MD11G1173500.v1.1

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
20011545 .. 20012786
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1173500.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGGAGGATATTGAAATAGAAGTACCTCAATATTTCATATGTCCCATCTCTCTCCAGATCATGAAAGACCCCGTAACGGTGGTAACAGGCATCACTTACGACCGGGAAAGCATCGAGCACTGGTTCTTGGCAACCAACGACTTGTCGTGCCCGGTCACAAAGCAGGCCTTGCCAAGAGGCGCCGGCTTGACGCCCAATCACACCCTCCGCAGGCTAATCCAGCAATGGTGCAAAGAAAACGCAACCAACGGGGTTGATTTGATCCCGACCCCAAGACTCCCTCTCGACAAGATCTATCTCACTAGACTTGTTCGGGATCTTGGGGTTTCGCATTTGCAGTTAACTGCACTGAAAAAATTGGAAGCGCTTGTGTTAGAGAACGATGAAAGGACGAGGTTCTCCATGGCCGAAGCAGGTGTTGCCAAGGCAGTGATTTTGCTCGTCATAAGATGTTTCAGGGGAGGTGAAACAAATGGACTTCTAGAAGCTTTTAGAATTTTGCATCATGTTTGGAATGTGAGTGGTGACAATGAAGTCCAACTTCTTGTTAATGGAAACACCGACTTTCTTGATTCTTTGACATGGGTTTTCAGGTGTGGTCTTGATCAGATGGATAATCATCTCCTTGTGAAAAACGAAGCGATACTGGTATCGAAAATGACAATGGAAGTCCTAAGTCCATGTCAGCTCGAGAGGTTGAACCTTGAATTCTTCAAGAATATTGTCATGGTGTTAAAAGAAAAAATTTCACTGAAAGCTGTCAAATCTGCACTCCACATTCTAATAAATGCATGCCCGTGGGGGAGAAACCGAATTAAAATCGTTGAATCCGGTGCAGTCTTCCAGATCATCGAGCTTGAGCTTGCAAAACCCGAAAAGCGTGTAACAGAGCTGATATTCAATCTTTTGGCCAATTTATGTGGCTGTGCTGATGGGAGAGATCAGCTGCTGAAACACGGTGGAGGTATGGCCATGGTGTCTAAAAGAATTCTTAGGGTTTCACCGGCAACAGATGATCCAGCAGTTCATATACTTTCCTCGATCGCGATGTTCTCCGCTACACATAATGTTCTTTCAGAGATGCTGTTGGTTGGAGCAGTGTCAAAGCTGTGCATGGTAATGCAATCAGACTGTGAAGCCTATTTAAAGAAAAAGGTTAGAGGGATCTTAAGGTTGCACTCTAATGTCTGGAACAACTCGCCTTGTATTGCTGTATATCTGATAACAAGGCCTAGGTGGTAG

Protein Analysis

414

Amino Acids

46.42

Weight (kDa)

8.4

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 8 - 80 3.6e-18 U-box domain
ARM_PUB PF25598 113 - 410 1e-57 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 404
AasI GACNNNNNNGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 179
AccII CGCG 1 cut(s) 1046
AciI CCGC 2 cut(s) 208, 1056
AclWI GGATC 4 cut(s) 256, 324, 1010, 1172
AcoI YGGCCR 3 cut(s) 405, 909, 969
AcsI RAATTY 4 cut(s) 495, 707, 744, 987
AcyI GRCGYC 2 cut(s) 180, 191
AfaI GTAC 1 cut(s) 24
AfeI AGCGCT 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 76, 210
AflII CTTAAG 1 cut(s) 1168
AgsI TTSAA 6 cut(s) 14, 700, 707, 715, 827, 901
AluBI AGCT 8 cut(s) 488, 688, 758, 856, 862, 892, 946, 1108
AluI AGCT 8 cut(s) 488, 688, 758, 856, 862, 892, 946, 1108
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 4 cut(s) 256, 324, 1010, 1172
AlwNI CAGNNNCTG 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 689
Aor51HI AGCGCT 1 cut(s) 366
AoxI GGCC 5 cut(s) 165, 405, 909, 969, 1229
ApeKI GCWGC 1 cut(s) 946
ApoI RAATTY 4 cut(s) 495, 707, 744, 987
AspA2I CCTAGG 1 cut(s) 1232
AspLEI GCGC 2 cut(s) 182, 367
AsuC2I CCSGG 2 cut(s) 104, 152
AsuHPI GGTGA 3 cut(s) 476, 536, 993
AvaI CYCGRG 1 cut(s) 689
AvrII CCTAGG 1 cut(s) 1232
BaeGI GKGCMC 1 cut(s) 152
BalI TGGCCA 2 cut(s) 911, 971
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 832
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 933
BccI CCATC 3 cut(s) 53, 604, 926
BclI TGATCA 1 cut(s) 604
BcnI CCSGG 2 cut(s) 104, 152
BfaI CTAG 3 cut(s) 303, 482, 1233
BfoI RGCGCY 2 cut(s) 183, 368
BfrI CTTAAG 1 cut(s) 1168
BfuAI ACCTGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 947
BlnI CCTAGG 1 cut(s) 1232
BlsI GCNGC 1 cut(s) 948
Bme1390I CCNGG 2 cut(s) 104, 152
BmeT110I CYCGRG 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 104, 152
BmsI GCATC 4 cut(s) 99, 120, 511, 1071
BpiI GAAGAC 1 cut(s) 832
BpmI CTGGAG 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 878
BpuMI CCSGG 2 cut(s) 104, 152
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 2 cut(s) 180, 191
BsaJI CCNNGG 5 cut(s) 402, 423, 797, 972, 1232
BsaWI WCCGGW 1 cut(s) 830
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 210
Bse118I RCCGGY 2 cut(s) 182, 1003
Bse1I ACTGG 2 cut(s) 125, 651
Bse3DI GCAATG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 618
BseDI CCNNGG 5 cut(s) 402, 423, 797, 972, 1232
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 76, 210
BseMI GCAATG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 125, 651
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 1 cut(s) 933
BsgI GTGCAG 3 cut(s) 330, 753, 855
Bsh1236I CGCG 1 cut(s) 1046
Bsh1285I CGRYCG 2 cut(s) 103, 1044
BshFI GGCC 5 cut(s) 167, 407, 911, 971, 1231
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 2 cut(s) 103, 1044
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 5 cut(s) 103, 152, 183, 831, 1004
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 76, 210
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 5 cut(s) 167, 407, 911, 971, 1231
BsoBI CYCGRG 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 120, 152
Bsp19I CCATGG 2 cut(s) 402, 972
Bsp68I TCGCGA 1 cut(s) 1046
BspACI CCGC 2 cut(s) 208, 1056
BspANI GGCC 5 cut(s) 167, 407, 911, 971, 1231
BspFNI CGCG 1 cut(s) 1046
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 4 cut(s) 256, 324, 1010, 1172
BspT107I GGYRCC 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 1168
BsrDI GCAATG 1 cut(s) 230
BsrFI RCCGGY 2 cut(s) 182, 1003
BsrI ACTGG 2 cut(s) 125, 651
BssAI RCCGGY 2 cut(s) 182, 1003
BssECI CCNNGG 5 cut(s) 402, 423, 797, 972, 1232
BssNI GRCGYC 2 cut(s) 180, 191
BssT1I CCWWGG 4 cut(s) 402, 423, 972, 1232
Bst4CI ACNGT 3 cut(s) 79, 959, 1133
BstACI GRCGYC 2 cut(s) 180, 191
BstAFI CTTAAG 1 cut(s) 1168
BstAPI GCANNNNNTGC 2 cut(s) 169, 419
BstC8I GCNNGC 5 cut(s) 165, 184, 212, 793, 864
BstDEI CTNAG 2 cut(s) 674, 992
BstDSI CCRYGG 3 cut(s) 402, 797, 972
BstFNI CGCG 1 cut(s) 1046
BstH2I RGCGCY 2 cut(s) 183, 368
BstHHI GCGC 2 cut(s) 182, 367
BstMCI CGRYCG 2 cut(s) 103, 1044
BstMWI GCNNNNNNNGC 3 cut(s) 169, 220, 419
BstNSI RCATGY 1 cut(s) 795
BstSCI CCNGG 2 cut(s) 102, 150
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 1046
BstV1I GCAGC 1 cut(s) 933
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 3 cut(s) 291, 316, 1164
BstYI RGATCY 3 cut(s) 291, 316, 1164
BsuRI GGCC 5 cut(s) 167, 407, 911, 971, 1231
BtgI CCRYGG 3 cut(s) 402, 797, 972
BtgZI GCGATG 1 cut(s) 1061
BtsI GCAGTG 2 cut(s) 435, 1104
BtsIMutI CAGTG 5 cut(s) 118, 347, 435, 749, 1104
BtuMI TCGCGA 1 cut(s) 1046
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 5 cut(s) 165, 184, 212, 793, 864
CaiI CAGNNNCTG 1 cut(s) 949
CciI TCATGA 1 cut(s) 60
CfoI GCGC 2 cut(s) 182, 367
Cfr10I RCCGGY 2 cut(s) 182, 1003
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviAII CATG 9 cut(s) 61, 403, 506, 582, 681, 727, 792, 973, 1114
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 674, 992
DinI GGCGCC 1 cut(s) 181
DraI TTTAAA 1 cut(s) 1146
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 3 cut(s) 405, 909, 969
Eco130I CCWWGG 4 cut(s) 402, 423, 972, 1232
Eco147I AGGCCT 2 cut(s) 167, 1231
Eco47III AGCGCT 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 689
EcoRI GAATTC 2 cut(s) 707, 987
EcoT14I CCWWGG 4 cut(s) 402, 423, 972, 1232
EcoT22I ATGCAT 1 cut(s) 793
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
ErhI CCWWGG 4 cut(s) 402, 423, 972, 1232
FaeI CATG 9 cut(s) 64, 406, 509, 585, 684, 730, 795, 976, 1117
FalI AAGNNNNNCTT 4 cut(s) 152, 184, 525, 557
FaqI GGGAC 1 cut(s) 27
FatI CATG 9 cut(s) 60, 402, 505, 581, 680, 726, 791, 972, 1113
FauNDI CATATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 604
Fnu4HI GCNGC 1 cut(s) 947
Fsp4HI GCNGC 1 cut(s) 947
FspBI CTAG 3 cut(s) 303, 482, 1233
GlaI GCGC 2 cut(s) 181, 366
GluI GCNGC 1 cut(s) 947
GsuI CTGGAG 1 cut(s) 38
HaeII RGCGCY 2 cut(s) 183, 368
HaeIII GGCC 5 cut(s) 167, 407, 911, 971, 1231
HapII CCGG 5 cut(s) 103, 152, 183, 831, 1004
HgaI GACGC 1 cut(s) 199
HhaI GCGC 2 cut(s) 182, 367
Hin1I GRCGYC 2 cut(s) 180, 191
Hin1II CATG 9 cut(s) 64, 406, 509, 585, 684, 730, 795, 976, 1117
Hin6I GCGC 2 cut(s) 180, 365
HinP1I GCGC 2 cut(s) 180, 365
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 276, 572, 827
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 5 cut(s) 103, 152, 183, 831, 1004
HphI GGTGA 3 cut(s) 476, 536, 993
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 4 cut(s) 609, 1078, 1129, 1221
Hpy8I GTNNAC 1 cut(s) 342
HpyCH4III ACNGT 3 cut(s) 79, 959, 1133
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 220, 419
HpyF3I CTNAG 2 cut(s) 674, 992
Hsp92I GRCGYC 2 cut(s) 180, 191
Hsp92II CATG 9 cut(s) 64, 406, 509, 585, 684, 730, 795, 976, 1117
HspAI GCGC 2 cut(s) 180, 365
KasI GGCGCC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 1094
Lsp1109I GCAGC 1 cut(s) 933
LweI GCATC 4 cut(s) 99, 120, 511, 1071
MaeI CTAG 3 cut(s) 303, 482, 1233
MaeIII GTNAC 5 cut(s) 73, 82, 154, 524, 883
MboII GAAGA 2 cut(s) 703, 832
MflI RGATCY 3 cut(s) 291, 316, 1164
MhlI GDGCHC 2 cut(s) 120, 152
MlsI TGGCCA 2 cut(s) 911, 971
MluCI AATT 7 cut(s) 356, 495, 707, 744, 813, 913, 987
MluNI TGGCCA 2 cut(s) 911, 971
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 2 cut(s) 562, 1072
Mox20I TGGCCA 2 cut(s) 911, 971
Mph1103I ATGCAT 1 cut(s) 793
MroNI GCCGGC 1 cut(s) 182
MscI TGGCCA 2 cut(s) 911, 971
MseI TTAA 6 cut(s) 341, 549, 734, 816, 1145, 1169
MslI CAYNNNNRTG 3 cut(s) 796, 1118, 1182
Msp20I TGGCCA 2 cut(s) 911, 971
MspA1I CMGCKG 1 cut(s) 946
MspCI CTTAAG 1 cut(s) 1168
MspI CCGG 5 cut(s) 103, 152, 183, 831, 1004
MspR9I CCNGG 2 cut(s) 104, 152
MvnI CGCG 1 cut(s) 1046
MwoI GCNNNNNNNGC 3 cut(s) 169, 220, 419
NaeI GCCGGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 2 cut(s) 104, 152
NcoI CCATGG 2 cut(s) 402, 972
NdeI CATATG 1 cut(s) 38
NgoMIV GCCGGC 1 cut(s) 182
NlaIII CATG 9 cut(s) 64, 406, 509, 585, 684, 730, 795, 976, 1117
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 154, 524
NruI TCGCGA 1 cut(s) 1046
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 795
PaeI GCATGC 1 cut(s) 795
PaeR7I CTCGAG 1 cut(s) 689
PagI TCATGA 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 404
PceI AGGCCT 2 cut(s) 167, 1231
PdiI GCCGGC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 572, 827
PkrI GCNGC 1 cut(s) 948
Ple19I CGATCG 1 cut(s) 1044
PleI GAGTC 1 cut(s) 270
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 949
PsuI RGATCY 3 cut(s) 291, 316, 1164
PvuI CGATCG 1 cut(s) 1044
PvuII CAGCTG 1 cut(s) 946
RruI TCGCGA 1 cut(s) 1046
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 3 cut(s) 796, 1118, 1182
SaqAI TTAA 6 cut(s) 341, 549, 734, 816, 1145, 1169
SatI GCNGC 1 cut(s) 947
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 2 cut(s) 104, 152
SduI GDGCHC 2 cut(s) 120, 152
SfaNI GCATC 4 cut(s) 99, 120, 511, 1071
SfoI GGCGCC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 689
SlaI CTCGAG 1 cut(s) 689
SmiMI CAYNNNNRTG 3 cut(s) 796, 1118, 1182
SmlI CTYRAG 3 cut(s) 689, 857, 1168
SmoI CTYRAG 3 cut(s) 689, 857, 1168
SphI GCATGC 1 cut(s) 795
Sse9I AATT 7 cut(s) 356, 495, 707, 744, 813, 913, 987
SseBI AGGCCT 2 cut(s) 167, 1231
SsiI CCGC 2 cut(s) 208, 1056
SspDI GGCGCC 1 cut(s) 179
SspI AATATT 2 cut(s) 32, 721
SspMI CTAG 3 cut(s) 303, 482, 1233
StuI AGGCCT 2 cut(s) 167, 1231
StyD4I CCNGG 2 cut(s) 102, 150
StyI CCWWGG 4 cut(s) 402, 423, 972, 1232
TaaI ACNGT 3 cut(s) 79, 959, 1133
TaqI TCGA 6 cut(s) 114, 285, 653, 690, 852, 1040
TasI AATT 7 cut(s) 356, 495, 707, 744, 813, 913, 987
TfiI GAWTC 2 cut(s) 572, 827
Tru1I TTAA 6 cut(s) 341, 549, 734, 816, 1145, 1169
Tru9I TTAA 6 cut(s) 341, 549, 734, 816, 1145, 1169
TscAI CASTG 5 cut(s) 125, 354, 435, 756, 1104
TseFI GTSAC 2 cut(s) 154, 524
TseI GCWGC 1 cut(s) 946
Tsp45I GTSAC 2 cut(s) 154, 524
TspDTI ATGAA 5 cut(s) 25, 77, 399, 546, 1016
TspRI CASTG 5 cut(s) 125, 354, 435, 756, 1104
Vha464I CTTAAG 1 cut(s) 1168
XapI RAATTY 4 cut(s) 495, 707, 744, 987
XbaI TCTAGA 1 cut(s) 481
XceI RCATGY 1 cut(s) 795
XhoI CTCGAG 1 cut(s) 689
XmaJI CCTAGG 1 cut(s) 1232
XspI CTAG 3 cut(s) 303, 482, 1233
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.