Rorug01G0117500

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005817
Physical Location & Seq
Forward (+)
20648124 .. 20649865
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0117500.1

Sequence Viewer

Length: 1305 bp
ATGTATGATTATTCATCAGCTCCATACAGCTCGTATAAACCTCAAAATCTTTATGTGGAATGGTCGGAACCAAGTTGTGGACTATGCGAAGCACAGGGCGTCAAATGTGGACTGAAGAAAAGTGGCACCGAAAGTACCGAAACTGAATGCGTTTATAGGGAAGGAGGTTCACAAAAAAAGTTAGTAGCAACAGGTGCATCCCTGGGTTCATTTGTACTCATACTACTTGTCGCTGCAGTTTATCGTGTCTACAGTTTTGACAGGAAAGAAAAAGAGAATCAATTAAAACTTGAAGTATTTTTAGAGGATTACAGAGCACTCAAACCAAGCAGATATTCTTATGCAGATATTAAGAGGATTACAAATCAATTCAAGGACAAATTAGGCCAAGGAGCCTATGGGACTGTTTTTAAGGGAAAACTTTCTGCTGAATGTTTTGTTGCGGTGAAAGTCCTCAATAGTACCAAGGGAAATGGGGAAGAGTTTGTAAATGAAGTAGGAACAATGGGACATATCCACCATGTCAATGTGGTTCGATTGGTTGGATTCTGCGCGGATGGATTTAGACGAGCTCTTGTTTATGACTTCTTACCTAATGGTTCACTACAAGATTTCATTTCATCAGCAGACAATAACAATTCTTTCCTTGGTTGGAGTAAGTTGCAAGATATTTCTCTTGGTATAGCAAAAGGAATTGAATATCTGCACCAAGGATGCAATCAACGGATCCTGCATTTTGATATCAAACCCCATAATGTTTTGCTAGACCATAACTTCAACGCAAAGATTTCTGATTTTGGTTTGGCCAAGTTATGTTCCAAGGATCAAAGTATAGTGTCAATGACTACCGCCAGGGGAACTATAGGGTACATTGCACCTGAAGTGTTCTCCCGGAACTTCGGAAATGTGTCCTATAAGTCAGATGTCTATAGCTATGGAATGGTACTGCTTGAGATTGTAGGAGGGAGAAAGAACATTGGTTCAACCATAGAGAACACCAATGAAGTTTACTACCCAGAATGGATCTATAATCTTCTAGAAGAAAAAGACGACCTACCTATCAATGTAGGGGAAGAAGGAGATGTTAAAATTGCAAAGAGACTTGCGATTATAGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCTATGCAAGGGGTGATTCAGATGTTGGAAGAAGGAGAAAACTTAACCATGCCTCCAAATCCTTTTGCCTCTCAGGGTCCAGCGGGAACAAATACAAGTACACCTTCAAGAAATTTAAATCTCCAACTAGAAGTAATTCCTGAGTTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

434

Amino Acids

48.31

Weight (kDa)

5.86

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 123 - 392 3e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 124 - 391 5.9e-46 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 125, 1134
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 1 cut(s) 249
AccII CGCG 1 cut(s) 554
AciI CCGC 4 cut(s) 443, 554, 849, 1235
AclWI GGATC 4 cut(s) 721, 734, 831, 1031
AcoI YGGCCR 1 cut(s) 804
AcsI RAATTY 1 cut(s) 1264
AcuI CTGAAG 2 cut(s) 134, 900
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 6 cut(s) 136, 216, 463, 869, 945, 1252
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 7 cut(s) 293, 373, 698, 778, 984, 1130, 1260
AjnI CCWGG 2 cut(s) 201, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 4 cut(s) 20, 30, 572, 933
AluI AGCT 4 cut(s) 20, 30, 572, 933
Alw21I GWGCWC 2 cut(s) 319, 574
Alw26I GTCTC 2 cut(s) 1093, 1121
AlwI GGATC 4 cut(s) 721, 734, 831, 1031
AoxI GGCC 2 cut(s) 385, 804
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 1264
Asp700I GAANNNNTTC 2 cut(s) 421, 1287
AspLEI GCGC 1 cut(s) 554
AspS9I GGNCC 1 cut(s) 1229
AsuC2I CCSGG 1 cut(s) 892
AsuHPI GGTGA 2 cut(s) 457, 1177
AvaII GGWCC 1 cut(s) 1229
BalI TGGCCA 1 cut(s) 806
BamHI GGATCC 1 cut(s) 726
BanI GGYRCC 2 cut(s) 125, 1134
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 319, 574
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 203, 853
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 2 cut(s) 1093, 1121
BfaI CTAG 3 cut(s) 764, 1037, 1280
BfmI CTRYAG 5 cut(s) 234, 250, 861, 928, 1140
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 3 cut(s) 203, 853, 892
Bme18I GGWCC 1 cut(s) 1229
BmgT120I GGNCC 1 cut(s) 1229
BmiI GGNNCC 6 cut(s) 69, 127, 394, 728, 1136, 1230
BmrFI CCNGG 3 cut(s) 203, 853, 892
BmsI GCATC 2 cut(s) 206, 704
BpuEI CTTGAG 1 cut(s) 971
BpuMI CCSGG 1 cut(s) 892
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 1121
BsaJI CCNNGG 8 cut(s) 201, 202, 388, 465, 646, 709, 819, 852
BsaXI ACNNNNNCTCC 2 cut(s) 1189, 1219
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 870
BseBI CCWGG 2 cut(s) 203, 853
BseDI CCNNGG 8 cut(s) 201, 202, 388, 465, 646, 709, 819, 852
BseGI GGATG 3 cut(s) 197, 562, 719
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 2 cut(s) 1238, 1284
BseXI GCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 2 cut(s) 387, 806
BshNI GGYRCC 2 cut(s) 125, 1134
BsiHKAI GWGCWC 2 cut(s) 319, 574
BsiSI CCGG 1 cut(s) 892
BslFI GGGAC 2 cut(s) 415, 522
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 2 cut(s) 1093, 1121
BsmFI GGGAC 2 cut(s) 415, 522
BsmI GAATGC 2 cut(s) 152, 1125
BsnI GGCC 2 cut(s) 387, 806
Bso31I GGTCTC 1 cut(s) 1121
Bsp1286I GDGCHC 2 cut(s) 319, 574
Bsp143I GATC 4 cut(s) 726, 823, 1023, 1144
BspACI CCGC 4 cut(s) 443, 554, 849, 1235
BspANI GGCC 2 cut(s) 387, 806
BspCNI CTCAG 2 cut(s) 1237, 1285
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 6 cut(s) 69, 127, 394, 728, 1136, 1230
BspMAI CTGCAG 2 cut(s) 238, 1144
BspPI GGATC 4 cut(s) 721, 734, 831, 1031
BspT107I GGYRCC 2 cut(s) 125, 1134
BspTNI GGTCTC 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 870
BssECI CCNNGG 8 cut(s) 201, 202, 388, 465, 646, 709, 819, 852
BssMI GATC 4 cut(s) 726, 823, 1023, 1144
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 5 cut(s) 388, 465, 646, 709, 819
Bst2UI CCWGG 2 cut(s) 203, 853
Bst4CI ACNGT 2 cut(s) 254, 406
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 1224, 1293
BstF5I GGATG 3 cut(s) 197, 562, 719
BstFNI CGCG 1 cut(s) 554
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 4 cut(s) 729, 826, 1026, 1147
BstMAI GTCTC 2 cut(s) 1093, 1121
BstMBI GATC 4 cut(s) 726, 823, 1023, 1144
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 2 cut(s) 203, 853
BstSCI CCNGG 3 cut(s) 201, 851, 890
BstSFI CTRYAG 5 cut(s) 234, 250, 861, 928, 1140
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 726, 1023
BstYI RGATCY 2 cut(s) 726, 1023
BsuRI GGCC 2 cut(s) 387, 806
BtsCI GGATG 3 cut(s) 197, 562, 719
CfoI GCGC 1 cut(s) 554
Cfr13I GGNCC 1 cut(s) 1229
CseI GACGC 1 cut(s) 88
Csp6I GTAC 6 cut(s) 135, 215, 462, 868, 944, 1251
CviAII CATG 2 cut(s) 521, 1201
CviJI RGCY 7 cut(s) 20, 30, 387, 395, 572, 806, 933
CviKI_1 RGCY 7 cut(s) 20, 30, 387, 395, 572, 806, 933
CviQI GTAC 6 cut(s) 135, 215, 462, 868, 944, 1251
DdeI CTNAG 2 cut(s) 1224, 1293
DpnI GATC 4 cut(s) 728, 825, 1025, 1146
DpnII GATC 4 cut(s) 726, 823, 1023, 1144
DraI TTTAAA 1 cut(s) 1269
EaeI YGGCCR 1 cut(s) 804
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 572
Eco130I CCWWGG 5 cut(s) 388, 465, 646, 709, 819
Eco24I GRGCYC 1 cut(s) 574
Eco31I GGTCTC 1 cut(s) 1121
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 1 cut(s) 1229
Eco53kI GAGCTC 1 cut(s) 572
Eco57I CTGAAG 2 cut(s) 134, 900
EcoICRI GAGCTC 1 cut(s) 572
EcoRII CCWGG 2 cut(s) 201, 851
EcoRV GATATC 1 cut(s) 742
EcoT14I CCWWGG 5 cut(s) 388, 465, 646, 709, 819
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 5 cut(s) 388, 465, 646, 709, 819
FaeI CATG 2 cut(s) 524, 1204
FalI AAGNNNNNCTT 2 cut(s) 1240, 1272
FaqI GGGAC 2 cut(s) 415, 522
FatI CATG 2 cut(s) 520, 1200
FauI CCCGC 1 cut(s) 1228
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 184, 569, 726
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 764, 1037, 1280
GlaI GCGC 1 cut(s) 553
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 2 cut(s) 387, 806
HapII CCGG 1 cut(s) 892
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 554
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 2 cut(s) 524, 1204
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HinfI GANTC 3 cut(s) 277, 546, 1168
HpaII CCGG 1 cut(s) 892
HphI GGTGA 2 cut(s) 457, 1177
Hpy166II GTNNAC 7 cut(s) 80, 110, 170, 250, 602, 1009, 1253
Hpy188I TCNGA 5 cut(s) 67, 793, 902, 922, 1173
Hpy188III TCNNGA 3 cut(s) 1037, 1260, 1292
Hpy8I GTNNAC 7 cut(s) 80, 110, 170, 250, 602, 1009, 1253
HpyAV CCTTC 5 cut(s) 155, 1070, 1161, 1178, 1266
HpyCH4III ACNGT 2 cut(s) 254, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 1224, 1293
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 2 cut(s) 524, 1204
HspAI GCGC 1 cut(s) 552
Kzo9I GATC 4 cut(s) 726, 823, 1023, 1144
LmnI GCTCC 2 cut(s) 25, 392
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 206, 704
MaeI CTAG 3 cut(s) 764, 1037, 1280
MalI GATC 4 cut(s) 728, 825, 1025, 1146
MboI GATC 4 cut(s) 726, 823, 1023, 1144
MboII GAAGA 6 cut(s) 127, 491, 1025, 1052, 1085, 1193
MflI RGATCY 2 cut(s) 726, 1023
MhlI GDGCHC 2 cut(s) 319, 574
MlsI TGGCCA 1 cut(s) 806
MluCI AATT 8 cut(s) 281, 368, 380, 637, 693, 1089, 1264, 1287
MluNI TGGCCA 1 cut(s) 806
MmeI TCCRAC 5 cut(s) 45, 523, 632, 1158, 1300
MnlI CCTC 8 cut(s) 51, 158, 298, 348, 464, 956, 1215, 1231
Mox20I TGGCCA 1 cut(s) 806
MroXI GAANNNNTTC 2 cut(s) 421, 1287
MscI TGGCCA 1 cut(s) 806
MseI TTAA 6 cut(s) 284, 351, 411, 1086, 1196, 1268
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 806
MspA1I CMGCKG 1 cut(s) 1235
MspI CCGG 1 cut(s) 892
MspR9I CCNGG 3 cut(s) 203, 853, 892
Mva1269I GAATGC 2 cut(s) 152, 1125
MvaI CCWGG 2 cut(s) 203, 853
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 892
NdeII GATC 4 cut(s) 726, 823, 1023, 1144
NlaIII CATG 2 cut(s) 524, 1204
NlaIV GGNNCC 6 cut(s) 69, 127, 394, 728, 1136, 1230
PasI CCCWGGG 1 cut(s) 202
PctI GAATGC 2 cut(s) 152, 1125
PdmI GAANNNNTTC 2 cut(s) 421, 1287
PfeI GAWTC 3 cut(s) 277, 546, 1168
PflMI CCANNNNNTGG 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 890
PkrI GCNGC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 574
Psp6I CCWGG 2 cut(s) 201, 851
PspGI CCWGG 2 cut(s) 201, 851
PspN4I GGNNCC 6 cut(s) 69, 127, 394, 728, 1136, 1230
PspPI GGNCC 1 cut(s) 1229
PstI CTGCAG 2 cut(s) 238, 1144
PsuI RGATCY 2 cut(s) 726, 1023
RsaI GTAC 6 cut(s) 136, 216, 463, 869, 945, 1252
RsaNI GTAC 6 cut(s) 135, 215, 462, 868, 944, 1251
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 574
SaqAI TTAA 6 cut(s) 284, 351, 411, 1086, 1196, 1268
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 726, 823, 1023, 1144
Sau96I GGNCC 1 cut(s) 1229
ScrFI CCNGG 3 cut(s) 203, 853, 892
SduI GDGCHC 2 cut(s) 319, 574
SfaNI GCATC 2 cut(s) 206, 704
SfcI CTRYAG 5 cut(s) 234, 250, 861, 928, 1140
SinI GGWCC 1 cut(s) 1229
SmiI ATTTAAAT 1 cut(s) 1269
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 8 cut(s) 281, 368, 380, 637, 693, 1089, 1264, 1287
SsiI CCGC 4 cut(s) 443, 554, 849, 1235
SspMI CTAG 3 cut(s) 764, 1037, 1280
SstI GAGCTC 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 201, 851, 890
StyI CCWWGG 5 cut(s) 388, 465, 646, 709, 819
SwaI ATTTAAAT 1 cut(s) 1269
TaaI ACNGT 2 cut(s) 254, 406
TaqI TCGA 1 cut(s) 535
TasI AATT 8 cut(s) 281, 368, 380, 637, 693, 1089, 1264, 1287
TatI WGTACW 2 cut(s) 214, 1250
TfiI GAWTC 3 cut(s) 277, 546, 1168
Tru1I TTAA 6 cut(s) 284, 351, 411, 1086, 1196, 1268
Tru9I TTAA 6 cut(s) 284, 351, 411, 1086, 1196, 1268
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 5 cut(s) 198, 507, 604, 609, 1017
TspGWI ACGGA 1 cut(s) 739
Van91I CCANNNNNTGG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 1229
XapI RAATTY 1 cut(s) 1264
XbaI TCTAGA 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 249
XmnI GAANNNNTTC 2 cut(s) 421, 1287
XspI CTAG 3 cut(s) 764, 1037, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.