Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004027

Physical Location & Seq

Genomic Coordinates Reverse (-)

27922958 .. 27924296

Gene Structure 1339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00405500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGCTGAAGACATTGAAGTTCCTCAGTATTTCGTATGCCCGATCTCCCTTCAGATCATGACCGATCCTGTAACAGCTATTACAGGCATCACATACAACCGAGACAGCATCGAGCACTGGCTATTCCACGCCAAGAACACCACCTGCCCAGTAACCAAACAGCCGCTCCCCAAAGACTCCGAGTTAACCCCGAATCACACGTTACGCCGGTTGATCCAGGCGTGGTGCACAGACAATGCCTCTAAAGGCGTGGATAGAATTCCAACTCCGAAACCGCCTCTCAGCAAGGCCCAAGTCGTGAAGCTGCTCAAGGACTTTCCGGACCCGCAGTTCCAGCTAAAAATCATTAGAAAACTGGAGCTGCTCGCTACCGAAAACGAAGGTAACCTAAAGTACATGGCGGAAGCCGGTGTGGCTAAAACCATGCTGTTATTCATCGCAACATGTTATAAAAATGGTAGGGTAGATGGTCTGGAAGAAGCTCTCAGCGTGCTTCACTTTGTTCGGATTTCACCCGAAGAATTAAATCATCTTTTGTTAGAGAACGATCAGATCATGGACTCGTTGACGTGGGTTTTGAGCCGTGAAATGAAGAACCAAATCGAGGTGAACACCCACGTCATGTTGGTGCTGAAGTCCATAATTCAAAAGGTCAGTTCAAGCGTGCTAGAAACCCTCAATCCTGAATTTTTCAGGAACATCTTAGGGGTTTTGAGAAATGGTGCCGTTACACAACAAGGCACCAATGCGGCTTTACAAGTGATGCTAGACACTTGTCGCTGTGGAAGCAATCGGATCAAAATGGTGGAATCCGGCGCAGTTTATGAGCTCGTTGAGCTCGAATTGGGTGGTGCAGTTCAGGAAAAGAAAACAACTGAGCTCGTTTTGGGGATACTGTTCCATTTGTGTTCTTGTGCCGCAGGGAGAGCTCAGTTTCTTAGTCATAAAGCAAGCATATTTGTCGTGTCCGAGAGGATCTTGAAGGGTTCGCAGGCGGCCGACGACCGAGCTGTTCTGATCCTTTACTTGATAAGCAAGTACTCTGGAAATAAGATAGTACTTCAGGAAATGTTGGAGTTTGGAACAGTGAAGAAGCTTATAACGCTGATCCAAGTCGATTGTGCTCCATATTTGAAAGAAAAGGCGAGGGAAATTCTTAGTTCACATTCCAGTGAGTGGAAGAACTCTCCTTGTTTTCCTCGCAGCTCAGTCACAGGTCATGATATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

410

Amino Acids

45.89

Weight (kDa)

7.12

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
U-box	PF04564	7 - 79	3.3e-18	U-box domain
ARM_PUB	PF25598	112 - 405	6.3e-57	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11840
fragaria_vesca	FvH4_3g26390 FvH4_6g20390
malus_domestica	MD11G1173500.v1.1 MD12G1040800.v1.1 MD14G1039900.v1.1
prunus_persica	Prupe.6G145200_v2.0.a1 Prupe.6G145200_v2.0.a1 Prupe.7G094100_v2.0.a1
pyrus_communis	pycom11g14800 pycom12g03490 pycom14g03410
rosa_chinensis	RchiOBHm_Chr3g0476021 RchiOBHm_Chr5g0048571
rosa_laevigata	RLG00000023791 RLG00000034535
rosa_multiflora	Rmu_sc0000585.1_g000008 Rmu_sc0007341.1_g000034
rosa_roxburghii	Rroxscaffold_1G00033260 Rroxscaffold_6G00405500
rosa_rugosa	Rorug03G0152800 Rorug05G0239500
rosa_samantha	Rh3AG203700 Rh3BG233600 Rh3CG229000 Rh3DG229100 Rh5AG319200 Rh5BG329600 Rh5CG355500 Rh5DG340800
rosa_wichuraiana	Rw0G021240 Rw3G018510 Rw5G029850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	450, 1100
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AccB1I	GGYRCC	2 cut(s)	722, 740
AccB7I	CCANNNNNTGG	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	7 cut(s)	164, 275, 326, 401, 749, 918, 995
AclWI	GGATC	6 cut(s)	59, 208, 803, 983, 1012, 1102
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	3 cut(s)	258, 686, 1152
AcuI	CTGAAG	4 cut(s)	27, 35, 653, 1046
AfaI	GTAC	3 cut(s)	395, 1040, 1059
AfiI	CCNNNNNNNGG	2 cut(s)	604, 1176
AflIII	ACRYGT	2 cut(s)	198, 443
AgsI	TTSAA	5 cut(s)	17, 647, 660, 982, 1135
AjiI	CACGTC	2 cut(s)	570, 619
AjnI	CCWGG	1 cut(s)	216
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
Alw21I	GWGCWC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
Alw26I	GTCTC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	226
AlwI	GGATC	6 cut(s)	59, 208, 803, 983, 1012, 1102
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	2 cut(s)	288, 996
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	304, 361, 1203
ApoI	RAATTY	3 cut(s)	258, 686, 1152
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	1 cut(s)	818
AspS9I	GGNCC	2 cut(s)	289, 322
AsuHPI	GGTGA	2 cut(s)	504, 619
AvaII	GGWCC	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	2 cut(s)	722, 740
BanII	GRGCYC	4 cut(s)	831, 840, 882, 931
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
BbvI	GCAGC	3 cut(s)	291, 348, 1215
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	2 cut(s)	567, 710
BcgI	CGANNNNNNTGC	2 cut(s)	943, 977
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	885
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	668, 767
BfuAI	ACCTGC	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	885
BglI	GCCNNNNNGGC	1 cut(s)	413
BisI	GCNGC	7 cut(s)	164, 305, 362, 750, 918, 996, 1204
BlsI	GCNGC	7 cut(s)	165, 306, 363, 751, 919, 997, 1205
BmcAI	AGTACT	2 cut(s)	1040, 1059
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	322
BmgBI	CACGTC	2 cut(s)	570, 619
BmgT120I	GGNCC	2 cut(s)	289, 322
BmiI	GGNNCC	3 cut(s)	324, 724, 742
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	3 cut(s)	96, 117, 753
BmuI	ACTGGG	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	604, 1176
Bse118I	RCCGGY	2 cut(s)	207, 407
Bse1I	ACTGG	4 cut(s)	122, 149, 360, 1170
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	604, 1176
BseMII	CTCAG	6 cut(s)	38, 295, 499, 867, 944, 1221
BseNI	ACTGG	4 cut(s)	122, 149, 360, 1170
BseSI	GKGCMC	1 cut(s)	230
BseX3I	CGGCCG	1 cut(s)	996
BseXI	GCAGC	3 cut(s)	291, 348, 1215
BsgI	GTGCAG	1 cut(s)	873
Bsh1285I	CGRYCG	2 cut(s)	999, 1006
BshFI	GGCC	2 cut(s)	290, 998
BshNI	GGYRCC	2 cut(s)	722, 740
BsiEI	CGRYCG	2 cut(s)	999, 1006
BsiHKAI	GWGCWC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
BsiSI	CCGG	4 cut(s)	208, 320, 408, 813
BslI	CCNNNNNNNGG	2 cut(s)	604, 1176
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	290, 998
Bsp1286I	GDGCHC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
Bsp13I	TCCGGA	1 cut(s)	319
BspACI	CCGC	7 cut(s)	164, 275, 326, 401, 749, 918, 995
BspANI	GGCC	2 cut(s)	290, 998
BspCNI	CTCAG	6 cut(s)	37, 294, 498, 868, 943, 1220
BspEI	TCCGGA	1 cut(s)	319
BspHI	TCATGA	2 cut(s)	57, 1219
BspLI	GGNNCC	3 cut(s)	324, 724, 742
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	6 cut(s)	59, 208, 803, 983, 1012, 1102
BspT107I	GGYRCC	2 cut(s)	722, 740
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	2 cut(s)	207, 407
BsrI	ACTGG	4 cut(s)	122, 149, 360, 1170
BssAI	RCCGGY	2 cut(s)	207, 407
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	897, 1087
BstC8I	GCNNGC	5 cut(s)	366, 491, 665, 952, 993
BstDEI	CTNAG	9 cut(s)	24, 281, 485, 703, 876, 930, 938, 1157, 1207
BstEII	GGTNACC	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	818
BstMAI	GTCTC	1 cut(s)	96
BstMCI	CGRYCG	2 cut(s)	999, 1006
BstMWI	GCNNNNNNNGC	6 cut(s)	334, 413, 786, 835, 926, 1102
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	447
BstPAI	GACNNNNGTC	1 cut(s)	774
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	291, 348, 1215
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	975
BstYI	RGATCY	1 cut(s)	975
BstZI	CGGCCG	1 cut(s)	996
BsuI	GTATCC	1 cut(s)	885
BsuRI	GGCC	2 cut(s)	290, 998
BtgZI	GCGATG	1 cut(s)	421
BtrI	CACGTC	2 cut(s)	570, 619
BtsIMutI	CAGTG	3 cut(s)	115, 1092, 1177
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	5 cut(s)	366, 491, 665, 952, 993
CciI	TCATGA	2 cut(s)	57, 1219
CfoI	GCGC	1 cut(s)	818
Cfr10I	RCCGGY	2 cut(s)	207, 407
Cfr13I	GGNCC	2 cut(s)	289, 322
Csp6I	GTAC	3 cut(s)	394, 1039, 1058
CviAII	CATG	7 cut(s)	58, 397, 424, 444, 556, 622, 1220
CviQI	GTAC	3 cut(s)	394, 1039, 1058
DdeI	CTNAG	9 cut(s)	24, 281, 485, 703, 876, 930, 938, 1157, 1207
EaeI	YGGCCR	1 cut(s)	996
EagI	CGGCCG	1 cut(s)	996
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	4 cut(s)	829, 838, 880, 929
EclXI	CGGCCG	1 cut(s)	996
Eco24I	GRGCYC	4 cut(s)	831, 840, 882, 931
Eco47I	GGWCC	1 cut(s)	322
Eco52I	CGGCCG	1 cut(s)	996
Eco53kI	GAGCTC	4 cut(s)	829, 838, 880, 929
Eco57I	CTGAAG	4 cut(s)	27, 35, 653, 1046
Eco91I	GGTNACC	1 cut(s)	383
EcoICRI	GAGCTC	4 cut(s)	829, 838, 880, 929
EcoO65I	GGTNACC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	216
EcoT38I	GRGCYC	4 cut(s)	831, 840, 882, 931
FaeI	CATG	7 cut(s)	61, 400, 427, 447, 559, 625, 1223
FatI	CATG	7 cut(s)	57, 396, 423, 443, 555, 621, 1219
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	7 cut(s)	164, 305, 362, 750, 918, 996, 1204
FriOI	GRGCYC	4 cut(s)	831, 840, 882, 931
Fsp4HI	GCNGC	7 cut(s)	164, 305, 362, 750, 918, 996, 1204
FspBI	CTAG	2 cut(s)	668, 767
GlaI	GCGC	1 cut(s)	817
GluI	GCNGC	7 cut(s)	164, 305, 362, 750, 918, 996, 1204
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	290, 998
HapII	CCGG	4 cut(s)	208, 320, 408, 813
HhaI	GCGC	1 cut(s)	818
Hin1II	CATG	7 cut(s)	61, 400, 427, 447, 559, 625, 1223
Hin6I	GCGC	1 cut(s)	816
HinP1I	GCGC	1 cut(s)	816
HincII	GTYRAC	2 cut(s)	186, 567
HindII	GTYRAC	2 cut(s)	186, 567
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	4 cut(s)	176, 193, 560, 809
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	4 cut(s)	208, 320, 408, 813
HphI	GGTGA	2 cut(s)	504, 619
Hpy166II	GTNNAC	5 cut(s)	186, 228, 567, 610, 1163
Hpy188I	TCNGA	8 cut(s)	54, 181, 270, 507, 552, 795, 970, 1017
Hpy8I	GTNNAC	5 cut(s)	186, 228, 567, 610, 1163
Hpy99I	CGWCG	1 cut(s)	1004
HpyAV	CCTTC	3 cut(s)	59, 374, 976
HpyCH4III	ACNGT	2 cut(s)	897, 1087
HpyCH4IV	ACGT	3 cut(s)	200, 569, 618
HpyCH4V	TGCA	2 cut(s)	228, 854
HpyF10VI	GCNNNNNNNGC	6 cut(s)	334, 413, 786, 835, 926, 1102
HpyF3I	CTNAG	9 cut(s)	24, 281, 485, 703, 876, 930, 938, 1157, 1207
HpySE526I	ACGT	3 cut(s)	200, 569, 618
Hsp92II	CATG	7 cut(s)	61, 400, 427, 447, 559, 625, 1223
HspAI	GCGC	1 cut(s)	816
Kpn2I	TCCGGA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	171, 358, 1129
Lsp1109I	GCAGC	3 cut(s)	291, 348, 1215
LweI	GCATC	3 cut(s)	96, 117, 753
MaeI	CTAG	2 cut(s)	668, 767
MaeII	ACGT	3 cut(s)	200, 569, 618
MaeIII	GTNAC	6 cut(s)	70, 151, 201, 383, 727, 1210
MbiI	CCGCTC	1 cut(s)	166
MboII	GAAGA	6 cut(s)	20, 488, 530, 604, 1102, 1192
MflI	RGATCY	1 cut(s)	975
MhlI	GDGCHC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
MluCI	AATT	6 cut(s)	258, 521, 642, 686, 842, 1152
MlyI	GAGTC	2 cut(s)	170, 554
MmeI	TCCRAC	2 cut(s)	287, 1053
MnlI	CCTC	8 cut(s)	33, 250, 288, 598, 686, 966, 1140, 1209
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	2 cut(s)	185, 524
MslI	CAYNNNNRTG	2 cut(s)	626, 1170
MspI	CCGG	4 cut(s)	208, 320, 408, 813
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	334, 413, 786, 835, 926, 1102
NlaIII	CATG	7 cut(s)	61, 400, 427, 447, 559, 625, 1223
NlaIV	GGNNCC	3 cut(s)	324, 724, 742
NmuCI	GTSAC	1 cut(s)	1210
NspI	RCATGY	1 cut(s)	447
PagI	TCATGA	2 cut(s)	57, 1219
PaqCI	CACCTGC	1 cut(s)	152
PciI	ACATGT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PfeI	GAWTC	2 cut(s)	193, 809
PflMI	CCANNNNNTGG	1 cut(s)	1176
PkrI	GCNGC	7 cut(s)	165, 306, 363, 751, 919, 997, 1205
PleI	GAGTC	2 cut(s)	170, 554
PpsI	GAGTC	2 cut(s)	170, 554
PscI	ACATGT	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	774
PsiI	TTATAA	2 cut(s)	450, 1100
Psp124BI	GAGCTC	4 cut(s)	831, 840, 882, 931
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	3 cut(s)	324, 724, 742
PspPI	GGNCC	2 cut(s)	289, 322
PsuI	RGATCY	1 cut(s)	975
RsaI	GTAC	3 cut(s)	395, 1040, 1059
RsaNI	GTAC	3 cut(s)	394, 1039, 1058
RseI	CAYNNNNRTG	2 cut(s)	626, 1170
SacI	GAGCTC	4 cut(s)	831, 840, 882, 931
SaqAI	TTAA	2 cut(s)	185, 524
SatI	GCNGC	7 cut(s)	164, 305, 362, 750, 918, 996, 1204
Sau96I	GGNCC	2 cut(s)	289, 322
ScaI	AGTACT	2 cut(s)	1040, 1059
SchI	GAGTC	2 cut(s)	170, 554
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	7 cut(s)	117, 230, 831, 840, 882, 931, 1126
SfaNI	GCATC	3 cut(s)	96, 117, 753
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	626, 1170
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	6 cut(s)	258, 521, 642, 686, 842, 1152
SsiI	CCGC	7 cut(s)	164, 275, 326, 401, 749, 918, 995
SspMI	CTAG	2 cut(s)	668, 767
SstI	GAGCTC	4 cut(s)	831, 840, 882, 931
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	897, 1087
TaiI	ACGT	3 cut(s)	203, 572, 621
TaqI	TCGA	4 cut(s)	111, 603, 840, 1116
TaqII	GACCGA	2 cut(s)	77, 1020
TasI	AATT	6 cut(s)	258, 521, 642, 686, 842, 1152
TatI	WGTACW	3 cut(s)	393, 1038, 1057
TauI	GCSGC	4 cut(s)	166, 752, 920, 998
TfiI	GAWTC	2 cut(s)	193, 809
Tru1I	TTAA	2 cut(s)	185, 524
Tru9I	TTAA	2 cut(s)	185, 524
TscAI	CASTG	3 cut(s)	122, 1092, 1177
TseFI	GTSAC	1 cut(s)	1210
TseI	GCWGC	3 cut(s)	304, 361, 1203
Tsp45I	GTSAC	1 cut(s)	1210
TspDTI	ATGAA	2 cut(s)	424, 605
TspRI	CASTG	3 cut(s)	122, 1092, 1177
Van91I	CCANNNNNTGG	1 cut(s)	1176
VneI	GTGCAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	3 cut(s)	258, 686, 1152
XceI	RCATGY	1 cut(s)	447
XspI	CTAG	2 cut(s)	668, 767
ZrmI	AGTACT	2 cut(s)	1040, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.