AT3G11840

ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
3736578 .. 3738208
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11840.1

Sequence Viewer

Length: 1371 bp
ATGGATCAAGAAGAGGAAGAGATCGAGATTCCTAATTACTTTATCTGCCCAATCTCACTAGAGATCATGAAAGATCCAGTCACGACCGTTTCTGGCATCACTTACGACCGTCAAAACATCGTTAAATGGCTCGAAAAGGTCCCTTCTTGTCCCGTCACGAAGCAACCTCTTCCCTTAGACTCCGATCTTACACCTAACCACATGCTTCGCCGTCTTATCCAACACTGGTGCGTCGAGAACGAGACACGTGGCGTTGTCAGAATCTCTACACCTCGAGTTCCTCCTGGAAAACTTAACGTCGTCGAAGAGATCAAGAATCTCAAAAAGTTCGGCCAAGAAGCCTTAGGAAGAGAAGAAACGTTGCAGAAGCTTGAAGTTTTGGCAATGGACGGAAATAACAGAAGATTGATGTGTGAATGTGGCGTACATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTAGTGAAGACGAAGACGGACGACGTCGTATCAAAGGACTAGATGAGTCTCTTCGTCTTCTTCACTTGATCGGTATTCCATCAAACGACGCAAAAACAATCTTGATGGAAAACGATCGAGTTATGGAATCGTTGACTTGGGTTTTACACCAAGAAGACTTTCTCAGTAAGGCTTATACAATTGTGCTATTGAGGAATCTAACGGAATACACTTCCTCTCATATCGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATCATAGGGTTTCTCAAGGATGTTGTAAATAGTGTTAATCGGACGAGCCCTACCGTGAGAGAAACGGTACAGTCATCATCAAGGCCTAGCTTGGGAAAAACGGAACCATCAAAACTTGATCATAGTTTGGTCATCAAACAAGCGGTGACTGCCGCGCTGATGATTCTTTTAGAGACTTCTTCGTGGAGCCGAAACCGATCACTCCTTGTGGATCTCGGTGCGGTTTCTGAACTCATCGAACTCGAAATAAGCTACACTGGCGAGAAAAGAATCACAGAACTTATGTTAGGAGTTTTATCTCGTTTATGTTGCTGTGCGAACGGTAGAGCCGAGATTCTTGCTCATAGGGGCGGAATCGCGGTTGTGACAAAGCGGCTATTGAGGGTTTCACCTGCGGCAGACGATAGAGCTATCTCTATCCTAACTACAGTGTCAAAATTCTCGCCGGAAAACATGGTGGTGGAAGAGATGGTTAATGTTGGGACGGTAGAGAAGCTCTGTTCCGTTCTAGGAATGGATTGTGGTTTGAACTTGAAGGAGAAAGCAAAAGAGATACTAAAAGATCATTTTGATGAGTGGAAGAAGTTTCCATGTATTGACATAACTCTTCTCACTAAGCTGCTAAGCATCTCACCCAAAGGGCCAAAGATCTAA

Protein Analysis

456

Amino Acids

51.29

Weight (kDa)

6.55

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 10 - 81 1.8e-21 U-box domain
ARM_PUB PF25598 99 - 446 3.3e-99 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1117
AatII GACGTC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 1117
AccII CGCG 2 cut(s) 872, 1076
AciI CCGC 7 cut(s) 860, 870, 938, 1068, 1076, 1090, 1112
AclI AACGTT 1 cut(s) 359
AclWI GGATC 4 cut(s) 12, 68, 725, 936
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 1154
AcvI CACGTG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 484
AfaI GTAC 3 cut(s) 426, 460, 786
AfiI CCNNNNNNNGG 1 cut(s) 809
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 4 cut(s) 374, 697, 1246, 1252
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AluBI AGCT 6 cut(s) 370, 807, 969, 1127, 1213, 1336
AluI AGCT 6 cut(s) 370, 807, 969, 1127, 1213, 1336
Alw26I GTCTC 3 cut(s) 236, 513, 884
AlwI GGATC 4 cut(s) 12, 68, 725, 936
Ama87I CYCGRG 2 cut(s) 273, 701
AoxI GGCC 3 cut(s) 331, 800, 1358
ApeKI GCWGC 1 cut(s) 1336
ApoI RAATTY 1 cut(s) 1154
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 2 cut(s) 139, 1358
AsuHPI GGTGA 3 cut(s) 874, 1098, 1341
AvaI CYCGRG 2 cut(s) 273, 701
AvaII GGWCC 1 cut(s) 139
AxyI CCTNAGG 1 cut(s) 343
BanII GRGCYC 1 cut(s) 767
BbrPI CACGTG 1 cut(s) 248
BbsI GAAGAC 4 cut(s) 474, 480, 509, 621
BbvI GCAGC 1 cut(s) 1323
BccI CCATC 4 cut(s) 547, 559, 832, 1180
BceAI ACGGC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 1037, 1071
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 835
BcoDI GTCTC 3 cut(s) 236, 513, 884
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 5 cut(s) 59, 462, 500, 804, 1226
BfmI CTRYAG 1 cut(s) 1143
BfuAI ACCTGC 1 cut(s) 1117
BglII AGATCT 1 cut(s) 1365
BisI GCNGC 4 cut(s) 870, 1091, 1113, 1337
BlpI GCTNAGC 1 cut(s) 1340
BlsI GCNGC 4 cut(s) 871, 1092, 1114, 1338
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 2 cut(s) 273, 701
BmgT120I GGNCC 2 cut(s) 139, 1358
BmiI GGNNCC 3 cut(s) 141, 822, 905
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 105, 1353
BpiI GAAGAC 4 cut(s) 474, 480, 509, 621
Bpu1102I GCTNAGC 1 cut(s) 1340
BpuEI CTTGAG 1 cut(s) 716
BsaAI YACGTR 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse1I ACTGG 3 cut(s) 77, 230, 979
Bse21I CCTNAGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 3 cut(s) 77, 230, 979
BseXI GCAGC 1 cut(s) 1323
Bsh1236I CGCG 2 cut(s) 872, 1076
Bsh1285I CGRYCG 3 cut(s) 87, 109, 577
BshFI GGCC 3 cut(s) 333, 802, 1360
BsiEI CGRYCG 3 cut(s) 87, 109, 577
BsiHKCI CYCGRG 2 cut(s) 273, 701
BsiSI CCGG 1 cut(s) 1163
BslFI GGGAC 3 cut(s) 125, 135, 1213
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 3 cut(s) 236, 513, 884
BsmFI GGGAC 3 cut(s) 125, 135, 1213
BsnI GGCC 3 cut(s) 333, 802, 1360
BsoBI CYCGRG 2 cut(s) 273, 701
Bsp1286I GDGCHC 1 cut(s) 767
Bsp1720I GCTNAGC 1 cut(s) 1340
BspACI CCGC 7 cut(s) 860, 870, 938, 1068, 1076, 1090, 1112
BspANI GGCC 3 cut(s) 333, 802, 1360
BspCNI CTCAG 1 cut(s) 636
BspFNI CGCG 2 cut(s) 872, 1076
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 141, 822, 905
BspMI ACCTGC 1 cut(s) 1117
BspPI GGATC 4 cut(s) 12, 68, 725, 936
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 3 cut(s) 77, 230, 979
BssNI GRCGYC 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 8 cut(s) 88, 110, 772, 784, 789, 1040, 1147, 1204
Bst6I CTCTTC 8 cut(s) 6, 12, 174, 300, 343, 516, 1176, 1329
BstACI GRCGYC 1 cut(s) 484
BstBAI YACGTR 1 cut(s) 248
BstDEI CTNAG 5 cut(s) 175, 343, 623, 1332, 1340
BstF5I GGATG 1 cut(s) 742
BstFNI CGCG 2 cut(s) 872, 1076
BstHHI GCGC 1 cut(s) 874
BstMAI GTCTC 3 cut(s) 236, 513, 884
BstMCI CGRYCG 3 cut(s) 87, 109, 577
BstMWI GCNNNNNNNGC 2 cut(s) 866, 975
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 1143
BstUI CGCG 2 cut(s) 872, 1076
BstV1I GCAGC 1 cut(s) 1323
BstV2I GAAGAC 4 cut(s) 474, 480, 509, 621
BstX2I RGATCY 3 cut(s) 73, 928, 1365
BstYI RGATCY 3 cut(s) 73, 928, 1365
Bsu36I CCTNAGG 1 cut(s) 343
BsuRI GGCC 3 cut(s) 333, 802, 1360
BtsCI GGATG 1 cut(s) 742
BtsIMutI CAGTG 3 cut(s) 223, 972, 1152
BveI ACCTGC 1 cut(s) 1117
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 874
Cfr13I GGNCC 2 cut(s) 139, 1358
CseI GACGC 2 cut(s) 220, 557
Csp6I GTAC 3 cut(s) 425, 459, 785
CviAII CATG 4 cut(s) 67, 202, 1171, 1308
CviQI GTAC 3 cut(s) 425, 459, 785
DdeI CTNAG 5 cut(s) 175, 343, 623, 1332, 1340
DraI TTTAAA 1 cut(s) 712
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 8 cut(s) 6, 12, 174, 300, 343, 516, 1176, 1329
EarI CTCTTC 8 cut(s) 6, 12, 174, 300, 343, 516, 1176, 1329
EciI GGCGGA 1 cut(s) 1083
Eco147I AGGCCT 1 cut(s) 802
Eco24I GRGCYC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 248
Eco81I CCTNAGG 1 cut(s) 343
Eco88I CYCGRG 2 cut(s) 273, 701
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 767
FaeI CATG 4 cut(s) 70, 205, 1174, 1311
FaqI GGGAC 3 cut(s) 125, 135, 1213
FatI CATG 4 cut(s) 66, 201, 1170, 1307
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 4 cut(s) 870, 1091, 1113, 1337
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 4 cut(s) 870, 1091, 1113, 1337
FspBI CTAG 5 cut(s) 59, 462, 500, 804, 1226
GlaI GCGC 1 cut(s) 873
GluI GCNGC 4 cut(s) 870, 1091, 1113, 1337
HaeIII GGCC 3 cut(s) 333, 802, 1360
HapII CCGG 1 cut(s) 1163
HgaI GACGC 2 cut(s) 220, 557
HhaI GCGC 1 cut(s) 874
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 4 cut(s) 70, 205, 1174, 1311
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 368
HpaII CCGG 1 cut(s) 1163
HphI GGTGA 3 cut(s) 874, 1098, 1341
Hpy166II GTNNAC 2 cut(s) 459, 594
Hpy188I TCNGA 4 cut(s) 184, 260, 759, 946
Hpy188III TCNNGA 9 cut(s) 8, 25, 67, 82, 157, 235, 313, 562, 701
Hpy8I GTNNAC 2 cut(s) 459, 594
Hpy99I CGWCG 6 cut(s) 236, 302, 305, 486, 489, 551
HpyAV CCTTC 2 cut(s) 153, 1246
HpyCH4III ACNGT 8 cut(s) 88, 110, 772, 784, 789, 1040, 1147, 1204
HpyCH4IV ACGT 4 cut(s) 247, 297, 359, 484
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 866, 975
HpyF3I CTNAG 5 cut(s) 175, 343, 623, 1332, 1340
HpySE526I ACGT 4 cut(s) 247, 297, 359, 484
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 4 cut(s) 70, 205, 1174, 1311
HspAI GCGC 1 cut(s) 872
Ksp22I TGATCA 1 cut(s) 835
LmnI GCTCC 1 cut(s) 903
LpnPI CCDG 8 cut(s) 78, 90, 211, 270, 297, 960, 1122, 1176
Lsp1109I GCAGC 1 cut(s) 1323
LweI GCATC 2 cut(s) 105, 1353
MaeI CTAG 5 cut(s) 59, 462, 500, 804, 1226
MaeII ACGT 4 cut(s) 247, 297, 359, 484
MaeIII GTNAC 4 cut(s) 79, 154, 862, 1081
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 3 cut(s) 73, 928, 1365
MhlI GDGCHC 1 cut(s) 767
MluCI AATT 3 cut(s) 34, 639, 1154
MlyI GAGTC 2 cut(s) 173, 515
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 7, 177, 282, 291, 645, 685, 1092
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 5 cut(s) 123, 294, 711, 753, 1191
MslI CAYNNNNRTG 2 cut(s) 1175, 1287
MspI CCGG 1 cut(s) 1163
MspR9I CCNGG 1 cut(s) 285
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 2 cut(s) 872, 1076
MwoI GCNNNNNNNGC 2 cut(s) 866, 975
NlaIII CATG 4 cut(s) 70, 205, 1174, 1311
NlaIV GGNNCC 3 cut(s) 141, 822, 905
NmeAIII GCCGAG 1 cut(s) 1072
NmuCI GTSAC 4 cut(s) 79, 154, 862, 1081
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 273
PagI TCATGA 1 cut(s) 66
PaqCI CACCTGC 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 1044
PdmI GAANNNNTTC 1 cut(s) 618
PflFI GACNNNGTC 1 cut(s) 483
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 4 cut(s) 871, 1092, 1114, 1338
Ple19I CGATCG 1 cut(s) 577
PleI GAGTC 2 cut(s) 173, 514
PmaCI CACGTG 1 cut(s) 248
PmlI CACGTG 1 cut(s) 248
PpsI GAGTC 2 cut(s) 173, 514
Ppu21I YACGTR 1 cut(s) 248
PpuMI RGGWCCY 1 cut(s) 139
Psp1406I AACGTT 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 283
PspCI CACGTG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 3 cut(s) 141, 822, 905
PspPI GGNCC 2 cut(s) 139, 1358
PspPPI RGGWCCY 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 273
PsuI RGATCY 3 cut(s) 73, 928, 1365
PsyI GACNNNGTC 1 cut(s) 483
PvuI CGATCG 1 cut(s) 577
RsaI GTAC 3 cut(s) 426, 460, 786
RsaNI GTAC 3 cut(s) 425, 459, 785
RseI CAYNNNNRTG 2 cut(s) 1175, 1287
SaqAI TTAA 5 cut(s) 123, 294, 711, 753, 1191
SatI GCNGC 4 cut(s) 870, 1091, 1113, 1337
Sau96I GGNCC 2 cut(s) 139, 1358
SchI GAGTC 2 cut(s) 173, 515
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 767
SfaNI GCATC 2 cut(s) 105, 1353
SfcI CTRYAG 1 cut(s) 1143
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 273
SmiMI CAYNNNNRTG 2 cut(s) 1175, 1287
SmlI CTYRAG 2 cut(s) 273, 731
SmoI CTYRAG 2 cut(s) 273, 731
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 3 cut(s) 34, 639, 1154
SseBI AGGCCT 1 cut(s) 802
SsiI CCGC 7 cut(s) 860, 870, 938, 1068, 1076, 1090, 1112
SspMI CTAG 5 cut(s) 59, 462, 500, 804, 1226
StuI AGGCCT 1 cut(s) 802
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 8 cut(s) 88, 110, 772, 784, 789, 1040, 1147, 1204
TaiI ACGT 4 cut(s) 250, 300, 362, 487
TaqI TCGA 8 cut(s) 24, 132, 234, 274, 303, 577, 954, 960
TasI AATT 3 cut(s) 34, 639, 1154
TatI WGTACW 1 cut(s) 458
TauI GCSGC 3 cut(s) 872, 1093, 1115
Tru1I TTAA 5 cut(s) 123, 294, 711, 753, 1191
Tru9I TTAA 5 cut(s) 123, 294, 711, 753, 1191
TscAI CASTG 3 cut(s) 230, 979, 1152
TseFI GTSAC 4 cut(s) 79, 154, 862, 1081
TseI GCWGC 1 cut(s) 1336
Tsp45I GTSAC 4 cut(s) 79, 154, 862, 1081
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 5 cut(s) 405, 492, 677, 833, 1210
TspRI CASTG 3 cut(s) 230, 979, 1152
Tth111I GACNNNGTC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 1154
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 5 cut(s) 59, 462, 500, 804, 1226
ZraI GACGTC 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.