Rorug01G0117700

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005817
Physical Location & Seq
Reverse (-)
20665560 .. 20666129
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0117700.1

Sequence Viewer

Length: 570 bp
ATGAGTGCTCAGGTGTTGGACTTGCAGAATATGGTTGTGAAGAGGGAAGAGGGGAGGAGAGAGAGGGAGTGTAGGAGAGAGAAAGGTGAGGCTGAGAGAGAGGAAAGGATGAAAGAAGTTGAGTTTAGGAGAGAGAAGCGGAGGAATGAGCAGGAGGACTTGTTAGAAGATAGAGAATTGGAGTTGCAAGAGAGAGAGGTCATGTGGACAAGAAGGGAGTTTGAGAAACGGTTGAGGTTACAGGGGGAGTTTGATGAGGAGCGTCAGAGGACGATGAGGATGGAGGAGAGGAGGGAGGAGGAGGAGTTGGAGTGGCGGAAGAGTATGGTAGGTTTGCAAATTCAGCATGAGAAGCAAATGATGCAAATGCATGCTGAGGCATGCCAGAACCAAATGCAGATTCTTGGGGTCATGGCTAGGTTTGTTTGTCAATTTTTTGGGTCAATGAGTGATGGCCTTGGAGGTGGTTTAGGGACTCTGCCACCCCAAATTTTGCAGAATTTGCTGCATCCTGTCGGACTGGGTGAAAATGGGAAGCCGGATTCCAATTCGCCTTCTGAGTTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

189

Amino Acids

22.66

Weight (kDa)

5.22

Isoelectric Point (pI)

78.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 139, 316
AcsI RAATTY 3 cut(s) 339, 489, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
Alw21I GWGCWC 1 cut(s) 10
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 505
ApoI RAATTY 3 cut(s) 339, 489, 499
AsuHPI GGTGA 2 cut(s) 98, 536
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 492
BccI CCATC 2 cut(s) 274, 446
BfaI CTAG 2 cut(s) 417, 568
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 2 cut(s) 351, 517
BmuI ACTGGG 1 cut(s) 530
Bpu10I CCTNAGC 2 cut(s) 9, 375
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 6 cut(s) 146, 176, 290, 296, 320, 326
Bse1I ACTGG 1 cut(s) 525
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 114, 285, 508
BseMII CTCAG 4 cut(s) 23, 84, 366, 549
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 7 cut(s) 70, 272, 299, 304, 311, 314, 317
BseXI GCAGC 1 cut(s) 492
BshFI GGCC 1 cut(s) 456
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 487
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 10
BspACI CCGC 2 cut(s) 139, 316
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 4 cut(s) 22, 85, 367, 550
BsrI ACTGG 1 cut(s) 525
BssECI CCNNGG 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 35, 42, 314
BstAPI GCANNNNNTGC 2 cut(s) 361, 502
BstC8I GCNNGC 2 cut(s) 372, 382
BstDEI CTNAG 4 cut(s) 9, 93, 375, 558
BstF5I GGATG 3 cut(s) 114, 285, 508
BstMWI GCNNNNNNNGC 4 cut(s) 343, 352, 361, 502
BstNSI RCATGY 2 cut(s) 374, 384
BstV1I GCAGC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 456
BtsCI GGATG 3 cut(s) 114, 285, 508
Cac8I GCNNGC 2 cut(s) 372, 382
CseI GACGC 1 cut(s) 251
CviAII CATG 5 cut(s) 202, 347, 371, 381, 412
CviJI RGCY 4 cut(s) 92, 416, 456, 538
CviKI_1 RGCY 4 cut(s) 92, 416, 456, 538
DdeI CTNAG 4 cut(s) 9, 93, 375, 558
Eam1104I CTCTTC 3 cut(s) 35, 42, 314
EarI CTCTTC 3 cut(s) 35, 42, 314
EciI GGCGGA 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 457
EcoT22I ATGCAT 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 5 cut(s) 205, 350, 374, 384, 415
FaiI YATR 7 cut(s) 32, 203, 326, 348, 372, 382, 413
FaqI GGGAC 1 cut(s) 487
FatI CATG 5 cut(s) 201, 346, 370, 380, 411
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 3 cut(s) 121, 292, 495
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 2 cut(s) 417, 568
GluI GCNGC 1 cut(s) 506
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 251
Hin1II CATG 5 cut(s) 205, 350, 374, 384, 415
HinfI GANTC 3 cut(s) 400, 475, 542
HpaII CCGG 1 cut(s) 539
HphI GGTGA 2 cut(s) 98, 536
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 3 cut(s) 267, 518, 559
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 207, 564
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 8 cut(s) 25, 187, 337, 364, 370, 397, 496, 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 343, 352, 361, 502
HpyF3I CTNAG 4 cut(s) 9, 93, 375, 558
Hsp92II CATG 5 cut(s) 205, 350, 374, 384, 415
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 6 cut(s) 137, 227, 398, 506, 525, 552
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 2 cut(s) 351, 517
MaeI CTAG 2 cut(s) 417, 568
MaeIII GTNAC 1 cut(s) 237
MboII GAAGA 4 cut(s) 52, 59, 179, 331
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 6 cut(s) 176, 339, 431, 489, 499, 547
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 2 cut(s) 288, 496
Mph1103I ATGCAT 1 cut(s) 372
MspI CCGG 1 cut(s) 539
MwoI GCNNNNNNNGC 4 cut(s) 343, 352, 361, 502
NlaIII CATG 5 cut(s) 205, 350, 374, 384, 415
NsiI ATGCAT 1 cut(s) 372
NspI RCATGY 2 cut(s) 374, 384
PaeI GCATGC 2 cut(s) 374, 384
PfeI GAWTC 2 cut(s) 400, 542
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
SatI GCNGC 1 cut(s) 506
SchI GAGTC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 10
SetI ASST 7 cut(s) 15, 88, 201, 239, 334, 422, 466
SfaNI GCATC 2 cut(s) 351, 517
SphI GCATGC 2 cut(s) 374, 384
Sse9I AATT 6 cut(s) 176, 339, 431, 489, 499, 547
SsiI CCGC 2 cut(s) 139, 316
SspMI CTAG 2 cut(s) 417, 568
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 231
TasI AATT 6 cut(s) 176, 339, 431, 489, 499, 547
TfiI GAWTC 2 cut(s) 400, 542
TseI GCWGC 1 cut(s) 505
TspDTI ATGAA 1 cut(s) 125
XapI RAATTY 3 cut(s) 339, 489, 499
XceI RCATGY 2 cut(s) 374, 384
XspI CTAG 2 cut(s) 417, 568
Zsp2I ATGCAT 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.