Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005817

Physical Location & Seq

Genomic Coordinates Forward (+)

1242500 .. 1243358

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCATATAGATGCGTATGTATTGTGTAGAGTGTTCTTCAAGCAAAACAATACAGGGAGCAGATATGCACCATTCTTGGAAGAAGAGTGGGATGATGATAATGGTGAAAGAGTTGCGATCCATGTTCCAGATGACGGTCCATTGCCTCTTTGTGTCCTCAACAAAGAAGCTCCATTGCCTCTCATCCAATACAAACGCAAGCGCCGAATCAGCTCAAGTCAAACCACTCAAGACCACCGTTCCTTCACAGAAACAATCATTGACAGTACTGCTTCCGCTGAGCCGCTCGATATCTCAGAACGAATTGCATTAAGAGCGCTCAACGGTATGTTAGATGATCTGGAGAAGGAGCAAGAACCAGTTGTTGTGGATGGCAATAAAATCAACGAGATTCAACAGGAAAGTCAGTTGCAGAGAAAGAAACTCATAGATCTGAACCTCAAAGAAGACGCTCCATCGCCTCTTTGTGTCGTCAACAAAGAAACTCCATCACCTCTCAAATATATGATCGATGATCTGGAGAAGGAACAAGAACCAGCCACCAAGAGGATCAACGATCTGGTACTGAAGGAGAATGACGAGATAGTTGTGTTCAGAGAGATGCAAGAGCGTGAAAGTATGAAGGCAGAAATGGAGATAAGCTTTCTTGAAGCGCAAATTGATGCGTTGGATAGAAAAATTGATCATCCTCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

232

Amino Acids

26.78

Weight (kDa)

4.8

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10480 AT3G10480 AT3G10480 AT3G10490 AT3G10490 AT3G10490 AT3G10490 AT5G04400
fragaria_vesca	FvH4_7g06500 FvH4_7g06500
malus_domestica	MD02G1243900.v1.1 MD07G1073100.v1.1
prunus_persica	Prupe.2G091300_v2.0.a1
pyrus_communis	pycom02g20990 pycom07g05640
rosa_chinensis	RchiOBHm_Chr1g0334881
rosa_laevigata	RLG00000029412
rosa_multiflora	Rmu_co8372589.1_g000001 Rmu_sc0000574.1_g000048
rosa_roxburghii	Rroxscaffold_4G00316380
rosa_rugosa	Rorug01G0117500 Rorug01G0117600 Rorug01G0117700
rosa_samantha	Rh1AG141200 Rh1BG108700 Rh1CG133100 Rh1DG145600
rosa_wichuraiana	Rw1G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	286
AciI	CCGC	2 cut(s)	276, 284
AclWI	GGATC	2 cut(s)	112, 557
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	268, 564
AfeI	AGCGCT	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	134, 546
AgsI	TTSAA	3 cut(s)	40, 395, 650
AluBI	AGCT	3 cut(s)	170, 213, 642
AluI	AGCT	3 cut(s)	170, 213, 642
AlwI	GGATC	2 cut(s)	112, 557
Aor51HI	AGCGCT	1 cut(s)	318
AspLEI	GCGC	3 cut(s)	204, 319, 655
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	116, 483
AvaII	GGWCC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	3 cut(s)	365, 463, 496
BclI	TGATCA	1 cut(s)	682
BfoI	RGCGCY	2 cut(s)	205, 320
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	1 cut(s)	284
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmsI	GCATC	2 cut(s)	591, 652
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	362, 539
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	199, 213
Bsa29I	ATCGAT	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 546
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	140, 173
BseCI	ATCGAT	1 cut(s)	510
BseGI	GGATG	4 cut(s)	97, 183, 376, 685
BseLI	CCNNNNNNNGG	2 cut(s)	134, 546
BseMI	GCAATG	2 cut(s)	140, 173
BseMII	CTCAG	2 cut(s)	270, 309
BseNI	ACTGG	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	134, 546
Bsp143I	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	276, 284
BspCNI	CTCAG	2 cut(s)	271, 308
BspDI	ATCGAT	1 cut(s)	510
BspPI	GGATC	2 cut(s)	112, 557
BsrBI	CCGCTC	1 cut(s)	286
BsrDI	GCAATG	2 cut(s)	140, 173
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
Bst4CI	ACNGT	4 cut(s)	137, 239, 266, 326
Bst6I	CTCTTC	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	279, 295
BstF5I	GGATG	4 cut(s)	97, 183, 376, 685
BstH2I	RGCGCY	2 cut(s)	205, 320
BstHHI	GCGC	3 cut(s)	204, 319, 655
BstKTI	GATC	8 cut(s)	120, 340, 433, 510, 517, 552, 559, 685
BstMBI	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 314
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	510
BsuTUI	ATCGAT	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	97, 183, 376, 685
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	3 cut(s)	204, 319, 655
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	2 cut(s)	267, 563
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	170, 213, 283, 539, 642
CviKI_1	RGCY	5 cut(s)	170, 213, 283, 539, 642
CviQI	GTAC	2 cut(s)	267, 563
DdeI	CTNAG	2 cut(s)	279, 295
DpnI	GATC	8 cut(s)	119, 339, 432, 509, 516, 551, 558, 684
DpnII	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	137
Eco47III	AGCGCT	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	587
EcoRV	GATATC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	125
FatI	CATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	4 cut(s)	104, 170, 383, 672
Fsp4HI	GCNGC	1 cut(s)	284
GlaI	GCGC	3 cut(s)	203, 318, 654
GluI	GCNGC	1 cut(s)	284
GsuI	CTGGAG	2 cut(s)	362, 539
HaeII	RGCGCY	2 cut(s)	205, 320
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	3 cut(s)	204, 319, 655
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	3 cut(s)	202, 317, 653
HinP1I	GCGC	3 cut(s)	202, 317, 653
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	2 cut(s)	207, 391
HphI	GGTGA	2 cut(s)	116, 483
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	298, 435, 596
Hpy188III	TCNNGA	5 cut(s)	128, 230, 341, 518, 647
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	5 cut(s)	253, 340, 517, 562, 616
HpyCH4III	ACNGT	4 cut(s)	137, 239, 266, 326
HpyCH4V	TGCA	5 cut(s)	4, 68, 308, 412, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 314
HpyF3I	CTNAG	2 cut(s)	279, 295
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	3 cut(s)	202, 317, 653
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
LmnI	GCTCC	4 cut(s)	57, 175, 349, 457
LpnPI	CCDG	8 cut(s)	39, 141, 326, 372, 383, 503, 545, 549
LweI	GCATC	2 cut(s)	591, 652
MalI	GATC	8 cut(s)	119, 339, 432, 509, 516, 551, 558, 684
MbiI	CCGCTC	1 cut(s)	286
MboI	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
MboII	GAAGA	4 cut(s)	28, 92, 95, 458
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	3 cut(s)	303, 657, 678
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	8 cut(s)	156, 167, 189, 449, 471, 504, 540, 699
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	210, 314
NdeII	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
NlaIII	CATG	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	207, 391
PkrI	GCNGC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	268, 564
RsaNI	GTAC	2 cut(s)	267, 563
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	8 cut(s)	117, 337, 430, 507, 514, 549, 556, 682
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	268
SetI	ASST	5 cut(s)	172, 215, 441, 496, 644
SfaNI	GCATC	2 cut(s)	591, 652
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	214, 228
SmoI	CTYRAG	2 cut(s)	214, 228
Sse9I	AATT	3 cut(s)	303, 657, 678
SsiI	CCGC	2 cut(s)	276, 284
TaaI	ACNGT	4 cut(s)	137, 239, 266, 326
TaqI	TCGA	2 cut(s)	288, 510
TasI	AATT	3 cut(s)	303, 657, 678
TatI	WGTACW	1 cut(s)	266
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	207, 391
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.