Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004027

Physical Location & Seq

Genomic Coordinates Forward (+)

11901457 .. 11904858

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G145200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAGGAAATTCAGATACCTGAGTATTTCATATGTCCCATATCTCTTCAGATCATGAAAGACCCAGTAACGGTGTTGACCGGCATCACCTACGACCGCGAAAGCATCGAGCAGTGGTTTTCAACAACACACGACATGTCGTGTCCGGTCACAAAGCAGGCCTTGCCAAGAGACAACGCCTTGACGCCTAATCACACGCTCCGCAGGCTGATCCAGCAATGGTGCAAAGAAAATGCAACCAATGGTGTAGGTTTGATCCCAACTCCGAAACTTACCCTGAACAAGATCTATGTCTCTGGACTTGTCCAGGATCTTGGGGTTTCTCATTTGCAGGCCAACGCATTGAAAAAATTGGAAGCCCTTGCATTAGAGAATGCTCAAAGGAACAGGAGGTCCATGGGTGAAGCAGGTGTTGCCAAAGCTATGGTTTTGTTCATTGTAAGATGTTACAAGGAAGGTGCTCAAAGAAATGGTGTTCTAGAAGCTTTGAGAATTTTGCACCATGTTTGGAGTGTGGATGATGATCATGAAGTTAAGCTTATTGTCAATGGAAGCAATGACTTTCTTGAATCTTTGACATGGGTTTTAGGGTGTGATCCTGAGATGGATAACCATGCGATCCTCATGAAAAGCGAAGCGATACTAGTAATGAAAATGGCAATGGAAGTCATAACTGCAAGTCAGCTCGAGCGGTTGAATCTTGAATTTTTCAAGAATATTGTAATGGTATCTAAAGAGAAGATCTCCCAAGAAGCTCTCAAATCTGCACTGCTTGTTCTAATAGAAGCATGCCTGTTGGGGAGAAATCGAATGAAGATGGTTGAATCCGGTGCAATGTTCCAGCTCATCGAGCTCGAACTAGCAAGACCCGAAAGGCACATCACCGAGCTGATCTTCAATCTCTTGGCCAATTTGTGTGGCTGCGCTGATGGGAGAGCACAGCTTCTAAAGCACGCTGGTGGTATTGCTTTAGTGTCTAAAAGAATTCTTAGGGTTTCACCAGCAACAGATGATCGAGCGGTCCATATACTTTCATTGATCGCGATGTTCTCAGCGACACATGAAGTTCTTCAGGAGATGCTGTTAGTTGGAGCAGTGTCAAAGCTTTGCATGGTAATGCAAGGAGACTGTACAGCCCATTTGAAGAAGAAGGTTAGAGGGATCTTAAGGCTGCATTCTAATGTATGGAACAATTCACCTTGTATTGCTGTATATCTTGTAACAAGGCCAAGGCCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

U-box

Protein Analysis

414

Amino Acids

46.2

Weight (kDa)

8.24

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11840
fragaria_vesca	FvH4_3g26390 FvH4_6g20390
malus_domestica	MD11G1173500.v1.1 MD12G1040800.v1.1 MD14G1039900.v1.1
prunus_persica	Prupe.6G145200_v2.0.a1 Prupe.6G145200_v2.0.a1 Prupe.7G094100_v2.0.a1
pyrus_communis	pycom11g14800 pycom12g03490 pycom14g03410
rosa_chinensis	RchiOBHm_Chr3g0476021 RchiOBHm_Chr5g0048571
rosa_laevigata	RLG00000023791 RLG00000034535
rosa_multiflora	Rmu_sc0000585.1_g000008 Rmu_sc0007341.1_g000034
rosa_roxburghii	Rroxscaffold_1G00033260 Rroxscaffold_6G00405500
rosa_rugosa	Rorug03G0152800 Rorug05G0239500
rosa_samantha	Rh3AG203700 Rh3BG233600 Rh3CG229000 Rh3DG229100 Rh5AG319200 Rh5BG329600 Rh5CG355500 Rh5DG340800
rosa_wichuraiana	Rw0G021240 Rw3G018510 Rw5G029850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	398
AccBSI	CCGCTC	2 cut(s)	691, 1019
AccII	CGCG	2 cut(s)	99, 1043
AciI	CCGC	4 cut(s)	97, 202, 691, 1019
AclWI	GGATC	6 cut(s)	205, 250, 318, 590, 613, 1169
AcoI	YGGCCR	1 cut(s)	906
AcsI	RAATTY	4 cut(s)	9, 492, 704, 984
AcuI	CTGAAG	2 cut(s)	32, 1055
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	1165
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	9 cut(s)	123, 346, 569, 697, 704, 712, 824, 898, 1144
AhlI	ACTAGT	1 cut(s)	643
AjnI	CCWGG	1 cut(s)	306
AleI	CACNNNNGTG	1 cut(s)	957
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
Alw21I	GWGCWC	3 cut(s)	463, 855, 940
Alw26I	GTCTC	3 cut(s)	165, 298, 1119
AlwI	GGATC	6 cut(s)	205, 250, 318, 590, 613, 1169
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	5 cut(s)	159, 333, 906, 1226, 1232
ApeKI	GCWGC	2 cut(s)	921, 1171
ApoI	RAATTY	4 cut(s)	9, 492, 704, 984
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	926
AspS9I	GGNCC	2 cut(s)	393, 1021
AsuHPI	GGTGA	5 cut(s)	79, 413, 874, 990, 1188
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	393, 1021
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BalI	TGGCCA	1 cut(s)	908
BanII	GRGCYC	1 cut(s)	855
Bbv12I	GWGCWC	3 cut(s)	463, 855, 940
BbvI	GCAGC	2 cut(s)	908, 1158
BccI	CCATC	3 cut(s)	598, 811, 923
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	165, 298, 1119
BcuI	ACTAGT	1 cut(s)	643
BfaI	CTAG	3 cut(s)	479, 644, 860
BfrI	CTTAAG	1 cut(s)	1165
BfuAI	ACCTGC	1 cut(s)	398
BglII	AGATCT	2 cut(s)	285, 741
BisI	GCNGC	2 cut(s)	922, 1172
BlsI	GCNGC	2 cut(s)	923, 1173
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	393, 1021
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	393, 1021
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	93, 114, 1068
BmuI	ACTGGG	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BsaBI	GATNNNNATC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	396, 1229
BsaWI	WCCGGW	2 cut(s)	145, 827
BsaXI	ACNNNNNCTCC	2 cut(s)	1067, 1097
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	4 cut(s)	224, 562, 666, 840
Bse8I	GATNNNNATC	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	2 cut(s)	396, 1229
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	4 cut(s)	224, 562, 666, 840
BseMII	CTCAG	3 cut(s)	12, 591, 1065
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	908, 1158
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	2 cut(s)	99, 1043
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	161, 335, 908, 1228, 1234
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	463, 855, 940
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	3 cut(s)	81, 146, 828
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	3 cut(s)	165, 298, 1119
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	2 cut(s)	379, 1174
BsnI	GGCC	5 cut(s)	161, 335, 908, 1228, 1234
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	463, 855, 940
Bsp1407I	TGTACA	1 cut(s)	1130
Bsp19I	CCATGG	1 cut(s)	396
Bsp68I	TCGCGA	1 cut(s)	1043
BspACI	CCGC	4 cut(s)	97, 202, 691, 1019
BspANI	GGCC	5 cut(s)	161, 335, 908, 1228, 1234
BspCNI	CTCAG	3 cut(s)	13, 592, 1064
BspFNI	CGCG	2 cut(s)	99, 1043
BspHI	TCATGA	3 cut(s)	54, 526, 624
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	6 cut(s)	205, 250, 318, 590, 613, 1169
BspTI	CTTAAG	1 cut(s)	1165
BsrBI	CCGCTC	2 cut(s)	691, 1019
BsrDI	GCAATG	4 cut(s)	224, 562, 666, 840
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	1130
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	396, 1229
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	2 cut(s)	396, 1229
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	73, 1130
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	1165
BstAPI	GCANNNNNTGC	2 cut(s)	163, 413
BstAUI	TGTACA	1 cut(s)	1130
BstC8I	GCNNGC	5 cut(s)	159, 206, 333, 790, 954
BstDEI	CTNAG	4 cut(s)	21, 600, 989, 1051
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	2 cut(s)	99, 1043
BstHHI	GCGC	1 cut(s)	926
BstMAI	GTCTC	3 cut(s)	165, 298, 1119
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	6 cut(s)	163, 205, 214, 413, 850, 949
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	139, 792
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	2 cut(s)	99, 1043
BstV1I	GCAGC	2 cut(s)	908, 1158
BstX2I	RGATCY	4 cut(s)	285, 310, 741, 1161
BstXI	CCANNNNNNTGG	2 cut(s)	314, 424
BstYI	RGATCY	4 cut(s)	285, 310, 741, 1161
BsuRI	GGCC	5 cut(s)	161, 335, 908, 1228, 1234
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	1058
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	3 cut(s)	119, 767, 1101
BtsIMutI	CAGTG	3 cut(s)	119, 767, 1101
BtuMI	TCGCGA	1 cut(s)	1043
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	5 cut(s)	159, 206, 333, 790, 954
CciI	TCATGA	3 cut(s)	54, 526, 624
CfoI	GCGC	1 cut(s)	926
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	393, 1021
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	1131
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	4 cut(s)	21, 600, 989, 1051
EaeI	YGGCCR	1 cut(s)	906
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	2 cut(s)	396, 1229
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	855
Eco47I	GGWCC	2 cut(s)	393, 1021
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	32, 1055
Eco88I	CYCGRG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	984
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	2 cut(s)	396, 1229
EcoT38I	GRGCYC	1 cut(s)	855
ErhI	CCWWGG	2 cut(s)	396, 1229
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 522, 554
FaqI	GGGAC	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	922, 1172
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	855
Fsp4HI	GCNGC	2 cut(s)	922, 1172
FspBI	CTAG	3 cut(s)	479, 644, 860
GlaI	GCGC	1 cut(s)	925
GluI	GCNGC	2 cut(s)	922, 1172
HaeIII	GGCC	5 cut(s)	161, 335, 908, 1228, 1234
HapII	CCGG	3 cut(s)	81, 146, 828
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	926
Hin1I	GRCGYC	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	924
HinP1I	GCGC	1 cut(s)	924
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HindIII	AAGCTT	3 cut(s)	483, 536, 1103
HinfI	GANTC	3 cut(s)	569, 697, 824
HpaII	CCGG	3 cut(s)	81, 146, 828
HphI	GGTGA	5 cut(s)	79, 413, 874, 990, 1188
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	15, 51, 267
Hpy8I	GTNNAC	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	449, 1144
HpyCH4III	ACNGT	2 cut(s)	73, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	163, 205, 214, 413, 850, 949
HpyF3I	CTNAG	4 cut(s)	21, 600, 989, 1051
Hsp92I	GRCGYC	1 cut(s)	185
HspAI	GCGC	1 cut(s)	924
Ksp22I	TGATCA	1 cut(s)	523
LmnI	GCTCC	2 cut(s)	204, 1091
Lsp1109I	GCAGC	2 cut(s)	908, 1158
LweI	GCATC	3 cut(s)	93, 114, 1068
MaeI	CTAG	3 cut(s)	479, 644, 860
MaeIII	GTNAC	4 cut(s)	67, 148, 446, 1219
MbiI	CCGCTC	2 cut(s)	691, 1019
MboII	GAAGA	7 cut(s)	38, 751, 826, 886, 1061, 1156, 1159
MflI	RGATCY	4 cut(s)	285, 310, 741, 1161
MhlI	GDGCHC	3 cut(s)	463, 855, 940
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	7 cut(s)	9, 350, 492, 704, 910, 984, 1192
MluNI	TGGCCA	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	1069
MnlI	CCTC	3 cut(s)	384, 632, 1151
Mox20I	TGGCCA	1 cut(s)	908
MroXI	GAANNNNTTC	1 cut(s)	1068
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	2 cut(s)	534, 1166
MslI	CAYNNNNRTG	3 cut(s)	957, 1115, 1179
Msp20I	TGGCCA	1 cut(s)	908
MspCI	CTTAAG	1 cut(s)	1165
MspI	CCGG	3 cut(s)	81, 146, 828
MspR9I	CCNGG	1 cut(s)	308
Mva1269I	GAATGC	2 cut(s)	379, 1174
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	99, 1043
MwoI	GCNNNNNNNGC	6 cut(s)	163, 205, 214, 413, 850, 949
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	148
NruI	TCGCGA	1 cut(s)	1043
NspI	RCATGY	2 cut(s)	139, 792
OliI	CACNNNNGTG	1 cut(s)	957
PaeI	GCATGC	1 cut(s)	792
PaeR7I	CTCGAG	1 cut(s)	686
PagI	TCATGA	3 cut(s)	54, 526, 624
PaqCI	CACCTGC	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	161
PciI	ACATGT	1 cut(s)	135
PctI	GAATGC	2 cut(s)	379, 1174
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	3 cut(s)	569, 697, 824
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	923, 1173
PscI	ACATGT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	393, 1021
PspXI	VCTCGAGB	1 cut(s)	686
PsuI	RGATCY	4 cut(s)	285, 310, 741, 1161
RruI	TCGCGA	1 cut(s)	1043
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
RseI	CAYNNNNRTG	3 cut(s)	957, 1115, 1179
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	2 cut(s)	534, 1166
SatI	GCNGC	2 cut(s)	922, 1172
Sau96I	GGNCC	2 cut(s)	393, 1021
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	3 cut(s)	463, 855, 940
SfaNI	GCATC	3 cut(s)	93, 114, 1068
Sfr274I	CTCGAG	1 cut(s)	686
SinI	GGWCC	2 cut(s)	393, 1021
SlaI	CTCGAG	1 cut(s)	686
SmiMI	CAYNNNNRTG	3 cut(s)	957, 1115, 1179
SmlI	CTYRAG	2 cut(s)	686, 1165
SmoI	CTYRAG	2 cut(s)	686, 1165
SpeI	ACTAGT	1 cut(s)	643
SphI	GCATGC	1 cut(s)	792
Sse9I	AATT	7 cut(s)	9, 350, 492, 704, 910, 984, 1192
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	4 cut(s)	97, 202, 691, 1019
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	3 cut(s)	479, 644, 860
SstI	GAGCTC	1 cut(s)	855
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	396, 1229
TaaI	ACNGT	2 cut(s)	73, 1130
TaqI	TCGA	6 cut(s)	108, 687, 808, 849, 855, 1015
TasI	AATT	7 cut(s)	9, 350, 492, 704, 910, 984, 1192
TatI	WGTACW	1 cut(s)	1130
TfiI	GAWTC	3 cut(s)	569, 697, 824
Tru1I	TTAA	2 cut(s)	534, 1166
Tru9I	TTAA	2 cut(s)	534, 1166
TscAI	CASTG	3 cut(s)	119, 774, 1101
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	921, 1171
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	9 cut(s)	19, 71, 424, 543, 641, 665, 827, 1023, 1077
TspRI	CASTG	3 cut(s)	119, 774, 1101
Vha464I	CTTAAG	1 cut(s)	1165
VpaK11BI	GGWCC	2 cut(s)	393, 1021
XapI	RAATTY	4 cut(s)	9, 492, 704, 984
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	2 cut(s)	139, 792
XhoI	CTCGAG	1 cut(s)	686
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	3 cut(s)	479, 644, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.