RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G11840 |
| fragaria_vesca | FvH4_3g26390 FvH4_6g20390 |
| malus_domestica | MD11G1173500.v1.1 MD12G1040800.v1.1 MD14G1039900.v1.1 |
| prunus_persica | Prupe.6G145200_v2.0.a1 Prupe.6G145200_v2.0.a1 Prupe.7G094100_v2.0.a1 |
| pyrus_communis | pycom11g14800 pycom12g03490 pycom14g03410 |
| rosa_chinensis | RchiOBHm_Chr3g0476021 RchiOBHm_Chr5g0048571 |
| rosa_laevigata | RLG00000023791 RLG00000034535 |
| rosa_multiflora | Rmu_sc0000585.1_g000008 Rmu_sc0007341.1_g000034 |
| rosa_roxburghii | Rroxscaffold_1G00033260 Rroxscaffold_6G00405500 |
| rosa_rugosa | Rorug03G0152800 Rorug05G0239500 |
| rosa_samantha | Rh3AG203700 Rh3BG233600 Rh3CG229000 Rh3DG229100 Rh5AG319200 Rh5BG329600 Rh5CG355500 Rh5DG340800 |
| rosa_wichuraiana | Rw0G021240 Rw3G018510 Rw5G029850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 404 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 533 |
| Acc36I | ACCTGC | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 1 cut(s) | 179 |
| AccII | CGCG | 1 cut(s) | 1046 |
| AciI | CCGC | 2 cut(s) | 208, 1056 |
| AclWI | GGATC | 4 cut(s) | 256, 324, 1010, 1172 |
| AcoI | YGGCCR | 3 cut(s) | 405, 909, 969 |
| AcsI | RAATTY | 4 cut(s) | 495, 707, 744, 987 |
| AcyI | GRCGYC | 2 cut(s) | 180, 191 |
| AfaI | GTAC | 1 cut(s) | 24 |
| AfeI | AGCGCT | 1 cut(s) | 366 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 76, 210 |
| AflII | CTTAAG | 1 cut(s) | 1168 |
| AgsI | TTSAA | 6 cut(s) | 14, 700, 707, 715, 827, 901 |
| AluBI | AGCT | 8 cut(s) | 488, 688, 758, 856, 862, 892, 946, 1108 |
| AluI | AGCT | 8 cut(s) | 488, 688, 758, 856, 862, 892, 946, 1108 |
| Alw21I | GWGCWC | 1 cut(s) | 120 |
| AlwI | GGATC | 4 cut(s) | 256, 324, 1010, 1172 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 949 |
| Ama87I | CYCGRG | 1 cut(s) | 689 |
| Aor51HI | AGCGCT | 1 cut(s) | 366 |
| AoxI | GGCC | 5 cut(s) | 165, 405, 909, 969, 1229 |
| ApeKI | GCWGC | 1 cut(s) | 946 |
| ApoI | RAATTY | 4 cut(s) | 495, 707, 744, 987 |
| AspA2I | CCTAGG | 1 cut(s) | 1232 |
| AspLEI | GCGC | 2 cut(s) | 182, 367 |
| AsuC2I | CCSGG | 2 cut(s) | 104, 152 |
| AsuHPI | GGTGA | 3 cut(s) | 476, 536, 993 |
| AvaI | CYCGRG | 1 cut(s) | 689 |
| AvrII | CCTAGG | 1 cut(s) | 1232 |
| BaeGI | GKGCMC | 1 cut(s) | 152 |
| BalI | TGGCCA | 2 cut(s) | 911, 971 |
| BanI | GGYRCC | 1 cut(s) | 179 |
| BbsI | GAAGAC | 1 cut(s) | 832 |
| Bbv12I | GWGCWC | 1 cut(s) | 120 |
| BbvI | GCAGC | 1 cut(s) | 933 |
| BccI | CCATC | 3 cut(s) | 53, 604, 926 |
| BclI | TGATCA | 1 cut(s) | 604 |
| BcnI | CCSGG | 2 cut(s) | 104, 152 |
| BfaI | CTAG | 3 cut(s) | 303, 482, 1233 |
| BfoI | RGCGCY | 2 cut(s) | 183, 368 |
| BfrI | CTTAAG | 1 cut(s) | 1168 |
| BfuAI | ACCTGC | 1 cut(s) | 404 |
| BglII | AGATCT | 1 cut(s) | 291 |
| BisI | GCNGC | 1 cut(s) | 947 |
| BlnI | CCTAGG | 1 cut(s) | 1232 |
| BlsI | GCNGC | 1 cut(s) | 948 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 152 |
| BmeT110I | CYCGRG | 1 cut(s) | 689 |
| BmiI | GGNNCC | 1 cut(s) | 181 |
| BmrFI | CCNGG | 2 cut(s) | 104, 152 |
| BmsI | GCATC | 4 cut(s) | 99, 120, 511, 1071 |
| BpiI | GAAGAC | 1 cut(s) | 832 |
| BpmI | CTGGAG | 1 cut(s) | 38 |
| BpuEI | CTTGAG | 1 cut(s) | 878 |
| BpuMI | CCSGG | 2 cut(s) | 104, 152 |
| BsaBI | GATNNNNATC | 1 cut(s) | 618 |
| BsaHI | GRCGYC | 2 cut(s) | 180, 191 |
| BsaJI | CCNNGG | 5 cut(s) | 402, 423, 797, 972, 1232 |
| BsaWI | WCCGGW | 1 cut(s) | 830 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 76, 210 |
| Bse118I | RCCGGY | 2 cut(s) | 182, 1003 |
| Bse1I | ACTGG | 2 cut(s) | 125, 651 |
| Bse3DI | GCAATG | 1 cut(s) | 230 |
| Bse8I | GATNNNNATC | 1 cut(s) | 618 |
| BseDI | CCNNGG | 5 cut(s) | 402, 423, 797, 972, 1232 |
| BseJI | GATNNNNATC | 1 cut(s) | 618 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 76, 210 |
| BseMI | GCAATG | 1 cut(s) | 230 |
| BseNI | ACTGG | 2 cut(s) | 125, 651 |
| BseSI | GKGCMC | 1 cut(s) | 152 |
| BseXI | GCAGC | 1 cut(s) | 933 |
| BsgI | GTGCAG | 3 cut(s) | 330, 753, 855 |
| Bsh1236I | CGCG | 1 cut(s) | 1046 |
| Bsh1285I | CGRYCG | 2 cut(s) | 103, 1044 |
| BshFI | GGCC | 5 cut(s) | 167, 407, 911, 971, 1231 |
| BshNI | GGYRCC | 1 cut(s) | 179 |
| BsiEI | CGRYCG | 2 cut(s) | 103, 1044 |
| BsiHKAI | GWGCWC | 1 cut(s) | 120 |
| BsiHKCI | CYCGRG | 1 cut(s) | 689 |
| BsiSI | CCGG | 5 cut(s) | 103, 152, 183, 831, 1004 |
| BslFI | GGGAC | 1 cut(s) | 27 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 76, 210 |
| BsmFI | GGGAC | 1 cut(s) | 27 |
| BsnI | GGCC | 5 cut(s) | 167, 407, 911, 971, 1231 |
| BsoBI | CYCGRG | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 152 |
| Bsp19I | CCATGG | 2 cut(s) | 402, 972 |
| Bsp68I | TCGCGA | 1 cut(s) | 1046 |
| BspACI | CCGC | 2 cut(s) | 208, 1056 |
| BspANI | GGCC | 5 cut(s) | 167, 407, 911, 971, 1231 |
| BspFNI | CGCG | 1 cut(s) | 1046 |
| BspHI | TCATGA | 1 cut(s) | 60 |
| BspLI | GGNNCC | 1 cut(s) | 181 |
| BspMI | ACCTGC | 1 cut(s) | 404 |
| BspPI | GGATC | 4 cut(s) | 256, 324, 1010, 1172 |
| BspT107I | GGYRCC | 1 cut(s) | 179 |
| BspTI | CTTAAG | 1 cut(s) | 1168 |
| BsrDI | GCAATG | 1 cut(s) | 230 |
| BsrFI | RCCGGY | 2 cut(s) | 182, 1003 |
| BsrI | ACTGG | 2 cut(s) | 125, 651 |
| BssAI | RCCGGY | 2 cut(s) | 182, 1003 |
| BssECI | CCNNGG | 5 cut(s) | 402, 423, 797, 972, 1232 |
| BssNI | GRCGYC | 2 cut(s) | 180, 191 |
| BssT1I | CCWWGG | 4 cut(s) | 402, 423, 972, 1232 |
| Bst4CI | ACNGT | 3 cut(s) | 79, 959, 1133 |
| BstACI | GRCGYC | 2 cut(s) | 180, 191 |
| BstAFI | CTTAAG | 1 cut(s) | 1168 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 169, 419 |
| BstC8I | GCNNGC | 5 cut(s) | 165, 184, 212, 793, 864 |
| BstDEI | CTNAG | 2 cut(s) | 674, 992 |
| BstDSI | CCRYGG | 3 cut(s) | 402, 797, 972 |
| BstFNI | CGCG | 1 cut(s) | 1046 |
| BstH2I | RGCGCY | 2 cut(s) | 183, 368 |
| BstHHI | GCGC | 2 cut(s) | 182, 367 |
| BstMCI | CGRYCG | 2 cut(s) | 103, 1044 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 169, 220, 419 |
| BstNSI | RCATGY | 1 cut(s) | 795 |
| BstSCI | CCNGG | 2 cut(s) | 102, 150 |
| BstSLI | GKGCMC | 1 cut(s) | 152 |
| BstUI | CGCG | 1 cut(s) | 1046 |
| BstV1I | GCAGC | 1 cut(s) | 933 |
| BstV2I | GAAGAC | 1 cut(s) | 832 |
| BstX2I | RGATCY | 3 cut(s) | 291, 316, 1164 |
| BstYI | RGATCY | 3 cut(s) | 291, 316, 1164 |
| BsuRI | GGCC | 5 cut(s) | 167, 407, 911, 971, 1231 |
| BtgI | CCRYGG | 3 cut(s) | 402, 797, 972 |
| BtgZI | GCGATG | 1 cut(s) | 1061 |
| BtsI | GCAGTG | 2 cut(s) | 435, 1104 |
| BtsIMutI | CAGTG | 5 cut(s) | 118, 347, 435, 749, 1104 |
| BtuMI | TCGCGA | 1 cut(s) | 1046 |
| BveI | ACCTGC | 1 cut(s) | 404 |
| Cac8I | GCNNGC | 5 cut(s) | 165, 184, 212, 793, 864 |
| CaiI | CAGNNNCTG | 1 cut(s) | 949 |
| CciI | TCATGA | 1 cut(s) | 60 |
| CfoI | GCGC | 2 cut(s) | 182, 367 |
| Cfr10I | RCCGGY | 2 cut(s) | 182, 1003 |
| CseI | GACGC | 1 cut(s) | 199 |
| Csp6I | GTAC | 1 cut(s) | 23 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 901, 936 |
| CviAII | CATG | 9 cut(s) | 61, 403, 506, 582, 681, 727, 792, 973, 1114 |
| CviQI | GTAC | 1 cut(s) | 23 |
| DdeI | CTNAG | 2 cut(s) | 674, 992 |
| DinI | GGCGCC | 1 cut(s) | 181 |
| DraI | TTTAAA | 1 cut(s) | 1146 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 533 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 533 |
| EaeI | YGGCCR | 3 cut(s) | 405, 909, 969 |
| Eco130I | CCWWGG | 4 cut(s) | 402, 423, 972, 1232 |
| Eco147I | AGGCCT | 2 cut(s) | 167, 1231 |
| Eco47III | AGCGCT | 1 cut(s) | 366 |
| Eco88I | CYCGRG | 1 cut(s) | 689 |
| EcoRI | GAATTC | 2 cut(s) | 707, 987 |
| EcoT14I | CCWWGG | 4 cut(s) | 402, 423, 972, 1232 |
| EcoT22I | ATGCAT | 1 cut(s) | 793 |
| EgeI | GGCGCC | 1 cut(s) | 181 |
| EheI | GGCGCC | 1 cut(s) | 181 |
| ErhI | CCWWGG | 4 cut(s) | 402, 423, 972, 1232 |
| FaeI | CATG | 9 cut(s) | 64, 406, 509, 585, 684, 730, 795, 976, 1117 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 152, 184, 525, 557 |
| FaqI | GGGAC | 1 cut(s) | 27 |
| FatI | CATG | 9 cut(s) | 60, 402, 505, 581, 680, 726, 791, 972, 1113 |
| FauNDI | CATATG | 1 cut(s) | 38 |
| FbaI | TGATCA | 1 cut(s) | 604 |
| Fnu4HI | GCNGC | 1 cut(s) | 947 |
| Fsp4HI | GCNGC | 1 cut(s) | 947 |
| FspBI | CTAG | 3 cut(s) | 303, 482, 1233 |
| GlaI | GCGC | 2 cut(s) | 181, 366 |
| GluI | GCNGC | 1 cut(s) | 947 |
| GsuI | CTGGAG | 1 cut(s) | 38 |
| HaeII | RGCGCY | 2 cut(s) | 183, 368 |
| HaeIII | GGCC | 5 cut(s) | 167, 407, 911, 971, 1231 |
| HapII | CCGG | 5 cut(s) | 103, 152, 183, 831, 1004 |
| HgaI | GACGC | 1 cut(s) | 199 |
| HhaI | GCGC | 2 cut(s) | 182, 367 |
| Hin1I | GRCGYC | 2 cut(s) | 180, 191 |
| Hin1II | CATG | 9 cut(s) | 64, 406, 509, 585, 684, 730, 795, 976, 1117 |
| Hin6I | GCGC | 2 cut(s) | 180, 365 |
| HinP1I | GCGC | 2 cut(s) | 180, 365 |
| HincII | GTYRAC | 1 cut(s) | 342 |
| HindII | GTYRAC | 1 cut(s) | 342 |
| HindIII | AAGCTT | 1 cut(s) | 486 |
| HinfI | GANTC | 3 cut(s) | 276, 572, 827 |
| HpaI | GTTAAC | 1 cut(s) | 342 |
| HpaII | CCGG | 5 cut(s) | 103, 152, 183, 831, 1004 |
| HphI | GGTGA | 3 cut(s) | 476, 536, 993 |
| Hpy166II | GTNNAC | 1 cut(s) | 342 |
| Hpy188I | TCNGA | 4 cut(s) | 609, 1078, 1129, 1221 |
| Hpy8I | GTNNAC | 1 cut(s) | 342 |
| HpyCH4III | ACNGT | 3 cut(s) | 79, 959, 1133 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 169, 220, 419 |
| HpyF3I | CTNAG | 2 cut(s) | 674, 992 |
| Hsp92I | GRCGYC | 2 cut(s) | 180, 191 |
| Hsp92II | CATG | 9 cut(s) | 64, 406, 509, 585, 684, 730, 795, 976, 1117 |
| HspAI | GCGC | 2 cut(s) | 180, 365 |
| KasI | GGCGCC | 1 cut(s) | 179 |
| KroI | GCCGGC | 1 cut(s) | 182 |
| KroNI | GCCGGC | 1 cut(s) | 184 |
| Ksp22I | TGATCA | 1 cut(s) | 604 |
| KspAI | GTTAAC | 1 cut(s) | 342 |
| LmnI | GCTCC | 1 cut(s) | 1094 |
| Lsp1109I | GCAGC | 1 cut(s) | 933 |
| LweI | GCATC | 4 cut(s) | 99, 120, 511, 1071 |
| MaeI | CTAG | 3 cut(s) | 303, 482, 1233 |
| MaeIII | GTNAC | 5 cut(s) | 73, 82, 154, 524, 883 |
| MboII | GAAGA | 2 cut(s) | 703, 832 |
| MflI | RGATCY | 3 cut(s) | 291, 316, 1164 |
| MhlI | GDGCHC | 2 cut(s) | 120, 152 |
| MlsI | TGGCCA | 2 cut(s) | 911, 971 |
| MluCI | AATT | 7 cut(s) | 356, 495, 707, 744, 813, 913, 987 |
| MluNI | TGGCCA | 2 cut(s) | 911, 971 |
| Mly113I | GGCGCC | 1 cut(s) | 180 |
| MlyI | GAGTC | 1 cut(s) | 270 |
| MmeI | TCCRAC | 2 cut(s) | 562, 1072 |
| Mox20I | TGGCCA | 2 cut(s) | 911, 971 |
| Mph1103I | ATGCAT | 1 cut(s) | 793 |
| MroNI | GCCGGC | 1 cut(s) | 182 |
| MscI | TGGCCA | 2 cut(s) | 911, 971 |
| MseI | TTAA | 6 cut(s) | 341, 549, 734, 816, 1145, 1169 |
| MslI | CAYNNNNRTG | 3 cut(s) | 796, 1118, 1182 |
| Msp20I | TGGCCA | 2 cut(s) | 911, 971 |
| MspA1I | CMGCKG | 1 cut(s) | 946 |
| MspCI | CTTAAG | 1 cut(s) | 1168 |
| MspI | CCGG | 5 cut(s) | 103, 152, 183, 831, 1004 |
| MspR9I | CCNGG | 2 cut(s) | 104, 152 |
| MvnI | CGCG | 1 cut(s) | 1046 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 169, 220, 419 |
| NaeI | GCCGGC | 1 cut(s) | 184 |
| NarI | GGCGCC | 1 cut(s) | 180 |
| NciI | CCSGG | 2 cut(s) | 104, 152 |
| NcoI | CCATGG | 2 cut(s) | 402, 972 |
| NdeI | CATATG | 1 cut(s) | 38 |
| NgoMIV | GCCGGC | 1 cut(s) | 182 |
| NlaIII | CATG | 9 cut(s) | 64, 406, 509, 585, 684, 730, 795, 976, 1117 |
| NlaIV | GGNNCC | 1 cut(s) | 181 |
| NmuCI | GTSAC | 2 cut(s) | 154, 524 |
| NruI | TCGCGA | 1 cut(s) | 1046 |
| NsiI | ATGCAT | 1 cut(s) | 793 |
| NspI | RCATGY | 1 cut(s) | 795 |
| PaeI | GCATGC | 1 cut(s) | 795 |
| PaeR7I | CTCGAG | 1 cut(s) | 689 |
| PagI | TCATGA | 1 cut(s) | 60 |
| PaqCI | CACCTGC | 1 cut(s) | 404 |
| PceI | AGGCCT | 2 cut(s) | 167, 1231 |
| PdiI | GCCGGC | 1 cut(s) | 184 |
| PfeI | GAWTC | 2 cut(s) | 572, 827 |
| PkrI | GCNGC | 1 cut(s) | 948 |
| Ple19I | CGATCG | 1 cut(s) | 1044 |
| PleI | GAGTC | 1 cut(s) | 270 |
| PluTI | GGCGCC | 1 cut(s) | 183 |
| PpsI | GAGTC | 1 cut(s) | 270 |
| PspN4I | GGNNCC | 1 cut(s) | 181 |
| PstNI | CAGNNNCTG | 1 cut(s) | 949 |
| PsuI | RGATCY | 3 cut(s) | 291, 316, 1164 |
| PvuI | CGATCG | 1 cut(s) | 1044 |
| PvuII | CAGCTG | 1 cut(s) | 946 |
| RruI | TCGCGA | 1 cut(s) | 1046 |
| RsaI | GTAC | 1 cut(s) | 24 |
| RsaNI | GTAC | 1 cut(s) | 23 |
| RseI | CAYNNNNRTG | 3 cut(s) | 796, 1118, 1182 |
| SaqAI | TTAA | 6 cut(s) | 341, 549, 734, 816, 1145, 1169 |
| SatI | GCNGC | 1 cut(s) | 947 |
| SchI | GAGTC | 1 cut(s) | 270 |
| ScrFI | CCNGG | 2 cut(s) | 104, 152 |
| SduI | GDGCHC | 2 cut(s) | 120, 152 |
| SfaNI | GCATC | 4 cut(s) | 99, 120, 511, 1071 |
| SfoI | GGCGCC | 1 cut(s) | 181 |
| Sfr274I | CTCGAG | 1 cut(s) | 689 |
| SlaI | CTCGAG | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 796, 1118, 1182 |
| SmlI | CTYRAG | 3 cut(s) | 689, 857, 1168 |
| SmoI | CTYRAG | 3 cut(s) | 689, 857, 1168 |
| SphI | GCATGC | 1 cut(s) | 795 |
| Sse9I | AATT | 7 cut(s) | 356, 495, 707, 744, 813, 913, 987 |
| SseBI | AGGCCT | 2 cut(s) | 167, 1231 |
| SsiI | CCGC | 2 cut(s) | 208, 1056 |
| SspDI | GGCGCC | 1 cut(s) | 179 |
| SspI | AATATT | 2 cut(s) | 32, 721 |
| SspMI | CTAG | 3 cut(s) | 303, 482, 1233 |
| StuI | AGGCCT | 2 cut(s) | 167, 1231 |
| StyD4I | CCNGG | 2 cut(s) | 102, 150 |
| StyI | CCWWGG | 4 cut(s) | 402, 423, 972, 1232 |
| TaaI | ACNGT | 3 cut(s) | 79, 959, 1133 |
| TaqI | TCGA | 6 cut(s) | 114, 285, 653, 690, 852, 1040 |
| TasI | AATT | 7 cut(s) | 356, 495, 707, 744, 813, 913, 987 |
| TfiI | GAWTC | 2 cut(s) | 572, 827 |
| Tru1I | TTAA | 6 cut(s) | 341, 549, 734, 816, 1145, 1169 |
| Tru9I | TTAA | 6 cut(s) | 341, 549, 734, 816, 1145, 1169 |
| TscAI | CASTG | 5 cut(s) | 125, 354, 435, 756, 1104 |
| TseFI | GTSAC | 2 cut(s) | 154, 524 |
| TseI | GCWGC | 1 cut(s) | 946 |
| Tsp45I | GTSAC | 2 cut(s) | 154, 524 |
| TspDTI | ATGAA | 5 cut(s) | 25, 77, 399, 546, 1016 |
| TspRI | CASTG | 5 cut(s) | 125, 354, 435, 756, 1104 |
| Vha464I | CTTAAG | 1 cut(s) | 1168 |
| XapI | RAATTY | 4 cut(s) | 495, 707, 744, 987 |
| XbaI | TCTAGA | 1 cut(s) | 481 |
| XceI | RCATGY | 1 cut(s) | 795 |
| XhoI | CTCGAG | 1 cut(s) | 689 |
| XmaJI | CCTAGG | 1 cut(s) | 1232 |
| XspI | CTAG | 3 cut(s) | 303, 482, 1233 |
| Zsp2I | ATGCAT | 1 cut(s) | 793 |