MD02G1243900.v1.1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005817
Physical Location & Seq
Reverse (-)
29381808 .. 29387922
6115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1243900.v1.1.491

Sequence Viewer

Length: 2064 bp
ATGGGTCGCGAAGCTGACCTTCAGATAATACCATCAGCCGCCGCCGCCACCATCGCCGTAGCCGCCCCCATAGACCCGCCGACGCCGCCACCTGCGCCGACAGCCCTCGCTCCCGGCTTCAGGTTCCACCCAACAGACGAAGAACTCGTCATTTACTACCTCAAGCGCAAGGTCTGTCGCAAACCCTTCAAGTTTAACGCGATCTCCGAGGTCGACATCTACAAGAGCGAGCCCTGGGACCTCGCTGACAAGTCGAGCTTGAAGAGCAGAGACCAGGAATACTATTTTTTCAGTGCGTTGGATAGGAAGTATGGAAATGGGGCAAGGATGAATAGGGCTACCAACCAAGGGTACTGGAAGGCCACCGGAAATGACCGGGCCGTCAAGCACAACGATTTCGTGGTGGGGATGAAGAAAACCTTGGTGTTCCATAGCGGCCGAGCTCCAGATGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGACTTGTTGATGAAGTTTTTGAGAAGGCTGGGCTCGGTGCCATTCAGGATGCATTTGTGCTATGTCGAGTGTTTCACAAAAGCAATATAGGACCACCAAACGGGCATCGGTATGCGCCTTTTGTTGAGGAGGAGTGGGATGATGATGACAAGTTAACTTTGGTTCCTGGACAAGAGACCCGGAGTGTAGCTGTAGTTAGTCGTGATGCATTTGTGGTGGGAAATGATCATGCTGCATGTACTGAACAAAATGATTATGCTGCTCGTAGTGAGCAAAAGGTACATGCTGCTCGTAGTGAACAAAATGATTATGCTGCTAGTAGTGAGCAAAAGGTACATGCTGCTAGTAGTGAGCAAAAGGTACATGCTGCTCGTAGTGAACAAAATGGACATGCTGCATACATTAAAGGAAACGGACATGCTGCATACATCGGAGGAAATGGGCATGCTGGATACATCGGAGGAAATGGGCATGCTGGATACATCCGAGGAAACGGGCATGCTGCATATATTGGAGGCAAAGGCCAAGCTGCATATAATGGAGAAAATGGTCATGGAACTTCCATTGAACGAAATGGTCGTGGAATTTCCATGGAAGGAATTGACCATGGAACTTCCGTTGGTCATGGAACTTCTGTCAAAGGAACTGGTCACGGCACCGAAGGAAATGGTCACAGCACATCTGTCAAAAGATACGGTCACGTTACTTCTGTCGAAGGAAGTGGTCACATCACTTCTGTCGAAGGAAATGGTCAGGGCACTTCTGTCAAAGGAAATGGTCATGGCATTTCTGTTGAAGGAAATGTTGTTGAAGGAATTGGTCATGGCACTATAATTGTAGTAGACGACAATGGAACTACTAATGAAGGTAACTGTCATGAAACTGGTACTGCAGGAAATGGTCACAGTGCGCCCACTGCAGAAAATAATATTGTGCAGGATACTCAGGCAATCAGCAAGGCTATTGTTGTTGTTCCTGAACTTCCAGCAGAGAATCAAACTGTCTTACCACCGTGCAAGACAGAGAGAACGGATGATTATCCTATGACATGTGTGGTTAATAGAGAAGAGAGATTGGATGACTATCCGTCACCAGGTCCAGATGATGCACAACCCCTGCTAACTTTGTTTAATCGACAACCTGGGCAACTACGGCAGTATAAAAGAAGGCGGCATAATGAGTCAAATTCTAACCATTCAAATGCTTCTGAGATTTCAAGTGGGATGACACATGACCCTTGCTCGTCTACAACAACAACAGCGTCAACTGAGGCATCGATGACAACGACCACCAGAAATTTTCTGTCTGCACTGGTGGAGTATCAGCTGTTGGAATCCCTTGAACCCAAAGATACCACCCCAGCACCTCCTCCTGAACTTAATGCTGCATTGATGGAATCATCTGTGCCTACCAGCTGCTTGAAATACATAGAGACTTTGCAAACTGAGATCCACAAAATCTCAATCGAGAGGGAGACATTGAAGTTTGAAATGATGAGTGCCCAAGCCATGATCAACATTCTTCAAGCCCGAATTGATCTCCTAAACAAGGAGAACGAGGATTTGAAGAGGAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

688

Amino Acids

74.44

Weight (kDa)

6.01

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 38 - 163 5.4e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 2 cut(s) 521, 1139
AccI GTMKAC 3 cut(s) 213, 1326, 1730
AccII CGCG 2 cut(s) 9, 200
AciI CCGC 8 cut(s) 39, 42, 45, 63, 77, 86, 435, 1654
AclWI GGATC 1 cut(s) 1927
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 3 cut(s) 1068, 1669, 1780
AcuI CTGAAG 2 cut(s) 5, 103
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 7 cut(s) 353, 482, 724, 765, 819, 846, 1372
AfiI CCNNNNNNNGG 5 cut(s) 120, 348, 584, 1577, 2032
AflIII ACRYGT 1 cut(s) 1532
AhdI GACNNNNNGTC 1 cut(s) 1570
AjnI CCWGG 5 cut(s) 233, 273, 649, 1576, 1624
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 7 cut(s) 14, 258, 443, 674, 1013, 1810, 1899
AluI AGCT 7 cut(s) 14, 258, 443, 674, 1013, 1810, 1899
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 4 cut(s) 264, 653, 1910, 1952
AlwI GGATC 1 cut(s) 1927
AoxI GGCC 4 cut(s) 360, 378, 436, 1006
ApoI RAATTY 3 cut(s) 1068, 1669, 1780
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 4 cut(s) 97, 168, 601, 1396
AspS9I GGNCC 5 cut(s) 238, 378, 459, 575, 1580
AsuC2I CCSGG 3 cut(s) 114, 377, 664
AsuHPI GGTGA 1 cut(s) 1566
AvaII GGWCC 4 cut(s) 238, 459, 575, 1580
BaeGI GKGCMC 2 cut(s) 1244, 1987
BanI GGYRCC 2 cut(s) 521, 1139
BanII GRGCYC 3 cut(s) 234, 445, 519
Bbv12I GWGCWC 1 cut(s) 445
BccI CCATC 4 cut(s) 40, 59, 443, 1870
BceAI ACGGC 4 cut(s) 41, 365, 1153, 1652
BciT130I CCWGG 5 cut(s) 235, 275, 651, 1578, 1626
BciVI GTATCC 3 cut(s) 929, 956, 1417
BclI TGATCA 2 cut(s) 709, 1995
BcnI CCSGG 3 cut(s) 114, 377, 664
BcoDI GTCTC 4 cut(s) 264, 653, 1910, 1952
BfaI CTAG 2 cut(s) 801, 828
BfmI CTRYAG 3 cut(s) 675, 1374, 1401
BfuAI ACCTGC 1 cut(s) 100
BfuI GTATCC 3 cut(s) 929, 956, 1417
Bme1390I CCNGG 8 cut(s) 114, 235, 275, 377, 651, 664, 1578, 1626
Bme18I GGWCC 4 cut(s) 238, 459, 575, 1580
BmeRI GACNNNNNGTC 1 cut(s) 1570
BmgT120I GGNCC 5 cut(s) 238, 378, 459, 575, 1580
BmiI GGNNCC 5 cut(s) 125, 239, 523, 648, 1141
BmrFI CCNGG 8 cut(s) 114, 235, 275, 377, 651, 664, 1578, 1626
BmsI GCATC 5 cut(s) 523, 598, 679, 1579, 1766
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 3 cut(s) 114, 377, 664
Bsa29I ATCGAT 1 cut(s) 1760
BsaBI GATNNNNATC 2 cut(s) 1521, 1566
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 2 cut(s) 264, 653
BsaJI CCNNGG 9 cut(s) 207, 233, 234, 346, 420, 970, 1074, 1090, 1625
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 348, 584, 1577, 2032
Bse1I ACTGG 4 cut(s) 359, 1135, 1372, 1800
Bse8I GATNNNNATC 2 cut(s) 1521, 1566
BseBI CCWGG 5 cut(s) 235, 275, 651, 1578, 1626
BseCI ATCGAT 1 cut(s) 1760
BseDI CCNNGG 9 cut(s) 207, 233, 234, 346, 420, 970, 1074, 1090, 1625
BseGI GGATG 8 cut(s) 333, 414, 538, 628, 966, 1522, 1567, 1713
BseJI GATNNNNATC 2 cut(s) 1521, 1566
BseLI CCNNNNNNNGG 5 cut(s) 120, 348, 584, 1577, 2032
BseMII CTCAG 4 cut(s) 1442, 1683, 1743, 1920
BseNI ACTGG 4 cut(s) 359, 1135, 1372, 1800
BseRI GAGGAG 3 cut(s) 626, 629, 1842
BseSI GKGCMC 2 cut(s) 1244, 1987
BseX3I CGGCCG 1 cut(s) 436
BseYI CCCAGC 2 cut(s) 512, 1843
BsgI GTGCAG 2 cut(s) 1439, 1776
Bsh1236I CGCG 2 cut(s) 9, 200
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 4 cut(s) 362, 380, 438, 1008
BshNI GGYRCC 2 cut(s) 521, 1139
BshVI ATCGAT 1 cut(s) 1760
BsiEI CGRYCG 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 445
BsiSI CCGG 4 cut(s) 114, 366, 376, 664
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 5 cut(s) 120, 348, 584, 1577, 2032
BsmAI GTCTC 4 cut(s) 264, 653, 1910, 1952
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 4 cut(s) 362, 380, 438, 1008
Bso31I GGTCTC 2 cut(s) 264, 653
Bsp1286I GDGCHC 5 cut(s) 234, 445, 519, 1244, 1987
Bsp143I GATC 5 cut(s) 201, 709, 1932, 1995, 2020
Bsp19I CCATGG 2 cut(s) 1074, 1090
Bsp68I TCGCGA 1 cut(s) 9
BspACI CCGC 8 cut(s) 39, 42, 45, 63, 77, 86, 435, 1654
BspANI GGCC 4 cut(s) 362, 380, 438, 1008
BspCNI CTCAG 4 cut(s) 1441, 1684, 1744, 1921
BspDI ATCGAT 1 cut(s) 1760
BspFNI CGCG 2 cut(s) 9, 200
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 5 cut(s) 125, 239, 523, 648, 1141
BspMAI CTGCAG 2 cut(s) 1378, 1405
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 1927
BspQI GCTCTTC 1 cut(s) 257
BspT107I GGYRCC 2 cut(s) 521, 1139
BspTNI GGTCTC 2 cut(s) 264, 653
BsrI ACTGG 4 cut(s) 359, 1135, 1372, 1800
BssECI CCNNGG 9 cut(s) 207, 233, 234, 346, 420, 970, 1074, 1090, 1625
BssMI GATC 5 cut(s) 201, 709, 1932, 1995, 2020
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 346, 420, 1074, 1090
Bst2UI CCWGG 5 cut(s) 235, 275, 651, 1578, 1626
Bst4CI ACNGT 5 cut(s) 1181, 1358, 1391, 1486, 1497
Bst6I CTCTTC 4 cut(s) 257, 449, 1545, 2045
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 230, 930, 957, 984
BstDEI CTNAG 4 cut(s) 1428, 1692, 1752, 1929
BstDSI CCRYGG 2 cut(s) 1074, 1090
BstENI CCTNNNNNAGG 1 cut(s) 2030
BstF5I GGATG 8 cut(s) 333, 414, 538, 628, 966, 1522, 1567, 1713
BstFNI CGCG 2 cut(s) 9, 200
BstHHI GCGC 4 cut(s) 97, 168, 601, 1396
BstKTI GATC 5 cut(s) 204, 712, 1935, 1998, 2023
BstMAI GTCTC 4 cut(s) 264, 653, 1910, 1952
BstMBI GATC 5 cut(s) 201, 709, 1932, 1995, 2020
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 9 cut(s) 44, 53, 62, 85, 94, 101, 264, 1400, 1636
BstNI CCWGG 5 cut(s) 235, 275, 651, 1578, 1626
BstSCI CCNGG 8 cut(s) 112, 233, 273, 375, 649, 662, 1576, 1624
BstSFI CTRYAG 3 cut(s) 675, 1374, 1401
BstSLI GKGCMC 2 cut(s) 1244, 1987
BstUI CGCG 2 cut(s) 9, 200
BstX2I RGATCY 1 cut(s) 1932
BstYI RGATCY 1 cut(s) 1932
BstZI CGGCCG 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 1760
BsuI GTATCC 3 cut(s) 929, 956, 1417
BsuRI GGCC 4 cut(s) 362, 380, 438, 1008
BsuTUI ATCGAT 1 cut(s) 1760
BtgI CCRYGG 2 cut(s) 1074, 1090
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 8 cut(s) 333, 414, 538, 628, 966, 1522, 1567, 1713
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 4 cut(s) 298, 1396, 1398, 1793
BtuMI TCGCGA 1 cut(s) 9
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 4 cut(s) 230, 930, 957, 984
CciI TCATGA 1 cut(s) 1360
CfoI GCGC 4 cut(s) 97, 168, 601, 1396
Cfr13I GGNCC 5 cut(s) 238, 378, 459, 575, 1580
ClaI ATCGAT 1 cut(s) 1760
CseI GACGC 2 cut(s) 91, 1734
CsiI ACCWGGT 1 cut(s) 1576
Csp6I GTAC 7 cut(s) 352, 481, 723, 764, 818, 845, 1371
CviQI GTAC 7 cut(s) 352, 481, 723, 764, 818, 845, 1371
DdeI CTNAG 4 cut(s) 1428, 1692, 1752, 1929
DpnI GATC 5 cut(s) 203, 711, 1934, 1997, 2022
DpnII GATC 5 cut(s) 201, 709, 1932, 1995, 2020
DrdI GACNNNNNNGTC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 1570
DseDI GACNNNNNNGTC 1 cut(s) 380
EaeI YGGCCR 1 cut(s) 436
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 4 cut(s) 257, 449, 1545, 2045
Eam1105I GACNNNNNGTC 1 cut(s) 1570
EarI CTCTTC 4 cut(s) 257, 449, 1545, 2045
Ecl136II GAGCTC 1 cut(s) 443
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 4 cut(s) 346, 420, 1074, 1090
Eco24I GRGCYC 3 cut(s) 234, 445, 519
Eco31I GGTCTC 2 cut(s) 264, 653
Eco47I GGWCC 4 cut(s) 238, 459, 575, 1580
Eco52I CGGCCG 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 2 cut(s) 5, 103
EcoICRI GAGCTC 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 2030
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 5 cut(s) 233, 273, 649, 1576, 1624
EcoT14I CCWWGG 4 cut(s) 346, 420, 1074, 1090
EcoT22I ATGCAT 3 cut(s) 477, 538, 694
EcoT38I GRGCYC 3 cut(s) 234, 445, 519
ErhI CCWWGG 4 cut(s) 346, 420, 1074, 1090
FalI AAGNNNNNCTT 5 cut(s) 35, 242, 274, 404, 436
FaqI GGGAC 1 cut(s) 251
FauI CCCGC 1 cut(s) 84
FbaI TGATCA 2 cut(s) 709, 1995
FblI GTMKAC 3 cut(s) 213, 1326, 1730
FokI GGATG 8 cut(s) 340, 421, 545, 635, 953, 1529, 1574, 1720
FriOI GRGCYC 3 cut(s) 234, 445, 519
FspBI CTAG 2 cut(s) 801, 828
GlaI GCGC 4 cut(s) 96, 167, 600, 1395
GsaI CCCAGC 2 cut(s) 516, 1847
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 4 cut(s) 362, 380, 438, 1008
HapII CCGG 4 cut(s) 114, 366, 376, 664
HgaI GACGC 2 cut(s) 91, 1734
HhaI GCGC 4 cut(s) 97, 168, 601, 1396
Hin1I GRCGYC 1 cut(s) 83
Hin6I GCGC 4 cut(s) 95, 166, 599, 1394
HinP1I GCGC 4 cut(s) 95, 166, 599, 1394
HincII GTYRAC 3 cut(s) 214, 639, 1749
HindII GTYRAC 3 cut(s) 214, 639, 1749
HinfI GANTC 4 cut(s) 1477, 1664, 1817, 1880
HpaI GTTAAC 1 cut(s) 639
HpaII CCGG 4 cut(s) 114, 366, 376, 664
HphI GGTGA 1 cut(s) 1566
Hpy166II GTNNAC 7 cut(s) 214, 639, 782, 863, 1327, 1731, 1749
Hpy188I TCNGA 7 cut(s) 24, 208, 917, 944, 971, 1693, 2063
Hpy188III TCNNGA 9 cut(s) 8, 446, 530, 686, 1361, 1460, 1583, 1856, 1951
Hpy8I GTNNAC 7 cut(s) 214, 639, 782, 863, 1327, 1731, 1749
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 5 cut(s) 1181, 1358, 1391, 1486, 1497
HpyCH4IV ACGT 1 cut(s) 1185
HpyF10VI GCNNNNNNNGC 9 cut(s) 44, 53, 62, 85, 94, 101, 264, 1400, 1636
HpyF3I CTNAG 4 cut(s) 1428, 1692, 1752, 1929
HpySE526I ACGT 1 cut(s) 1185
Hsp92I GRCGYC 1 cut(s) 83
HspAI GCGC 4 cut(s) 95, 166, 599, 1394
Ksp22I TGATCA 2 cut(s) 709, 1995
KspAI GTTAAC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 201, 709, 1932, 1995, 2020
LguI GCTCTTC 1 cut(s) 257
LmnI GCTCC 2 cut(s) 115, 448
LweI GCATC 5 cut(s) 523, 598, 679, 1579, 1766
MabI ACCWGGT 1 cut(s) 1576
MaeI CTAG 2 cut(s) 801, 828
MaeII ACGT 1 cut(s) 1185
MaeIII GTNAC 8 cut(s) 1133, 1154, 1181, 1186, 1208, 1352, 1385, 1572
MalI GATC 5 cut(s) 203, 711, 1934, 1997, 2022
MboI GATC 5 cut(s) 201, 709, 1932, 1995, 2020
MboII GAAGA 7 cut(s) 152, 274, 424, 466, 1562, 1997, 2062
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 1 cut(s) 1932
MhlI GDGCHC 5 cut(s) 234, 445, 519, 1244, 1987
MluCI AATT 8 cut(s) 463, 1068, 1083, 1299, 1317, 1669, 1780, 2016
MlyI GAGTC 1 cut(s) 1673
MmeI TCCRAC 2 cut(s) 279, 1794
Mph1103I ATGCAT 3 cut(s) 477, 538, 694
MseI TTAA 6 cut(s) 195, 638, 888, 1542, 1614, 1863
MslI CAYNNNNRTG 2 cut(s) 594, 1683
MspA1I CMGCKG 2 cut(s) 1810, 1899
MspI CCGG 4 cut(s) 114, 366, 376, 664
MspR9I CCNGG 8 cut(s) 114, 235, 275, 377, 651, 664, 1578, 1626
MunI CAATTG 1 cut(s) 463
MvaI CCWGG 5 cut(s) 235, 275, 651, 1578, 1626
MvnI CGCG 2 cut(s) 9, 200
MwoI GCNNNNNNNGC 9 cut(s) 44, 53, 62, 85, 94, 101, 264, 1400, 1636
NciI CCSGG 3 cut(s) 114, 377, 664
NcoI CCATGG 2 cut(s) 1074, 1090
NdeII GATC 5 cut(s) 201, 709, 1932, 1995, 2020
NlaIV GGNNCC 5 cut(s) 125, 239, 523, 648, 1141
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 6 cut(s) 1133, 1154, 1181, 1208, 1385, 1572
NruI TCGCGA 1 cut(s) 9
NsiI ATGCAT 3 cut(s) 477, 538, 694
PaeI GCATGC 3 cut(s) 932, 959, 986
PagI TCATGA 1 cut(s) 1360
PaqCI CACCTGC 1 cut(s) 100
PasI CCCWGGG 1 cut(s) 234
PciI ACATGT 1 cut(s) 1532
PciSI GCTCTTC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 204, 1060, 1766
PfeI GAWTC 3 cut(s) 1477, 1817, 1880
PfoI TCCNGGA 1 cut(s) 649
PleI GAGTC 1 cut(s) 1672
PpsI GAGTC 1 cut(s) 1672
PpuMI RGGWCCY 1 cut(s) 238
PscI ACATGT 1 cut(s) 1532
Psp124BI GAGCTC 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 5 cut(s) 233, 273, 649, 1576, 1624
PspFI CCCAGC 2 cut(s) 512, 1843
PspGI CCWGG 5 cut(s) 233, 273, 649, 1576, 1624
PspN4I GGNNCC 5 cut(s) 125, 239, 523, 648, 1141
PspPI GGNCC 5 cut(s) 238, 378, 459, 575, 1580
PspPPI RGGWCCY 1 cut(s) 238
PstI CTGCAG 2 cut(s) 1378, 1405
PsuI RGATCY 1 cut(s) 1932
PvuII CAGCTG 2 cut(s) 1810, 1899
RruI TCGCGA 1 cut(s) 9
RsaI GTAC 7 cut(s) 353, 482, 724, 765, 819, 846, 1372
RsaNI GTAC 7 cut(s) 352, 481, 723, 764, 818, 845, 1371
RseI CAYNNNNRTG 2 cut(s) 594, 1683
SacI GAGCTC 1 cut(s) 445
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 257
SaqAI TTAA 6 cut(s) 195, 638, 888, 1542, 1614, 1863
Sau3AI GATC 5 cut(s) 201, 709, 1932, 1995, 2020
Sau96I GGNCC 5 cut(s) 238, 378, 459, 575, 1580
SchI GAGTC 1 cut(s) 1673
ScrFI CCNGG 8 cut(s) 114, 235, 275, 377, 651, 664, 1578, 1626
SduI GDGCHC 5 cut(s) 234, 445, 519, 1244, 1987
SexAI ACCWGGT 1 cut(s) 1576
SfaNI GCATC 5 cut(s) 523, 598, 679, 1579, 1766
SfcI CTRYAG 3 cut(s) 675, 1374, 1401
SinI GGWCC 4 cut(s) 238, 459, 575, 1580
SmiMI CAYNNNNRTG 2 cut(s) 594, 1683
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SphI GCATGC 3 cut(s) 932, 959, 986
Sse9I AATT 8 cut(s) 463, 1068, 1083, 1299, 1317, 1669, 1780, 2016
SsiI CCGC 8 cut(s) 39, 42, 45, 63, 77, 86, 435, 1654
SspI AATATT 1 cut(s) 1414
SspMI CTAG 2 cut(s) 801, 828
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 8 cut(s) 112, 233, 273, 375, 649, 662, 1576, 1624
StyI CCWWGG 4 cut(s) 346, 420, 1074, 1090
TaaI ACNGT 5 cut(s) 1181, 1358, 1391, 1486, 1497
TaiI ACGT 1 cut(s) 1188
TaqI TCGA 8 cut(s) 213, 254, 550, 1197, 1224, 1618, 1760, 1950
TasI AATT 8 cut(s) 463, 1068, 1083, 1299, 1317, 1669, 1780, 2016
TatI WGTACW 2 cut(s) 480, 722
TauI GCSGC 7 cut(s) 41, 44, 47, 65, 88, 438, 1657
TfiI GAWTC 3 cut(s) 1477, 1817, 1880
Tru1I TTAA 6 cut(s) 195, 638, 888, 1542, 1614, 1863
Tru9I TTAA 6 cut(s) 195, 638, 888, 1542, 1614, 1863
TscAI CASTG 4 cut(s) 298, 1396, 1405, 1800
TseFI GTSAC 6 cut(s) 1133, 1154, 1181, 1208, 1385, 1572
Tsp45I GTSAC 6 cut(s) 1133, 1154, 1181, 1208, 1385, 1572
TspDTI ATGAA 5 cut(s) 344, 425, 510, 1362, 1377
TspGWI ACGGA 4 cut(s) 912, 1090, 1529, 1560
TspRI CASTG 4 cut(s) 298, 1396, 1405, 1800
VpaK11BI GGWCC 4 cut(s) 238, 459, 575, 1580
XagI CCTNNNNNAGG 1 cut(s) 2030
XapI RAATTY 3 cut(s) 1068, 1669, 1780
XmiI GTMKAC 3 cut(s) 213, 1326, 1730
XspI CTAG 2 cut(s) 801, 828
Zsp2I ATGCAT 3 cut(s) 477, 538, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.