Rmu_co8372589.1_g000001

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8372589.1
OG0005817
Physical Location & Seq
Forward (+)
1 .. 840
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8372589.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
gatactcagaaaatcagcaatgctcttcttagtgctactgaacttccaaaagacagtcaaactgttttagtgccatgcaagagagagaaattggatgatgatccaatgacatgtgtagttaatcgagaagagagattggatgattacccatcaccgcttggagatgatccacaacccctgctatcactgtttaatcagcagcctggtatactacgccaatataaaaggaggaggcataatgaatcaaattcaaaccgttcaaatgcctcagagatttcaagtgggttgactcatgatccttgctcatctacaacaacgacagcgtcaacagagacttcggtgacggcaacaacaaaaagaaattttctgtctgcattggtggaatttcaattgttagaatcccttgaacccaaagataagactccggtagctccacctgaatttaatgctgctctgcataattcatctgtgccttctagctgcttgaaattcatagagagtttgcaaaatgagattcacaagatttcgattgagaaggagacattgaaatttgaaatgctgagtgcccaagctgtgattaacattcttcaatctagaattgatcttctgaacaaggagaatgaggatctgaagaggaatgcccgagaggctgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

5.26

Isoelectric Point (pI)

70.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 208
AciI CCGC 1 cut(s) 155
AclWI GGATC 4 cut(s) 95, 161, 290, 633
AcsI RAATTY 6 cut(s) 247, 361, 383, 440, 488, 548
AcuI CTGAAG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 9 cut(s) 252, 261, 279, 389, 407, 487, 547, 554, 590
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 431, 480, 572
AluI AGCT 3 cut(s) 431, 480, 572
Alw26I GTCTC 2 cut(s) 326, 533
AlwI GGATC 4 cut(s) 95, 161, 290, 633
Ama87I CYCGRG 1 cut(s) 642
ApeKI GCWGC 3 cut(s) 199, 449, 480
ApoI RAATTY 6 cut(s) 247, 361, 383, 440, 488, 548
AsuHPI GGTGA 2 cut(s) 144, 352
AvaI CYCGRG 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 568
BbvI GCAGC 3 cut(s) 211, 436, 467
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 326, 533
BfaI CTAG 2 cut(s) 477, 594
BglI GCCNNNNNGGC 1 cut(s) 647
BisI GCNGC 3 cut(s) 200, 450, 481
BlsI GCNGC 3 cut(s) 201, 451, 482
Bme1390I CCNGG 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 204
BsaBI GATNNNNATC 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 424
Bse3DI GCAATG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 100, 145
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 4 cut(s) 20, 282, 551, 642
BseRI GAGGAG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 3 cut(s) 211, 436, 467
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 326, 533
BsmI GAATGC 1 cut(s) 643
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 5 cut(s) 100, 166, 295, 601, 625
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 4 cut(s) 19, 281, 552, 643
BspHI TCATGA 1 cut(s) 292
BspPI GGATC 4 cut(s) 95, 161, 290, 633
BspQI GCTCTTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 25
BssMI GATC 5 cut(s) 100, 166, 295, 601, 625
BssNAI GTATAC 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 4 cut(s) 56, 64, 189, 257
Bst6I CTCTTC 3 cut(s) 30, 123, 626
BstDEI CTNAG 5 cut(s) 6, 29, 268, 560, 651
BstF5I GGATG 2 cut(s) 100, 145
BstKTI GATC 5 cut(s) 103, 169, 298, 604, 628
BstMAI GTCTC 2 cut(s) 326, 533
BstMBI GATC 5 cut(s) 100, 166, 295, 601, 625
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 211, 436, 467
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BstZ17I GTATAC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 100, 145
BtsIMutI CAGTG 1 cut(s) 185
CciI TCATGA 1 cut(s) 292
CseI GACGC 1 cut(s) 312
CviAII CATG 3 cut(s) 75, 111, 293
CviJI RGCY 5 cut(s) 202, 431, 480, 572, 650
CviKI_1 RGCY 5 cut(s) 202, 431, 480, 572, 650
DdeI CTNAG 5 cut(s) 6, 29, 268, 560, 651
DpnI GATC 5 cut(s) 102, 168, 297, 603, 627
DpnII GATC 5 cut(s) 100, 166, 295, 601, 625
Eam1104I CTCTTC 3 cut(s) 30, 123, 626
EarI CTCTTC 3 cut(s) 30, 123, 626
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 78, 114, 296
FaiI YATR 8 cut(s) 76, 112, 209, 222, 237, 294, 459, 494
FatI CATG 3 cut(s) 74, 110, 292
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 200, 450, 481
FokI GGATG 2 cut(s) 107, 152
Fsp4HI GCNGC 3 cut(s) 200, 450, 481
FspBI CTAG 2 cut(s) 477, 594
GluI GCNGC 3 cut(s) 200, 450, 481
HapII CCGG 1 cut(s) 425
HgaI GACGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 78, 114, 296
HincII GTYRAC 2 cut(s) 288, 327
HindII GTYRAC 2 cut(s) 288, 327
HinfI GANTC 5 cut(s) 242, 289, 398, 421, 514
HpaII CCGG 1 cut(s) 425
HphI GGTGA 2 cut(s) 144, 352
Hpy166II GTNNAC 3 cut(s) 209, 288, 327
Hpy188I TCNGA 4 cut(s) 9, 271, 609, 630
Hpy188III TCNNGA 3 cut(s) 125, 293, 594
Hpy8I GTNNAC 3 cut(s) 209, 288, 327
HpyAV CCTTC 2 cut(s) 483, 529
HpyCH4III ACNGT 4 cut(s) 56, 64, 189, 257
HpyCH4V TGCA 4 cut(s) 78, 374, 457, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 5 cut(s) 6, 29, 268, 560, 651
Hsp92II CATG 3 cut(s) 78, 114, 296
Kzo9I GATC 5 cut(s) 100, 166, 295, 601, 625
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 189, 191, 216, 438, 450
Lsp1109I GCAGC 3 cut(s) 211, 436, 467
MaeI CTAG 2 cut(s) 477, 594
MaeIII GTNAC 1 cut(s) 340
MalI GATC 5 cut(s) 102, 168, 297, 603, 627
MboI GATC 5 cut(s) 100, 166, 295, 601, 625
MboII GAAGA 5 cut(s) 17, 140, 578, 596, 643
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 568
MlyI GAGTC 2 cut(s) 283, 415
MnlI CCTC 6 cut(s) 222, 225, 277, 616, 627, 640
MseI TTAA 4 cut(s) 120, 192, 444, 579
MspI CCGG 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 204
MunI CAATTG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 5 cut(s) 100, 166, 295, 601, 625
NlaIII CATG 3 cut(s) 78, 114, 296
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 114
PagI TCATGA 1 cut(s) 292
PciI ACATGT 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 3 cut(s) 242, 398, 514
PflFI GACNNNGTC 1 cut(s) 322
PkrI GCNGC 3 cut(s) 201, 451, 482
PleI GAGTC 2 cut(s) 283, 415
PpsI GAGTC 2 cut(s) 283, 415
PscI ACATGT 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 625
PsyI GACNNNGTC 1 cut(s) 322
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 4 cut(s) 120, 192, 444, 579
SatI GCNGC 3 cut(s) 200, 450, 481
Sau3AI GATC 5 cut(s) 100, 166, 295, 601, 625
SchI GAGTC 2 cut(s) 283, 415
ScrFI CCNGG 1 cut(s) 204
SduI GDGCHC 1 cut(s) 568
SetI ASST 4 cut(s) 433, 439, 482, 574
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 477, 594
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 4 cut(s) 56, 64, 189, 257
TaqI TCGA 2 cut(s) 124, 527
TfiI GAWTC 3 cut(s) 242, 398, 514
Tru1I TTAA 4 cut(s) 120, 192, 444, 579
Tru9I TTAA 4 cut(s) 120, 192, 444, 579
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 199, 449, 480
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 255, 453, 481
TspRI CASTG 1 cut(s) 192
Tth111I GACNNNGTC 1 cut(s) 322
XapI RAATTY 6 cut(s) 247, 361, 383, 440, 488, 548
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 2 cut(s) 477, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.