AT3G10490
NAC Family

ANAC050 no apical meristem (NAM) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005817
Physical Location & Seq
Forward (+)
3267825 .. 3271202
3378 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10490.3

Sequence Viewer

Length: 717 bp
ATGGGTCGCGAATCTGTGGCTGTTGTGACTGCGCCGCCCTCGGCGACTGCTCCGGGTACTGCTTCGGTGGCGACCTCGCTTGCTCCTGGCTTCCGATTTCATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATATACAAGCATGAGCCCTGGGATTTAGCAGTGTTTTCGAGATTGAAGACAAGGGACCAAGAATGGTACTTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGCTAGGATGAACCGAGCAACTAACAGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAATCCGCCGTGACATTCTGCTTCTCGGTATGAAAAAGACACTTGTTTTCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTGCAAGATGCATATGTGTTGTGTAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGGAACAGATATGCTCCGTTCATGGAAGAGGAATGGGCTGATGATGAAGGAGCTCTGATTCCAGGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACGACCAGATGGACCAGATAATTTATGCGTCGTCTGGGGTTCACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

238

Amino Acids

26.95

Weight (kDa)

7.03

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 2 - 54 9.8e-15 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 554
AccII CGCG 1 cut(s) 9
AciI CCGC 4 cut(s) 35, 358, 647, 650
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 58, 162, 257, 326
AfiI CCNNNNNNNGG 1 cut(s) 554
AgsI TTSAA 2 cut(s) 136, 235
AjnI CCWGG 4 cut(s) 85, 206, 492, 616
AluBI AGCT 4 cut(s) 126, 335, 608, 634
AluI AGCT 4 cut(s) 126, 335, 608, 634
Alw21I GWGCWC 2 cut(s) 418, 610
Alw44I GTGCAC 1 cut(s) 414
AoxI GGCC 2 cut(s) 151, 545
ApaLI GTGCAC 1 cut(s) 414
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 151, 244, 545, 679
AsuC2I CCSGG 1 cut(s) 54
AvaII GGWCC 2 cut(s) 244, 679
BaeGI GKGCMC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 207, 610
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 242, 517
Bbv12I GWGCWC 2 cut(s) 418, 610
BccI CCATC 1 cut(s) 670
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 4 cut(s) 207, 241, 437, 471
BciT130I CCWGG 4 cut(s) 87, 208, 494, 618
BcnI CCSGG 1 cut(s) 54
BfaI CTAG 2 cut(s) 297, 641
BfmI CTRYAG 1 cut(s) 262
BisI GCNGC 3 cut(s) 35, 647, 650
BlsI GCNGC 3 cut(s) 36, 648, 651
Bme1390I CCNGG 5 cut(s) 54, 87, 208, 494, 618
Bme18I GGWCC 2 cut(s) 244, 679
BmgT120I GGNCC 4 cut(s) 151, 244, 545, 679
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 5 cut(s) 54, 87, 208, 494, 618
BmsI GCATC 2 cut(s) 160, 493
BpiI GAAGAC 2 cut(s) 242, 517
Bpu10I CCTNAGC 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 39, 206, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 3 cut(s) 332, 343, 653
BseBI CCWGG 4 cut(s) 87, 208, 494, 618
BseDI CCNNGG 3 cut(s) 39, 206, 207
BseGI GGATG 2 cut(s) 100, 306
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMII CTCAG 1 cut(s) 649
BseNI ACTGG 3 cut(s) 332, 343, 653
BseSI GKGCMC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 153, 547
BsiHKAI GWGCWC 2 cut(s) 418, 610
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 2 cut(s) 153, 547
Bsp1286I GDGCHC 3 cut(s) 207, 418, 610
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 4 cut(s) 35, 358, 647, 650
BspANI GGCC 2 cut(s) 153, 547
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 245
BsrI ACTGG 3 cut(s) 332, 343, 653
BssECI CCNNGG 3 cut(s) 39, 206, 207
BssSI CACGAG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 119
Bst2UI CCWGG 4 cut(s) 87, 208, 494, 618
Bst4CI ACNGT 3 cut(s) 266, 293, 407
Bst6I CTCTTC 2 cut(s) 131, 576
BstC8I GCNNGC 2 cut(s) 81, 414
BstDEI CTNAG 1 cut(s) 635
BstF5I GGATG 2 cut(s) 100, 306
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 68, 646
BstNI CCWGG 4 cut(s) 87, 208, 494, 618
BstSCI CCNGG 5 cut(s) 52, 85, 206, 492, 616
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 9
BstV2I GAAGAC 2 cut(s) 242, 517
BsuRI GGCC 2 cut(s) 153, 547
BtsCI GGATG 2 cut(s) 100, 306
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 225, 271, 412
BtuMI TCGCGA 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 81, 414
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 151, 244, 545, 679
CseI GACGC 1 cut(s) 684
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 4 cut(s) 57, 161, 256, 325
CviAII CATG 3 cut(s) 200, 449, 577
CviQI GTAC 4 cut(s) 57, 161, 256, 325
DdeI CTNAG 1 cut(s) 635
DraIII CACNNNGTG 1 cut(s) 554
Eam1104I CTCTTC 2 cut(s) 131, 576
EarI CTCTTC 2 cut(s) 131, 576
EciI GGCGGA 1 cut(s) 347
Ecl136II GAGCTC 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 207, 610
Eco47I GGWCC 2 cut(s) 244, 679
Eco53kI GAGCTC 1 cut(s) 608
EcoICRI GAGCTC 1 cut(s) 608
EcoRII CCWGG 4 cut(s) 85, 206, 492, 616
EcoT22I ATGCAT 2 cut(s) 450, 508
EcoT38I GRGCYC 2 cut(s) 207, 610
FaeI CATG 3 cut(s) 203, 452, 580
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 199, 448, 576
FauNDI CATATG 1 cut(s) 508
Fnu4HI GCNGC 3 cut(s) 35, 647, 650
FokI GGATG 2 cut(s) 87, 313
FriOI GRGCYC 2 cut(s) 207, 610
Fsp4HI GCNGC 3 cut(s) 35, 647, 650
FspBI CTAG 2 cut(s) 297, 641
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 35, 647, 650
HaeIII GGCC 2 cut(s) 153, 547
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 684
HhaI GCGC 1 cut(s) 34
Hin1II CATG 3 cut(s) 203, 452, 580
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 3 cut(s) 11, 522, 613
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 416, 709
Hpy188I TCNGA 4 cut(s) 95, 105, 432, 612
Hpy188III TCNNGA 3 cut(s) 8, 121, 228
Hpy8I GTNNAC 2 cut(s) 416, 709
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 2 cut(s) 136, 596
HpyCH4III ACNGT 3 cut(s) 266, 293, 407
HpyCH4IV ACGT 1 cut(s) 627
HpyCH4V TGCA 5 cut(s) 269, 416, 448, 499, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 646
HpyF3I CTNAG 1 cut(s) 635
HpySE526I ACGT 1 cut(s) 627
Hsp92II CATG 3 cut(s) 203, 452, 580
HspAI GCGC 1 cut(s) 32
LmnI GCTCC 4 cut(s) 55, 88, 574, 605
LweI GCATC 2 cut(s) 160, 493
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 297, 641
MaeII ACGT 1 cut(s) 627
MaeIII GTNAC 2 cut(s) 25, 362
MboII GAAGA 4 cut(s) 148, 247, 517, 593
MhlI GDGCHC 3 cut(s) 207, 418, 610
MluCI AATT 2 cut(s) 436, 687
MlyI GAGTC 1 cut(s) 531
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 7 cut(s) 49, 85, 106, 132, 175, 314, 577
Mph1103I ATGCAT 2 cut(s) 450, 508
MseI TTAA 1 cut(s) 630
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 5 cut(s) 54, 87, 208, 494, 618
MvaI CCWGG 4 cut(s) 87, 208, 494, 618
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 68, 646
NciI CCSGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 508
NlaIII CATG 3 cut(s) 203, 452, 580
NlaIV GGNNCC 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 25, 362
NruI TCGCGA 1 cut(s) 9
NsiI ATGCAT 2 cut(s) 450, 508
PasI CCCWGGG 1 cut(s) 207
PfeI GAWTC 2 cut(s) 11, 613
PflMI CCANNNNNTGG 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 3 cut(s) 36, 648, 651
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 610
Psp6I CCWGG 4 cut(s) 85, 206, 492, 616
PspGI CCWGG 4 cut(s) 85, 206, 492, 616
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 4 cut(s) 151, 244, 545, 679
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 4 cut(s) 58, 162, 257, 326
RsaNI GTAC 4 cut(s) 57, 161, 256, 325
SacI GAGCTC 1 cut(s) 610
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 3 cut(s) 35, 647, 650
Sau96I GGNCC 4 cut(s) 151, 244, 545, 679
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 5 cut(s) 54, 87, 208, 494, 618
SduI GDGCHC 3 cut(s) 207, 418, 610
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 160, 493
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 2 cut(s) 244, 679
Sse9I AATT 2 cut(s) 436, 687
SsiI CCGC 4 cut(s) 35, 358, 647, 650
SspMI CTAG 2 cut(s) 297, 641
SstI GAGCTC 1 cut(s) 610
StyD4I CCNGG 5 cut(s) 52, 85, 206, 492, 616
TaaI ACNGT 3 cut(s) 266, 293, 407
TaiI ACGT 1 cut(s) 630
TaqI TCGA 3 cut(s) 168, 186, 227
TasI AATT 2 cut(s) 436, 687
TauI GCSGC 3 cut(s) 37, 649, 652
TfiI GAWTC 2 cut(s) 11, 613
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 3 cut(s) 225, 271, 412
TseFI GTSAC 2 cut(s) 25, 362
Tsp45I GTSAC 2 cut(s) 25, 362
TspDTI ATGAA 6 cut(s) 89, 317, 398, 486, 565, 615
TspGWI ACGGA 2 cut(s) 501, 561
TspRI CASTG 3 cut(s) 225, 271, 412
Van91I CCANNNNNTGG 1 cut(s) 554
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 244, 679
XspI CTAG 2 cut(s) 297, 641
Zsp2I ATGCAT 2 cut(s) 450, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.