FvH4_3g26390

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
19429349 .. 19430533
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26390.t1

Sequence Viewer

Length: 1185 bp
ATGAAAGACCCCGTAACGGTGGAGACCGGCATCACCTACGACCGAGAAAGCATCGAGCAGTGGTTCTTGACAACCAATGACATGTCGTGTCCAGTGACCAAGCAGCCCTTACCAACAGACAACAGCAATGACTCCATGACGCCAAATCACACCCTACGCCGGCTCATCCAGCAGTGGTGCACTATTAACGCCATAAACGGAGTGGACCGAATTCCGACGCCGAAGTTTCCACTGAACAGGATCTACGCCGTTAAGCTGGTCAAGGATCTTGGGGTGCCTCATTTGCAGCAAGCCGCCTTGAAGAAAATGGAAGCGCTTGCATCGGAGAATGAGAGAAACAGGAGATCGATGGCTGAAGCAGGTGTAGGAAAGGCTTTGATTTTGTTCATTGTGACATGTTTCCAGGAAGGAAAAACCAACGGTCTTTTAGAAGCTTTGAGAGTTCTTCATCACGTTTGGAGTGTAGATGAGGAAACTAAGGTTGCTGTAATAGGAAACAACGACTTTCTGGAATCTTTGACATGGGTTCTAGGGTTGAATCATGATAATGGTCATAACCATATGCTGCTCCTGAAAATCGAAGCGATACTCGTATTGAAAATGACGATACCAGTCGTCAATACAGCGCAGCTCGAGCGGTTAAAGCTGGAATTCTTCATGAATATCTCAACGCTACTGTCGGAAAAGAAAATCTCACAGAAAGCTGTCAAATCTGCATTACATGTGCTGGTAGAAGCATGCCCATGGGGAAGAAACAGAATGAAAATAGTCGAATCCGGTGCAATCTTCCAGCTCATCGAACTAGAATTACTCAAACCCGAGAAGCACGTTACCGAGCTGATCTTTAATTTGTTGGCGAATTTATGTTGCTGTGCTGATGGGAGAGCTCAGTTCCTAAAGCATGATGGCAGCATAGCAATGGTGTCTAAGAGAATCCTTAGGGTTTCGCATGCTACAGATGATCTGGGCGTTCAAATACTTTCATCAATCTCGAAGTTCTCGGCGACACATGGAGTTGTTCTAGAGATGCTGTTGGTAGGAGCTGTGTCAAAGCTTTGCATGGTAATGCAAGCAGATTGTCCAGCCTATTTGAAGAAAAAGGTTAGAGGGATCTTACGTTTGCATTCTAATGTGTGGAACAATTCACCTTGTATTGCCGTATATCTTTTAACAAGACCTAGGTAA

Protein Analysis

395

Amino Acids

44.17

Weight (kDa)

8.93

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 1 - 61 4.3e-10 U-box domain
ARM_PUB PF25598 95 - 391 1e-62 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 108 - 303 1.6e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 637
AciI CCGC 2 cut(s) 294, 637
AclWI GGATC 3 cut(s) 248, 273, 1118
AcsI RAATTY 3 cut(s) 210, 650, 859
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 2 cut(s) 140, 218
AfeI AGCGCT 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 16, 159
AflIII ACRYGT 3 cut(s) 81, 395, 721
AgsI TTSAA 5 cut(s) 301, 538, 598, 974, 1093
AjnI CCWGG 1 cut(s) 402
Alw21I GWGCWC 2 cut(s) 182, 889
Alw26I GTCTC 1 cut(s) 17
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 3 cut(s) 248, 273, 1118
Ama87I CYCGRG 2 cut(s) 632, 818
Aor51HI AGCGCT 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 5 cut(s) 103, 286, 565, 628, 909
ApoI RAATTY 3 cut(s) 210, 650, 859
AspA2I CCTAGG 1 cut(s) 1178
AspLEI GCGC 2 cut(s) 316, 628
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 25, 1137
AvaI CYCGRG 2 cut(s) 632, 818
AvaII GGWCC 1 cut(s) 205
AvrII CCTAGG 1 cut(s) 1178
AxyI CCTNAGG 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 182
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 889
Bbv12I GWGCWC 2 cut(s) 182, 889
BbvI GCAGC 5 cut(s) 115, 298, 552, 640, 921
BccI CCATC 3 cut(s) 343, 872, 899
BceAI ACGGC 2 cut(s) 233, 1142
BcgI CGANNNNNNTGC 2 cut(s) 761, 795
BciT130I CCWGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 4 cut(s) 530, 803, 1022, 1179
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 317
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 6 cut(s) 104, 287, 294, 566, 629, 910
BlnI CCTAGG 1 cut(s) 1178
BlsI GCNGC 6 cut(s) 105, 288, 295, 567, 630, 911
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 2 cut(s) 632, 818
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 4 cut(s) 39, 60, 329, 1017
Bsa29I ATCGAT 1 cut(s) 347
BsaHI GRCGYC 2 cut(s) 140, 218
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 743, 1178
BsaWI WCCGGW 1 cut(s) 776
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 159
Bse118I RCCGGY 2 cut(s) 26, 159
Bse1I ACTGG 2 cut(s) 92, 611
Bse21I CCTNAGG 1 cut(s) 938
Bse3DI GCAATG 2 cut(s) 133, 924
BseBI CCWGG 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 347
BseDI CCNNGG 2 cut(s) 743, 1178
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 16, 159
BseMI GCAATG 2 cut(s) 133, 924
BseMII CTCAG 1 cut(s) 902
BseNI ACTGG 2 cut(s) 92, 611
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 5 cut(s) 115, 298, 552, 640, 921
Bsh1285I CGRYCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 274
BshVI ATCGAT 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 182, 889
BsiHKCI CYCGRG 2 cut(s) 632, 818
BsiSI CCGG 3 cut(s) 27, 160, 777
BslI CCNNNNNNNGG 2 cut(s) 16, 159
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 1123
Bso31I GGTCTC 1 cut(s) 17
BsoBI CYCGRG 2 cut(s) 632, 818
Bsp1286I GDGCHC 2 cut(s) 182, 889
Bsp143I GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
Bsp19I CCATGG 1 cut(s) 743
BspACI CCGC 2 cut(s) 294, 637
BspCNI CTCAG 1 cut(s) 901
BspDI ATCGAT 1 cut(s) 347
BspHI TCATGA 2 cut(s) 541, 657
BspLI GGNNCC 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 3 cut(s) 248, 273, 1118
BspT107I GGYRCC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 637
BsrDI GCAATG 2 cut(s) 133, 924
BsrFI RCCGGY 2 cut(s) 26, 159
BsrI ACTGG 2 cut(s) 92, 611
BssAI RCCGGY 2 cut(s) 26, 159
BssECI CCNNGG 2 cut(s) 743, 1178
BssMI GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
BssNI GRCGYC 2 cut(s) 140, 218
BssT1I CCWWGG 2 cut(s) 743, 1178
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 3 cut(s) 19, 422, 678
BstACI GRCGYC 2 cut(s) 140, 218
BstC8I GCNNGC 6 cut(s) 161, 291, 318, 739, 951, 1071
BstDEI CTNAG 4 cut(s) 477, 888, 927, 938
BstDSI CCRYGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 2 cut(s) 316, 628
BstKTI GATC 6 cut(s) 243, 268, 347, 843, 964, 1113
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 169, 283, 634, 643
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 5 cut(s) 85, 399, 725, 741, 953
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 5 cut(s) 115, 298, 552, 640, 921
BstX2I RGATCY 3 cut(s) 240, 265, 1110
BstYI RGATCY 3 cut(s) 240, 265, 1110
Bsu15I ATCGAT 1 cut(s) 347
Bsu36I CCTNAGG 1 cut(s) 938
BsuTUI ATCGAT 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 743
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 2 cut(s) 65, 179
BtsIMutI CAGTG 4 cut(s) 65, 99, 179, 230
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 6 cut(s) 161, 291, 318, 739, 951, 1071
CciI TCATGA 2 cut(s) 541, 657
CfoI GCGC 2 cut(s) 316, 628
Cfr10I RCCGGY 2 cut(s) 26, 159
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 347
CseI GACGC 2 cut(s) 148, 226
DdeI CTNAG 4 cut(s) 477, 888, 927, 938
DpnI GATC 6 cut(s) 242, 267, 346, 842, 963, 1112
DpnII GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
Ecl136II GAGCTC 1 cut(s) 887
Eco130I CCWWGG 2 cut(s) 743, 1178
Eco24I GRGCYC 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 375
Eco81I CCTNAGG 1 cut(s) 938
Eco88I CYCGRG 2 cut(s) 632, 818
EcoICRI GAGCTC 1 cut(s) 887
EcoRI GAATTC 2 cut(s) 210, 650
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 2 cut(s) 743, 1178
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 2 cut(s) 743, 1178
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FauNDI CATATG 1 cut(s) 561
Fnu4HI GCNGC 6 cut(s) 104, 287, 294, 566, 629, 910
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 6 cut(s) 104, 287, 294, 566, 629, 910
FspBI CTAG 4 cut(s) 530, 803, 1022, 1179
GlaI GCGC 2 cut(s) 315, 627
GluI GCNGC 6 cut(s) 104, 287, 294, 566, 629, 910
HaeII RGCGCY 1 cut(s) 317
HapII CCGG 3 cut(s) 27, 160, 777
HgaI GACGC 2 cut(s) 148, 226
HhaI GCGC 2 cut(s) 316, 628
Hin1I GRCGYC 2 cut(s) 140, 218
Hin6I GCGC 2 cut(s) 314, 626
HinP1I GCGC 2 cut(s) 314, 626
HindIII AAGCTT 2 cut(s) 432, 1052
HinfI GANTC 5 cut(s) 131, 512, 538, 773, 933
HpaII CCGG 3 cut(s) 27, 160, 777
HphI GGTGA 2 cut(s) 25, 1137
Hpy166II GTNNAC 2 cut(s) 180, 205
Hpy188I TCNGA 3 cut(s) 216, 325, 682
Hpy188III TCNNGA 7 cut(s) 67, 509, 542, 571, 658, 991, 1022
Hpy8I GTNNAC 2 cut(s) 180, 205
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 3 cut(s) 19, 422, 678
HpyCH4IV ACGT 3 cut(s) 453, 828, 1117
HpyCH4V TGCA 8 cut(s) 180, 286, 320, 716, 782, 1059, 1069, 1123
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 283, 634, 643
HpyF3I CTNAG 4 cut(s) 477, 888, 927, 938
HpySE526I ACGT 3 cut(s) 453, 828, 1117
Hsp92I GRCGYC 2 cut(s) 140, 218
HspAI GCGC 2 cut(s) 314, 626
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Kzo9I GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
LmnI GCTCC 2 cut(s) 573, 1040
Lsp1109I GCAGC 5 cut(s) 115, 298, 552, 640, 921
LweI GCATC 4 cut(s) 39, 60, 329, 1017
MaeI CTAG 4 cut(s) 530, 803, 1022, 1179
MaeII ACGT 3 cut(s) 453, 828, 1117
MaeIII GTNAC 4 cut(s) 13, 94, 391, 829
MalI GATC 6 cut(s) 242, 267, 346, 842, 963, 1112
MbiI CCGCTC 1 cut(s) 637
MboI GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
MboII GAAGA 6 cut(s) 313, 437, 646, 762, 778, 1105
MflI RGATCY 3 cut(s) 240, 265, 1110
MhlI GDGCHC 2 cut(s) 182, 889
MluCI AATT 6 cut(s) 210, 650, 806, 847, 859, 1141
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 239, 660
MnlI CCTC 3 cut(s) 288, 463, 1100
MroNI GCCGGC 1 cut(s) 159
MseI TTAA 5 cut(s) 186, 252, 641, 846, 1169
MslI CAYNNNNRTG 5 cut(s) 546, 742, 917, 1064, 1128
MspI CCGG 3 cut(s) 27, 160, 777
MspR9I CCNGG 1 cut(s) 404
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 4 cut(s) 169, 283, 634, 643
NaeI GCCGGC 1 cut(s) 161
NcoI CCATGG 1 cut(s) 743
NdeI CATATG 1 cut(s) 561
NdeII GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
NgoMIV GCCGGC 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 980
NmuCI GTSAC 2 cut(s) 94, 391
NspI RCATGY 5 cut(s) 85, 399, 725, 741, 953
PaeI GCATGC 2 cut(s) 741, 953
PaeR7I CTCGAG 1 cut(s) 632
PagI TCATGA 2 cut(s) 541, 657
PaqCI CACCTGC 1 cut(s) 350
PciI ACATGT 3 cut(s) 81, 395, 721
PctI GAATGC 1 cut(s) 1123
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 4 cut(s) 512, 538, 773, 933
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 6 cut(s) 105, 288, 295, 567, 630, 911
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PscI ACATGT 3 cut(s) 81, 395, 721
Psp124BI GAGCTC 1 cut(s) 889
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 205
PspXI VCTCGAGB 1 cut(s) 632
PsrI GAACNNNNNNTAC 4 cut(s) 227, 259, 792, 824
PsuI RGATCY 3 cut(s) 240, 265, 1110
RseI CAYNNNNRTG 5 cut(s) 546, 742, 917, 1064, 1128
SacI GAGCTC 1 cut(s) 889
SaqAI TTAA 5 cut(s) 186, 252, 641, 846, 1169
SatI GCNGC 6 cut(s) 104, 287, 294, 566, 629, 910
Sau3AI GATC 6 cut(s) 240, 265, 344, 840, 961, 1110
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 2 cut(s) 182, 889
SfaNI GCATC 4 cut(s) 39, 60, 329, 1017
SfcI CTRYAG 1 cut(s) 954
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 632
SmiMI CAYNNNNRTG 5 cut(s) 546, 742, 917, 1064, 1128
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 2 cut(s) 741, 953
Sse9I AATT 6 cut(s) 210, 650, 806, 847, 859, 1141
SsiI CCGC 2 cut(s) 294, 637
SspMI CTAG 4 cut(s) 530, 803, 1022, 1179
SstI GAGCTC 1 cut(s) 889
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 743, 1178
TaaI ACNGT 3 cut(s) 19, 422, 678
TaiI ACGT 3 cut(s) 456, 831, 1120
TaqI TCGA 7 cut(s) 54, 347, 579, 633, 771, 798, 992
TaqII GACCGA 2 cut(s) 57, 222
TasI AATT 6 cut(s) 210, 650, 806, 847, 859, 1141
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 4 cut(s) 512, 538, 773, 933
Tru1I TTAA 5 cut(s) 186, 252, 641, 846, 1169
Tru9I TTAA 5 cut(s) 186, 252, 641, 846, 1169
TscAI CASTG 4 cut(s) 65, 99, 179, 237
TseFI GTSAC 2 cut(s) 94, 391
TseI GCWGC 5 cut(s) 103, 286, 565, 628, 909
Tsp45I GTSAC 2 cut(s) 94, 391
TspDTI ATGAA 7 cut(s) 17, 376, 437, 646, 674, 776, 972
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 4 cut(s) 65, 99, 179, 237
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 3 cut(s) 210, 650, 859
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 5 cut(s) 85, 399, 725, 741, 953
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 632
XmaJI CCTAGG 1 cut(s) 1178
XspI CTAG 4 cut(s) 530, 803, 1022, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.