Rh1AG141200

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005817
Physical Location & Seq
Forward (+)
26706215 .. 26713844
7630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG141200.1

Sequence Viewer

Length: 1155 bp
ATGGGTTGTAAAGGTAAGTCGAGCTTGAAGAGCAGGGACCAGGAGTACTATTTCTTCAGTGCATTGGACAAGAAGTATGGAAATGGGGCAAGGATGAATAGGGCTACGCATCTAGGGTACTGGAAGGCCACTGGTAATGACAGGCCTGTCAAGCACAACAATAAGACTGTTGGGATGAAGAAAACTTTGGTTTTTCATAGTGGCAGAGCTCCAGATGGCAAGAGGACTAATTGGGTCATGCATGAGTATAGGCTTGTTGATACGGAAATGGAAAAACCTGGAAATGGTGTTCCTCAGGATGCGTATGTGTTGTGTAGGGTATTTCATAAAAGTAATATAGGACCACCAAATGGGCATCGATATGCGCCTTTTGTTGAGGAGGAATGGGATGATGAAAAGTTAACTTTCGTTCCTGGAGAAGTGGCTAGGGATGACACAGTAGTTAGTCGTGATTCCGTTGGAAATCGTTGCGATGCAGTTAAGGTAGGAAATGATCATGATTCCGTTGTTGGAGGAAATCATCGGGATGTACCTATGGTAGGAAATGGTCATGATTCAGTTGTTGGAGGAAATCATTGCGATATAGCTATGGCAGGAAATGGTCATGATTCAGTTGTTGGAGGAAATCGTCGCGATGTAGTTGTGATAGGAAATGGCCATGATTCAGTTGTCGGAGGTGCTACTCGTGATGCAGTTGTAGCAAATGGTTGTCATGCAGTTGTTGTAGCAAATGGTCGTGATACAGTTGTTGGAAATGGTCATCATGCAGCTGTTGGAGGAAATGGTCATGCTGCTGCCTGTATTGAAGAAAAAGTTCATGCTGCTGTGGATATTGATCAAAAAGATCATGTTGCGGCAGTTGTTGAACAAAAAGATAATGCTTCTGCAAGTATTGAACAAAAAGATCATGATGTCTGTCTTGGTGGCGGCCCTTCTGTTGATGGACATGTTCAGGACACTATGATGGAAGTAGATGGTCATGGAACTACCGAGGAAGGAAATGTTCATGGAAGCATTAGAGGAAATGGTCATGATGGGCGCAGCGCAGGGAACTATTTTGTGCAGGTTTGTGCTTTTCACTCTAGTGCTGTTGTCTTTCCAAATTATCATAAAGTATTGGCGTTTCCTGTGGAGTCTGAAGTTTGCCCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0002237 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006396 GO:0006464 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009648 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009987 GO:0010033 GO:0010228 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016577 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0034720 GO:0035194 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060966 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070918 GO:0070988 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901699 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

384

Amino Acids

41.03

Weight (kDa)

6.12

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 85 4e-24 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
Acc36I ACCTGC 1 cut(s) 1054
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 633
AciI CCGC 2 cut(s) 854, 927
AcoI YGGCCR 1 cut(s) 655
AcuI CTGAAG 1 cut(s) 40
AfaI GTAC 3 cut(s) 47, 119, 531
AfiI CCNNNNNNNGG 3 cut(s) 284, 350, 539
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 4 cut(s) 28, 806, 866, 896
AjnI CCWGG 3 cut(s) 39, 277, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AleI CACNNNNGTG 1 cut(s) 1083
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 4 cut(s) 24, 209, 587, 770
AluI AGCT 4 cut(s) 24, 209, 587, 770
Alw21I GWGCWC 1 cut(s) 211
AoxI GGCC 4 cut(s) 126, 143, 655, 928
ApeKI GCWGC 5 cut(s) 767, 791, 794, 821, 1041
Asp700I GAANNNNTTC 1 cut(s) 813
AspLEI GCGC 3 cut(s) 367, 1041, 1046
AspS9I GGNCC 3 cut(s) 37, 341, 929
AvaII GGWCC 2 cut(s) 37, 341
AxyI CCTNAGG 1 cut(s) 294
BaeI ACNNNNGTAYC 2 cut(s) 732, 765
BalI TGGCCA 1 cut(s) 657
BanII GRGCYC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BauI CACGAG 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 5 cut(s) 778, 779, 781, 808, 1053
BccI CCATC 5 cut(s) 209, 935, 958, 968, 1028
BciT130I CCWGG 3 cut(s) 41, 279, 414
BclI TGATCA 2 cut(s) 493, 835
BfaI CTAG 3 cut(s) 113, 426, 1083
BfuAI ACCTGC 1 cut(s) 1054
BisI GCNGC 7 cut(s) 768, 792, 795, 822, 855, 928, 1042
BlsI GCNGC 7 cut(s) 769, 793, 796, 823, 856, 929, 1043
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 41, 279, 414
Bme18I GGWCC 2 cut(s) 37, 341
BmgT120I GGNCC 3 cut(s) 37, 341, 929
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 41, 279, 414
BmsI GCATC 5 cut(s) 118, 289, 364, 463, 679
BpmI CTGGAG 2 cut(s) 195, 435
Bsa29I ATCGAT 1 cut(s) 358
BsaBI GATNNNNATC 1 cut(s) 834
BsaJI CCNNGG 1 cut(s) 990
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 350, 539
Bse1I ACTGG 2 cut(s) 125, 136
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 1 cut(s) 834
BseBI CCWGG 3 cut(s) 41, 279, 414
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 990
BseGI GGATG 6 cut(s) 99, 180, 304, 394, 436, 532
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 3 cut(s) 284, 350, 539
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 125, 136
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 5 cut(s) 778, 779, 781, 808, 1053
BsgI GTGCAG 1 cut(s) 1082
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 4 cut(s) 128, 145, 657, 930
BshVI ATCGAT 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 3 cut(s) 284, 350, 539
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 4 cut(s) 128, 145, 657, 930
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 4 cut(s) 493, 835, 844, 904
Bsp68I TCGCGA 1 cut(s) 633
BspACI CCGC 2 cut(s) 854, 927
BspANI GGCC 4 cut(s) 128, 145, 657, 930
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 358
BspFNI CGCG 1 cut(s) 633
BspHI TCATGA 5 cut(s) 496, 550, 604, 907, 1030
BspLI GGNNCC 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 1054
BspQI GCTCTTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 574
BsrI ACTGG 2 cut(s) 125, 136
BssECI CCNNGG 1 cut(s) 990
BssMI GATC 4 cut(s) 493, 835, 844, 904
BssSI CACGAG 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 3 cut(s) 41, 279, 414
Bst4CI ACNGT 3 cut(s) 169, 439, 745
Bst6I CTCTTC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 6 cut(s) 99, 180, 304, 394, 436, 532
BstFNI CGCG 1 cut(s) 633
BstHHI GCGC 3 cut(s) 367, 1041, 1046
BstKTI GATC 4 cut(s) 496, 838, 847, 907
BstMBI GATC 4 cut(s) 493, 835, 844, 904
BstMWI GCNNNNNNNGC 3 cut(s) 30, 151, 698
BstNI CCWGG 3 cut(s) 41, 279, 414
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 3 cut(s) 39, 277, 412
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 5 cut(s) 778, 779, 781, 808, 1053
Bsu15I ATCGAT 1 cut(s) 358
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 4 cut(s) 128, 145, 657, 930
BsuTUI ATCGAT 1 cut(s) 358
BtgZI GCGATG 2 cut(s) 486, 648
BtsCI GGATG 6 cut(s) 99, 180, 304, 394, 436, 532
BtsIMutI CAGTG 2 cut(s) 64, 129
BtuMI TCGCGA 1 cut(s) 633
BveI ACCTGC 1 cut(s) 1054
CciI TCATGA 5 cut(s) 496, 550, 604, 907, 1030
CfoI GCGC 3 cut(s) 367, 1041, 1046
Cfr13I GGNCC 3 cut(s) 37, 341, 929
ClaI ATCGAT 1 cut(s) 358
Csp6I GTAC 3 cut(s) 46, 118, 530
CviQI GTAC 3 cut(s) 46, 118, 530
DdeI CTNAG 1 cut(s) 294
DpnI GATC 4 cut(s) 495, 837, 846, 906
DpnII GATC 4 cut(s) 493, 835, 844, 904
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 209
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 37, 341
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 3 cut(s) 39, 277, 412
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 211
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 50
FbaI TGATCA 2 cut(s) 493, 835
Fnu4HI GCNGC 7 cut(s) 768, 792, 795, 822, 855, 928, 1042
FokI GGATG 6 cut(s) 106, 187, 311, 401, 443, 539
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 7 cut(s) 768, 792, 795, 822, 855, 928, 1042
FspBI CTAG 3 cut(s) 113, 426, 1083
GlaI GCGC 3 cut(s) 366, 1040, 1045
GluI GCNGC 7 cut(s) 768, 792, 795, 822, 855, 928, 1042
GsuI CTGGAG 2 cut(s) 195, 435
HaeIII GGCC 4 cut(s) 128, 145, 657, 930
HhaI GCGC 3 cut(s) 367, 1041, 1046
Hin6I GCGC 3 cut(s) 365, 1039, 1044
HinP1I GCGC 3 cut(s) 365, 1039, 1044
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 6 cut(s) 452, 500, 554, 608, 662, 1133
HpaI GTTAAC 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 2 cut(s) 674, 1138
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 1 cut(s) 633
HpyAV CCTTC 3 cut(s) 118, 942, 989
HpyCH4III ACNGT 3 cut(s) 169, 439, 745
HpyCH4V TGCA 8 cut(s) 62, 241, 476, 692, 716, 767, 887, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 151, 698
HpyF3I CTNAG 1 cut(s) 294
HspAI GCGC 3 cut(s) 365, 1039, 1044
Ksp22I TGATCA 2 cut(s) 493, 835
KspAI GTTAAC 1 cut(s) 402
Kzo9I GATC 4 cut(s) 493, 835, 844, 904
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 214
Lsp1109I GCAGC 5 cut(s) 778, 779, 781, 808, 1053
LweI GCATC 5 cut(s) 118, 289, 364, 463, 679
MaeI CTAG 3 cut(s) 113, 426, 1083
MalI GATC 4 cut(s) 495, 837, 846, 906
MboI GATC 4 cut(s) 493, 835, 844, 904
MboII GAAGA 4 cut(s) 40, 46, 190, 818
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 657
MluCI AATT 2 cut(s) 229, 1102
MluNI TGGCCA 1 cut(s) 657
MlyI GAGTC 1 cut(s) 1142
MmeI TCCRAC 7 cut(s) 439, 490, 544, 598, 652, 730, 754
Mox20I TGGCCA 1 cut(s) 657
Mph1103I ATGCAT 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 813
MscI TGGCCA 1 cut(s) 657
MseI TTAA 2 cut(s) 401, 480
MslI CAYNNNNRTG 4 cut(s) 360, 525, 962, 1083
Msp20I TGGCCA 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 770
MspR9I CCNGG 3 cut(s) 41, 279, 414
MteI GCGCNGCGC 1 cut(s) 1042
MvaI CCWGG 3 cut(s) 41, 279, 414
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 3 cut(s) 30, 151, 698
NdeII GATC 4 cut(s) 493, 835, 844, 904
NlaIV GGNNCC 1 cut(s) 38
NruI TCGCGA 1 cut(s) 633
NsiI ATGCAT 1 cut(s) 243
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 1 cut(s) 1083
PagI TCATGA 5 cut(s) 496, 550, 604, 907, 1030
PceI AGGCCT 1 cut(s) 145
PciI ACATGT 1 cut(s) 946
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 5 cut(s) 452, 500, 554, 608, 662
PflMI CCANNNNNTGG 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 412
PkrI GCNGC 7 cut(s) 769, 793, 796, 823, 856, 929, 1043
PleI GAGTC 1 cut(s) 1141
PpsI GAGTC 1 cut(s) 1141
PscI ACATGT 1 cut(s) 946
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 39, 277, 412
PspGI CCWGG 3 cut(s) 39, 277, 412
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 3 cut(s) 37, 341, 929
PvuII CAGCTG 1 cut(s) 770
RruI TCGCGA 1 cut(s) 633
RsaI GTAC 3 cut(s) 47, 119, 531
RsaNI GTAC 3 cut(s) 46, 118, 530
RseI CAYNNNNRTG 4 cut(s) 360, 525, 962, 1083
SacI GAGCTC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 401, 480
SatI GCNGC 7 cut(s) 768, 792, 795, 822, 855, 928, 1042
Sau3AI GATC 4 cut(s) 493, 835, 844, 904
Sau96I GGNCC 3 cut(s) 37, 341, 929
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 1 cut(s) 1142
ScrFI CCNGG 3 cut(s) 41, 279, 414
SduI GDGCHC 1 cut(s) 211
SfaNI GCATC 5 cut(s) 118, 289, 364, 463, 679
SinI GGWCC 2 cut(s) 37, 341
SmiMI CAYNNNNRTG 4 cut(s) 360, 525, 962, 1083
Sse9I AATT 2 cut(s) 229, 1102
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 2 cut(s) 854, 927
SspMI CTAG 3 cut(s) 113, 426, 1083
SstI GAGCTC 1 cut(s) 211
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 3 cut(s) 39, 277, 412
TaaI ACNGT 3 cut(s) 169, 439, 745
TaqI TCGA 2 cut(s) 20, 358
TasI AATT 2 cut(s) 229, 1102
TatI WGTACW 1 cut(s) 45
TauI GCSGC 2 cut(s) 857, 930
TfiI GAWTC 5 cut(s) 452, 500, 554, 608, 662
Tru1I TTAA 2 cut(s) 401, 480
Tru9I TTAA 2 cut(s) 401, 480
TscAI CASTG 2 cut(s) 64, 136
TseI GCWGC 5 cut(s) 767, 791, 794, 821, 1041
TspDTI ATGAA 7 cut(s) 110, 185, 191, 314, 408, 806, 995
TspGWI ACGGA 3 cut(s) 278, 445, 493
TspRI CASTG 2 cut(s) 64, 136
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 37, 341
XagI CCTNNNNNAGG 1 cut(s) 537
XceI RCATGY 1 cut(s) 950
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 3 cut(s) 113, 426, 1083
ZrmI AGTACT 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.