cut(s)	949
XmaI	CCCGGG	1 cut(s)	330
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.